Wall clock time and date at job start Mon Mar 30 2020 18:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46507 * 109.47327 * 2 1 4 4 C 1.46503 * 119.99880 * 287.01834 * 3 2 1 5 5 C 1.50692 * 109.46879 * 269.99571 * 4 3 2 6 6 H 1.08000 * 120.00327 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99921 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99724 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00159 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47269 * 60.00303 * 9 7 5 11 11 H 1.48505 * 109.47141 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46891 * 299.99761 * 9 7 5 13 13 C 1.34774 * 119.99696 * 107.01498 * 3 2 1 14 14 O 1.21544 * 119.99806 * 186.57055 * 13 3 2 15 15 C 1.47885 * 119.99979 * 6.57455 * 13 3 2 16 16 C 1.36296 * 119.75805 * 324.32223 * 15 13 3 17 17 C 1.40404 * 119.90560 * 180.02562 * 16 15 13 18 18 C 1.36111 * 119.41463 * 359.75965 * 17 16 15 19 19 C 1.41235 * 119.51095 * 0.46757 * 18 17 16 20 20 O 1.21963 * 119.95880 * 179.78253 * 19 18 17 21 21 N 1.34670 * 120.08649 * 359.50608 * 19 18 17 22 22 H 0.97004 * 119.70486 * 180.25347 * 21 19 18 23 23 H 1.09004 * 109.47345 * 59.99508 * 1 2 3 24 24 H 1.08999 * 109.47622 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47362 * 299.99948 * 1 2 3 26 26 H 1.09007 * 109.47141 * 240.00629 * 2 1 3 27 27 H 1.08997 * 109.47591 * 120.00221 * 2 1 3 28 28 H 1.09001 * 109.47117 * 29.99939 * 4 3 2 29 29 H 1.08997 * 109.46614 * 149.99366 * 4 3 2 30 30 H 0.97008 * 119.99713 * 179.97438 * 8 7 5 31 31 H 1.07997 * 120.04474 * 0.02562 * 16 15 13 32 32 H 1.07992 * 120.29199 * 180.02562 * 17 16 15 33 33 H 1.07999 * 120.24242 * 180.23117 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.9124 2.1956 -1.2132 5 6 3.1570 2.0220 -2.0449 6 1 3.9476 1.3700 -1.7042 7 6 3.2864 2.6957 -3.2410 8 7 2.3234 3.4893 -3.6562 9 14 4.8288 2.4799 -4.2723 10 1 4.9775 1.0509 -4.6477 11 1 4.7221 3.3065 -5.5015 12 1 6.0133 2.9115 -3.4876 13 6 2.5650 1.9027 1.1161 14 8 2.8605 3.0810 1.1547 15 6 2.8052 1.0411 2.2938 16 6 1.9252 0.0445 2.5937 17 6 2.1500 -0.7750 3.7114 18 6 3.2519 -0.5662 4.4826 19 6 4.1451 0.4767 4.1519 20 8 5.1329 0.6736 4.8396 21 7 3.9104 1.2505 3.0751 22 1 4.5294 1.9629 2.8509 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 1.0432 1.8781 -1.7892 29 1 1.8026 3.2446 -0.9381 30 1 2.4146 3.9636 -4.4975 31 1 1.0562 -0.1146 1.9725 32 1 1.4570 -1.5668 3.9546 33 1 3.4399 -1.1910 5.3432 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229979311.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:46 Heat of formation + Delta-G solvation = -19.096836 kcal Electronic energy + Delta-G solvation = -18254.824064 eV Core-core repulsion = 15282.026948 eV Total energy + Delta-G solvation = -2972.797116 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.36729 -39.22303 -36.71038 -35.93512 -33.53506 -32.98526 -30.69270 -30.09196 -27.35851 -24.89476 -23.56942 -23.20364 -22.50374 -19.79596 -18.10389 -17.31897 -17.11835 -16.58029 -15.78218 -15.47842 -15.27816 -15.08069 -14.44898 -14.35648 -13.67099 -13.38163 -12.65187 -12.53753 -12.25931 -11.99626 -11.86361 -11.69032 -11.33733 -11.03388 -10.85218 -10.68620 -10.38374 -10.30620 -10.19686 -9.82457 -9.40530 -8.55805 -8.09038 -7.94896 -6.17832 -4.23973 0.51858 1.63540 2.62704 3.17148 3.24562 3.29663 3.32247 3.58345 3.67636 4.32132 4.45093 4.60435 4.85100 5.02330 5.14813 5.18251 5.25886 5.42728 5.61341 5.77185 5.86902 6.05133 6.08371 6.12616 6.39520 6.54556 6.74296 6.93902 7.18644 7.28612 7.76529 7.97783 8.03078 8.05140 8.50281 8.80332 9.41741 10.90203 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.026089 B = 0.006292 C = 0.005571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.980219 B = 4448.933684 C = 5024.449480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.062 3.938 3 N -0.570 5.570 4 C 0.245 3.755 5 C -0.536 4.536 6 H 0.058 0.942 7 C 0.065 3.935 8 N -0.891 5.891 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 C 0.537 3.463 14 O -0.524 6.524 15 C 0.144 3.856 16 C -0.221 4.221 17 C -0.019 4.019 18 C -0.233 4.233 19 C 0.518 3.482 20 O -0.556 6.556 21 N -0.585 5.585 22 H 0.422 0.578 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.102 0.898 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.266 0.734 31 H 0.172 0.828 32 H 0.141 0.859 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.086 -10.569 9.695 15.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.061 4.061 3 N -0.300 5.300 4 C 0.127 3.873 5 C -0.575 4.575 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.529 5.529 9 Si 0.727 3.273 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.201 1.201 13 C 0.321 3.679 14 O -0.401 6.401 15 C 0.030 3.970 16 C -0.245 4.245 17 C -0.040 4.040 18 C -0.255 4.255 19 C 0.318 3.682 20 O -0.439 6.439 21 N -0.218 5.218 22 H 0.261 0.739 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.120 0.880 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.189 0.811 32 H 0.159 0.841 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.466 -9.795 9.982 14.681 hybrid contribution 0.986 0.161 -0.872 1.326 sum -3.481 -9.634 9.111 13.709 Atomic orbital electron populations 1.22192 0.95807 1.02033 1.03004 1.22444 0.94579 0.84134 1.04919 1.48155 1.56404 1.13583 1.11882 1.19442 0.97618 0.91464 0.78816 1.21344 1.03262 1.28096 1.04764 0.92376 1.24919 0.96746 0.94702 0.97464 1.69915 1.32504 1.28447 1.22078 0.86531 0.83175 0.78164 0.79430 1.20133 1.21026 1.20126 1.17880 0.80575 0.87050 0.82383 1.90838 1.51946 1.15459 1.81892 1.20623 0.88267 0.95464 0.92623 1.21566 1.03461 0.97882 1.01569 1.21447 0.95267 0.96098 0.91225 1.22285 0.97223 1.01461 1.04543 1.17306 0.87480 0.83348 0.80065 1.90972 1.30176 1.72237 1.50490 1.43629 1.22091 1.31943 1.24113 0.73881 0.91207 0.91529 0.92525 0.90078 0.88005 0.94099 0.93304 0.92440 0.81116 0.84072 0.83188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 9.28 37.15 0.34 -1.62 16 2 C 0.06 0.87 5.64 -4.04 -0.02 0.84 16 3 N -0.57 -10.89 2.51 -176.16 -0.44 -11.33 16 4 C 0.24 5.91 5.14 -5.20 -0.03 5.89 16 5 C -0.54 -14.35 9.39 -34.44 -0.32 -14.67 16 6 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -25.32 13.29 55.43 0.74 -24.59 16 9 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.54 10.37 7.45 -12.31 -0.09 10.27 16 14 O -0.52 -12.25 16.46 5.33 0.09 -12.16 16 15 C 0.14 2.17 6.38 -82.33 -0.52 1.64 16 16 C -0.22 -2.51 7.35 -39.47 -0.29 -2.80 16 17 C -0.02 -0.18 10.08 -39.53 -0.40 -0.57 16 18 C -0.23 -2.70 10.00 -39.21 -0.39 -3.10 16 19 C 0.52 8.02 7.71 -15.17 -0.12 7.90 16 20 O -0.56 -10.49 17.93 4.95 0.09 -10.41 16 21 N -0.58 -9.03 5.27 -11.46 -0.06 -9.09 16 22 H 0.42 6.65 8.63 -40.82 -0.35 6.30 16 23 H 0.07 0.94 7.30 -51.93 -0.38 0.56 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.60 7.27 -51.93 -0.38 0.22 16 26 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 27 H 0.10 1.16 3.71 -52.75 -0.20 0.97 16 28 H 0.04 0.99 7.19 -51.93 -0.37 0.61 16 29 H 0.05 1.34 7.34 -51.93 -0.38 0.96 16 30 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.17 1.65 3.65 -52.49 -0.19 1.46 16 32 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 33 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 283.79 15.07 4.28 4.28 Total: -1.00 -32.89 283.79 -5.76 -38.65 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -3.49 Total: 3.14 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -1.94 Total: 5.45 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.23 Total: -45.01 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: 0.18 Total: -22.57 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.89 -5.76 -38.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229979311.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.550 kcal (2) G-P(sol) polarization free energy of solvation -32.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds