Wall clock time and date at job start Mon Mar 30 2020 18:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38309 * 119.98356 * 2 1 4 4 C 1.38216 * 120.12814 * 179.97438 * 3 2 1 5 5 C 1.38226 * 120.09457 * 359.74923 * 4 3 2 6 6 C 1.38621 * 119.96801 * 0.52495 * 5 4 3 7 7 O 1.35958 * 120.06128 * 179.74350 * 6 5 4 8 8 C 1.42895 * 117.00403 * 354.72359 * 7 6 5 9 9 C 1.52993 * 109.47383 * 184.84556 * 8 7 6 10 10 C 1.50704 * 115.54785 * 320.54102 * 9 8 7 11 11 H 1.07994 * 120.00125 * 272.34790 * 10 9 8 12 12 C 1.37879 * 119.99667 * 92.35509 * 10 9 8 13 13 N 1.31514 * 119.99854 * 178.83990 * 12 10 9 14 14 Si 1.86797 * 120.00151 * 358.82782 * 12 10 9 15 15 H 1.48501 * 109.46953 * 91.38653 * 14 12 10 16 16 H 1.48494 * 109.47199 * 211.38690 * 14 12 10 17 17 H 1.48504 * 109.47206 * 331.39052 * 14 12 10 18 18 C 1.52998 * 117.49903 * 174.87681 * 9 8 7 19 19 C 1.52997 * 60.03158 * 252.49193 * 18 9 8 20 20 C 1.38287 * 119.99247 * 180.02562 * 2 1 3 21 21 F 1.35107 * 120.04448 * 359.97438 * 20 2 1 22 22 H 1.08998 * 109.47432 * 269.97357 * 1 2 3 23 23 H 1.09003 * 109.47275 * 29.98269 * 1 2 3 24 24 H 1.09004 * 109.46802 * 149.97700 * 1 2 3 25 25 H 1.07997 * 119.93542 * 0.02598 * 3 2 1 26 26 H 1.07994 * 119.95404 * 180.02562 * 4 3 2 27 27 H 1.08001 * 120.02044 * 180.25173 * 5 4 3 28 28 H 1.09002 * 109.47039 * 64.84234 * 8 7 6 29 29 H 1.09003 * 109.47092 * 304.84534 * 8 7 6 30 30 H 0.97002 * 119.99923 * 179.97438 * 13 12 10 31 31 H 1.09000 * 117.50167 * 359.97438 * 18 9 8 32 32 H 1.09008 * 117.49798 * 144.99599 * 18 9 8 33 33 H 1.09008 * 117.49814 * 107.49833 * 19 18 9 34 34 H 1.08997 * 117.50689 * 252.51970 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1980 0.0000 4 6 3.5803 1.2015 0.0005 5 6 4.2764 0.0073 0.0063 6 6 3.5877 -1.1957 0.0006 7 8 4.2705 -2.3714 0.0010 8 6 5.6931 -2.2955 -0.1097 9 6 6.2727 -3.7076 -0.2134 10 6 5.6198 -4.7442 0.6643 11 1 5.9668 -4.8909 1.6764 12 6 4.5794 -5.5053 0.1750 13 7 4.0247 -6.4256 0.9332 14 14 3.9577 -5.2291 -1.5647 15 1 4.6857 -6.1252 -2.4986 16 1 2.5043 -5.5276 -1.6242 17 1 4.1890 -3.8149 -1.9544 18 6 7.7770 -3.8374 -0.4605 19 6 6.7875 -4.1621 -1.5814 20 6 2.1982 -1.1977 -0.0005 21 9 1.5234 -2.3682 -0.0005 22 1 -0.3634 -0.0005 1.0276 23 1 -0.3634 0.8901 -0.5136 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6568 2.1325 0.0004 26 1 4.1171 2.1385 0.0010 27 1 5.3564 0.0115 0.0108 28 1 6.1001 -1.7994 0.7715 29 1 5.9585 -1.7275 -1.0014 30 1 3.2925 -6.9608 0.5891 31 1 8.3538 -2.9168 -0.5497 32 1 8.2944 -4.6726 0.0116 33 1 6.7132 -3.4550 -2.4077 34 1 6.6536 -5.2108 -1.8465 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232319371.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:49 Heat of formation + Delta-G solvation = -51.611811 kcal Electronic energy + Delta-G solvation = -18452.160919 eV Core-core repulsion = 15458.033887 eV Total energy + Delta-G solvation = -2994.127032 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.80261 -40.97445 -39.13822 -37.75513 -34.24319 -33.35094 -31.07175 -28.57917 -28.00296 -27.17091 -23.51776 -23.33762 -22.57555 -20.86060 -18.97898 -18.60377 -17.98980 -17.57817 -17.12779 -16.71370 -16.08536 -15.83376 -15.53675 -15.07016 -14.80106 -14.58612 -14.27040 -14.05694 -13.67542 -13.29683 -13.07510 -13.00919 -12.78215 -12.47346 -12.17971 -12.11708 -12.03469 -11.75656 -11.47281 -11.01440 -10.70846 -10.26498 -9.67341 -9.08315 -8.32548 -6.37733 0.14944 0.34512 1.22864 1.36514 1.49344 2.27330 2.38299 2.62703 3.07471 3.16369 3.35627 3.73924 3.89169 4.09956 4.16962 4.22395 4.24797 4.32467 4.38309 4.42033 4.66541 4.71680 4.80045 4.81775 4.97427 5.01145 5.13616 5.21300 5.21688 5.35319 5.43720 5.44693 5.65994 5.85943 6.22256 6.53437 6.74501 7.34747 8.83299 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.024254 B = 0.008630 C = 0.007032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.173970 B = 3243.748504 C = 3980.757568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.087 4.087 3 C -0.134 4.134 4 C -0.072 4.072 5 C -0.200 4.200 6 C 0.076 3.924 7 O -0.314 6.314 8 C 0.102 3.898 9 C -0.042 4.042 10 C -0.480 4.480 11 H 0.033 0.967 12 C 0.035 3.965 13 N -0.951 5.951 14 Si 0.943 3.057 15 H -0.273 1.273 16 H -0.316 1.316 17 H -0.236 1.236 18 C -0.140 4.140 19 C -0.202 4.202 20 C 0.006 3.994 21 F -0.161 7.161 22 H 0.083 0.917 23 H 0.107 0.893 24 H 0.052 0.948 25 H 0.172 0.828 26 H 0.173 0.827 27 H 0.153 0.847 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.262 0.738 31 H 0.120 0.880 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.987 19.814 -5.388 20.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 C -0.152 4.152 4 C -0.090 4.090 5 C -0.218 4.218 6 C 0.029 3.971 7 O -0.227 6.227 8 C 0.028 3.972 9 C -0.043 4.043 10 C -0.517 4.517 11 H 0.051 0.949 12 C -0.162 4.162 13 N -0.591 5.591 14 Si 0.771 3.229 15 H -0.199 1.199 16 H -0.244 1.244 17 H -0.159 1.159 18 C -0.177 4.177 19 C -0.239 4.239 20 C -0.014 4.014 21 F -0.140 7.140 22 H 0.102 0.898 23 H 0.125 0.875 24 H 0.072 0.928 25 H 0.190 0.810 26 H 0.190 0.810 27 H 0.170 0.830 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.138 0.862 32 H 0.103 0.897 33 H 0.123 0.877 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.187 19.429 -5.365 20.191 hybrid contribution -0.565 -1.274 -0.288 1.423 sum -1.752 18.155 -5.653 19.095 Atomic orbital electron populations 1.20811 0.88329 1.04056 1.03681 1.20181 0.98249 0.90621 0.99728 1.21244 0.94359 0.97079 1.02497 1.21468 0.94296 0.98000 0.95237 1.21476 1.01619 0.90794 1.07937 1.19742 0.91024 0.87879 0.98443 1.86404 1.22254 1.27019 1.87034 1.22496 0.76929 0.97176 1.00633 1.19364 0.95334 0.93039 0.96598 1.20324 1.16103 1.16876 0.98416 0.94884 1.25636 0.95634 0.93790 1.01149 1.70024 1.25944 1.24040 1.39079 0.85836 0.75407 0.80523 0.81158 1.19926 1.24435 1.15882 1.22945 0.90866 1.03158 1.00698 1.23124 1.06883 1.01129 0.92732 1.17614 0.87689 0.82333 1.13751 1.91411 1.80181 1.47584 1.94813 0.89799 0.87484 0.92848 0.81027 0.81002 0.82983 0.91259 0.90820 0.92968 0.86169 0.89735 0.87675 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.45 9.83 71.23 0.70 -1.75 16 2 C -0.09 -2.43 5.88 -19.84 -0.12 -2.55 16 3 C -0.13 -2.72 9.70 22.28 0.22 -2.51 16 4 C -0.07 -1.46 10.04 22.26 0.22 -1.24 16 5 C -0.20 -5.61 9.03 22.36 0.20 -5.41 16 6 C 0.08 2.98 6.69 22.53 0.15 3.14 16 7 O -0.31 -14.81 7.14 -93.08 -0.66 -15.47 16 8 C 0.10 4.05 4.65 71.98 0.33 4.39 16 9 C -0.04 -1.95 1.37 -52.91 -0.07 -2.02 16 10 C -0.48 -28.54 8.90 25.60 0.23 -28.31 16 11 H 0.03 2.18 8.06 -2.91 -0.02 2.15 16 12 C 0.04 2.22 5.41 84.66 0.46 2.67 16 13 N -0.95 -63.81 13.96 21.45 0.30 -63.51 16 14 Si 0.94 50.68 23.66 68.60 1.62 52.30 16 15 H -0.27 -13.72 7.05 99.48 0.70 -13.02 16 16 H -0.32 -17.77 7.11 99.48 0.71 -17.06 16 17 H -0.24 -11.90 5.79 99.48 0.58 -11.32 16 18 C -0.14 -5.08 9.95 30.59 0.30 -4.78 16 19 C -0.20 -8.13 7.27 30.62 0.22 -7.91 16 20 C 0.01 0.22 7.25 22.45 0.16 0.39 16 21 F -0.16 -7.55 16.32 44.97 0.73 -6.81 16 22 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.11 1.53 8.09 -2.39 -0.02 1.51 16 24 H 0.05 1.34 7.64 -2.38 -0.02 1.33 16 25 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16 26 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 27 H 0.15 3.60 6.33 -2.91 -0.02 3.58 16 28 H 0.07 2.47 7.72 -2.39 -0.02 2.45 16 29 H 0.07 2.39 7.42 -2.39 -0.02 2.37 16 30 H 0.26 16.72 8.31 -92.71 -0.77 15.95 16 31 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 32 H 0.08 3.21 8.14 -2.38 -0.02 3.19 16 33 H 0.11 3.58 8.08 -2.38 -0.02 3.56 16 34 H 0.07 3.09 6.64 -2.39 -0.02 3.07 16 Total: -1.00 -78.74 285.83 5.96 -72.78 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 0.96 Total: 6.60 kcal Atomic # 6 Polarization: -48.90 SS G_CDS: 3.01 Total: -45.89 kcal Atomic # 7 Polarization: -63.81 SS G_CDS: 0.30 Total: -63.51 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.66 Total: -15.47 kcal Atomic # 9 Polarization: -7.55 SS G_CDS: 0.73 Total: -6.81 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 1.62 Total: 52.30 kcal Total: -78.74 5.96 -72.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232319371.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.169 kcal (2) G-P(sol) polarization free energy of solvation -78.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds