Wall clock time and date at job start Mon Mar 30 2020 18:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00439 * 2 1 4 4 C 1.50697 * 109.46890 * 270.00234 * 3 2 1 5 5 H 1.07997 * 119.99933 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99851 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99930 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00055 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46976 * 60.00178 * 8 6 4 10 10 H 1.48500 * 109.47054 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47320 * 300.00317 * 8 6 4 12 12 C 1.34777 * 119.99784 * 179.97438 * 2 1 3 13 13 O 1.21281 * 120.00115 * 180.02562 * 12 2 1 14 14 C 1.50702 * 120.00139 * 0.02562 * 12 2 1 15 15 O 1.42894 * 109.47522 * 179.97438 * 14 12 2 16 16 C 1.35910 * 117.00621 * 180.02562 * 15 14 12 17 17 C 1.39138 * 120.47706 * 180.24394 * 16 15 14 18 18 C 1.38535 * 118.37336 * 180.24194 * 17 16 15 19 19 C 1.38262 * 119.22035 * 359.47237 * 18 17 16 20 20 N 1.31844 * 120.88422 * 0.30388 * 19 18 17 21 21 C 1.31834 * 121.78446 * 359.97438 * 20 19 18 22 22 H 1.09007 * 109.47181 * 270.00187 * 1 2 3 23 23 H 1.09001 * 109.47410 * 29.99835 * 1 2 3 24 24 H 1.09001 * 109.47702 * 150.00513 * 1 2 3 25 25 H 1.09010 * 109.46502 * 29.99903 * 3 2 1 26 26 H 1.09000 * 109.47370 * 149.99409 * 3 2 1 27 27 H 0.96996 * 119.99736 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.46741 * 59.99741 * 14 12 2 29 29 H 1.08998 * 109.47583 * 300.00372 * 14 12 2 30 30 H 1.07999 * 120.81005 * 0.02562 * 17 16 15 31 31 H 1.08002 * 120.39207 * 179.75678 * 18 17 16 32 32 H 1.08000 * 119.55595 * 180.28266 * 19 18 17 33 33 H 1.07997 * 119.66066 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0980 1.0957 -2.2416 6 6 3.1261 2.8778 -1.6728 7 7 3.5526 3.6184 -0.6731 8 14 3.4380 3.4167 -3.4339 9 1 2.1407 3.5936 -4.1346 10 1 4.1794 4.7034 -3.4339 11 1 4.2413 2.3819 -4.1333 12 6 2.1388 -1.1672 0.0005 13 8 3.3516 -1.1673 0.0010 14 6 1.3853 -2.4723 0.0005 15 8 2.3137 -3.5585 0.0005 16 6 1.7943 -4.8144 0.0000 17 6 2.6327 -5.9249 0.0050 18 6 2.0566 -7.1847 -0.0009 19 6 0.6785 -7.2968 -0.0004 20 7 -0.0877 -6.2239 -0.0005 21 6 0.4207 -5.0075 -0.0004 22 1 -0.3634 0.0000 1.0277 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5137 25 1 1.6084 2.0283 0.5139 26 1 3.1499 1.1383 0.5139 27 1 4.0288 4.4446 -0.8504 28 1 0.7589 -2.5302 -0.8897 29 1 0.7582 -2.5299 0.8902 30 1 3.7063 -5.8074 0.0099 31 1 2.6766 -8.0691 -0.0012 32 1 0.2237 -8.2763 -0.0004 33 1 -0.2391 -4.1525 -0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259879922.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:57 Heat of formation + Delta-G solvation = -53.013208 kcal Electronic energy + Delta-G solvation = -17530.656994 eV Core-core repulsion = 14556.389154 eV Total energy + Delta-G solvation = -2974.267840 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.73501 -40.62538 -38.89785 -36.65946 -34.78193 -33.40036 -31.57153 -30.60348 -28.78246 -27.28389 -25.12879 -24.45703 -23.67965 -20.38245 -19.48018 -18.73566 -18.10337 -17.72899 -17.47214 -17.17882 -16.90699 -16.15566 -15.81652 -15.31106 -14.72095 -14.64705 -14.16706 -14.10331 -13.78143 -13.64590 -13.50087 -13.18542 -13.06260 -12.83533 -12.55802 -12.46138 -12.21345 -11.74797 -10.78879 -10.69470 -10.65860 -10.42595 -9.52437 -9.49106 -8.24666 -6.39670 0.13546 0.27560 1.36249 1.40731 1.47259 1.57265 1.65024 2.36190 2.64648 2.81962 3.05481 3.44738 3.53498 3.72089 3.92597 4.00263 4.03455 4.11938 4.39713 4.46481 4.63172 4.71157 4.93600 4.97181 5.01442 5.14657 5.19057 5.49786 5.56227 5.77165 6.02218 6.14126 6.61601 6.69979 6.95158 7.21892 7.36288 8.82605 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.039931 B = 0.004254 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.037416 B = 6580.920216 C = 6759.600655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.602 5.602 3 C 0.259 3.741 4 C -0.548 4.548 5 H 0.055 0.945 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.968 3.032 9 H -0.258 1.258 10 H -0.278 1.278 11 H -0.279 1.279 12 C 0.494 3.506 13 O -0.586 6.586 14 C 0.053 3.947 15 O -0.315 6.315 16 C 0.061 3.939 17 C -0.124 4.124 18 C -0.120 4.120 19 C 0.052 3.948 20 N -0.472 5.472 21 C 0.008 3.992 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.098 0.902 25 H 0.032 0.968 26 H -0.003 1.003 27 H 0.268 0.732 28 H 0.121 0.879 29 H 0.127 0.873 30 H 0.145 0.855 31 H 0.177 0.823 32 H 0.189 0.811 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.837 -19.110 1.333 21.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.335 5.335 3 C 0.138 3.862 4 C -0.586 4.586 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.182 1.182 10 H -0.203 1.203 11 H -0.205 1.205 12 C 0.282 3.718 13 O -0.466 6.466 14 C -0.025 4.025 15 O -0.227 6.227 16 C 0.013 3.987 17 C -0.151 4.151 18 C -0.139 4.139 19 C -0.105 4.105 20 N -0.182 5.182 21 C -0.149 4.149 22 H 0.097 0.903 23 H 0.091 0.909 24 H 0.116 0.884 25 H 0.050 0.950 26 H 0.016 0.984 27 H 0.077 0.923 28 H 0.139 0.861 29 H 0.145 0.855 30 H 0.163 0.837 31 H 0.195 0.805 32 H 0.206 0.794 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -9.844 -18.924 1.390 21.377 hybrid contribution 1.372 1.038 -0.661 1.843 sum -8.472 -17.887 0.728 19.805 Atomic orbital electron populations 1.22101 0.77107 1.04650 1.03305 1.48085 1.08778 1.05675 1.70923 1.18821 0.91234 0.79945 0.96199 1.21694 1.37228 1.06672 0.93044 0.92658 1.25867 0.94791 0.96396 1.02059 1.70040 1.38785 1.14783 1.33144 0.85461 0.78933 0.77323 0.79062 1.18237 1.20291 1.20490 1.20736 0.87787 0.86109 0.77168 1.90683 1.16589 1.87847 1.51482 1.22666 0.91036 0.82401 1.06361 1.86158 1.35711 1.12205 1.88619 1.20440 0.94510 0.85019 0.98719 1.21326 1.01295 0.90766 1.01681 1.22392 0.96702 0.97460 0.97356 1.23274 0.91010 0.98195 0.98050 1.67575 1.41178 0.98927 1.10515 1.23188 0.91375 0.96927 1.03428 0.90312 0.90934 0.88404 0.95028 0.98439 0.92307 0.86101 0.85519 0.83698 0.80517 0.79447 0.80650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.87 10.24 127.77 1.31 3.18 16 2 N -0.60 -24.85 2.86 -851.12 -2.43 -27.28 16 3 C 0.26 13.90 5.16 85.63 0.44 14.34 16 4 C -0.55 -31.53 9.39 25.60 0.24 -31.29 16 5 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 6 C 0.01 0.47 5.46 84.65 0.46 0.93 16 7 N -0.93 -56.17 13.29 21.45 0.28 -55.88 16 8 Si 0.97 44.83 29.54 68.60 2.03 46.86 16 9 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 C 0.49 20.76 7.75 87.66 0.68 21.44 16 13 O -0.59 -31.95 16.08 16.00 0.26 -31.69 16 14 C 0.05 1.47 3.78 71.24 0.27 1.74 16 15 O -0.32 -10.21 9.68 -73.50 -0.71 -10.92 16 16 C 0.06 1.56 6.71 22.60 0.15 1.71 16 17 C -0.12 -2.71 10.13 22.56 0.23 -2.48 16 18 C -0.12 -1.83 10.11 22.35 0.23 -1.61 16 19 C 0.05 0.86 11.18 84.70 0.95 1.81 16 20 N -0.47 -10.28 10.35 -195.44 -2.02 -12.30 16 21 C 0.01 0.17 10.22 84.81 0.87 1.04 16 22 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 23 H 0.07 2.07 8.07 -2.39 -0.02 2.05 16 24 H 0.10 1.80 6.44 -2.39 -0.02 1.78 16 25 H 0.03 1.69 8.07 -2.38 -0.02 1.67 16 26 H 0.00 -0.16 7.42 -2.39 -0.02 -0.18 16 27 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 28 H 0.12 2.58 6.94 -2.39 -0.02 2.56 16 29 H 0.13 2.52 7.65 -2.39 -0.02 2.50 16 30 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 31 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 32 H 0.19 1.74 8.06 -2.91 -0.02 1.71 16 33 H 0.18 2.97 6.32 -2.91 -0.02 2.95 16 Total: -1.00 -80.63 292.58 4.34 -76.29 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: 1.11 Total: 4.12 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 5.82 Total: 10.81 kcal Atomic # 7 Polarization: -91.30 SS G_CDS: -4.17 Total: -95.47 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -0.45 Total: -42.61 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -80.63 4.34 -76.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259879922.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.278 kcal (2) G-P(sol) polarization free energy of solvation -80.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds