Wall clock time and date at job start Mon Mar 30 2020 18:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47275 * 2 1 4 4 C 1.46498 * 119.99823 * 4.97098 * 3 2 1 5 5 C 1.50703 * 109.47071 * 269.99753 * 4 3 2 6 6 H 1.07991 * 119.99884 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99660 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00262 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99706 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47482 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47199 * 120.00410 * 9 7 5 12 12 H 1.48500 * 109.47050 * 240.00239 * 9 7 5 13 13 C 1.34774 * 119.99964 * 184.97305 * 3 2 1 14 14 O 1.21531 * 119.99974 * 184.39738 * 13 3 2 15 15 C 1.47975 * 119.99946 * 4.38953 * 13 3 2 16 16 C 1.39423 * 119.74065 * 114.09683 * 15 13 3 17 17 C 1.38462 * 119.06896 * 180.02562 * 16 15 13 18 18 C 1.38732 * 118.53253 * 359.97438 * 17 16 15 19 19 C 1.38410 * 119.38953 * 0.02562 * 18 17 16 20 20 N 1.31726 * 120.90139 * 0.02562 * 19 18 17 21 21 O 1.41596 * 119.20211 * 179.97438 * 20 19 18 22 22 H 1.08992 * 109.47228 * 59.99625 * 1 2 3 23 23 H 1.08996 * 109.47337 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46679 * 299.99668 * 1 2 3 25 25 H 1.09006 * 109.46423 * 239.99891 * 2 1 3 26 26 H 1.08995 * 109.46987 * 120.00843 * 2 1 3 27 27 H 1.09004 * 109.47267 * 30.00045 * 4 3 2 28 28 H 1.09006 * 109.47238 * 150.00043 * 4 3 2 29 29 H 0.97006 * 119.99844 * 180.02562 * 8 7 5 30 30 H 1.08004 * 120.46635 * 359.97438 * 16 15 13 31 31 H 1.08000 * 120.73326 * 180.02562 * 17 16 15 32 32 H 1.07993 * 120.30502 * 179.72808 * 18 17 16 33 33 H 1.07997 * 119.54517 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.0709 2.4931 0.1099 5 6 0.6300 2.9154 -1.2679 6 1 1.0165 2.4063 -2.1382 7 6 -0.2669 3.9520 -1.4171 8 7 -0.7372 4.5724 -0.3571 9 14 -0.8129 4.4759 -3.1249 10 1 -0.1427 3.6259 -4.1415 11 1 -2.2850 4.3208 -3.2433 12 1 -0.4455 5.8974 -3.3477 13 6 3.3393 1.6289 -0.1012 14 8 3.7516 2.7693 -0.0209 15 6 4.2876 0.5123 -0.3098 16 6 5.0020 0.4255 -1.5040 17 6 5.8852 -0.6254 -1.6847 18 6 6.0260 -1.5555 -0.6650 19 6 5.2855 -1.4089 0.4951 20 7 4.4509 -0.4005 0.6420 21 8 3.7108 -0.2857 1.8437 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 0.2030 2.1751 0.6877 28 1 1.5528 3.3330 0.6106 29 1 -1.3685 5.3014 -0.4622 30 1 4.8677 1.1671 -2.2776 31 1 6.4526 -0.7185 -2.5989 32 1 6.7036 -2.3889 -0.7774 33 1 5.3928 -2.1318 1.2903 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264002142.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:58 Heat of formation + Delta-G solvation = 5.628867 kcal Electronic energy + Delta-G solvation = -18530.703918 eV Core-core repulsion = 15558.978990 eV Total energy + Delta-G solvation = -2971.724929 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.53704 -40.34821 -37.37669 -35.62819 -34.81954 -33.07674 -31.49727 -31.03311 -29.72167 -26.37431 -25.11758 -24.97658 -23.53589 -20.99281 -19.08548 -18.79373 -18.49139 -17.73468 -17.37845 -16.58741 -16.31461 -16.12490 -15.85996 -15.77231 -14.94953 -14.73605 -14.30715 -13.51823 -13.41529 -13.20496 -13.03399 -12.83446 -12.65599 -12.59918 -12.38320 -12.14169 -11.99842 -11.67941 -11.15678 -10.66958 -10.62566 -10.61806 -9.93296 -9.45919 -8.22759 -6.38652 -0.61008 -0.29642 1.10479 1.37763 1.40336 1.52482 1.77166 1.99707 2.23671 2.39478 3.05251 3.16123 3.51786 3.62547 3.72003 3.92614 4.03681 4.21645 4.41505 4.56391 4.76562 4.81937 4.88733 4.90628 5.04445 5.06289 5.22144 5.35092 5.49581 5.70458 5.74429 5.86029 6.00292 6.48307 6.68025 7.02704 7.31668 8.85848 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.030048 B = 0.006602 C = 0.006154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.603659 B = 4239.809734 C = 4548.599033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.102 3.898 3 N -0.574 5.574 4 C 0.254 3.746 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.976 3.024 10 H -0.260 1.260 11 H -0.270 1.270 12 H -0.281 1.281 13 C 0.551 3.449 14 O -0.583 6.583 15 C 0.041 3.959 16 C -0.084 4.084 17 C -0.044 4.044 18 C -0.077 4.077 19 C 0.068 3.932 20 N -0.128 5.128 21 O -0.605 6.605 22 H 0.061 0.939 23 H 0.095 0.905 24 H 0.041 0.959 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.034 0.966 28 H -0.010 1.010 29 H 0.268 0.732 30 H 0.171 0.829 31 H 0.218 0.782 32 H 0.231 0.769 33 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.417 -18.294 -8.632 24.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 N -0.303 5.303 4 C 0.134 3.866 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.800 3.200 10 H -0.183 1.183 11 H -0.196 1.196 12 H -0.207 1.207 13 C 0.336 3.664 14 O -0.464 6.464 15 C -0.086 4.086 16 C -0.104 4.104 17 C -0.069 4.069 18 C -0.095 4.095 19 C -0.079 4.079 20 N 0.190 4.810 21 O -0.658 6.658 22 H 0.080 0.920 23 H 0.113 0.887 24 H 0.060 0.940 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.052 0.948 28 H 0.008 0.992 29 H 0.077 0.923 30 H 0.189 0.811 31 H 0.234 0.766 32 H 0.247 0.753 33 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 14.180 -17.518 -8.119 23.956 hybrid contribution -0.894 1.100 0.287 1.446 sum 13.286 -16.418 -7.833 22.526 Atomic orbital electron populations 1.21903 0.93344 1.02851 1.02419 1.21836 0.96747 0.81304 1.02120 1.48163 1.05603 1.09154 1.67392 1.18985 0.86951 0.83354 0.97301 1.21571 1.25899 1.17571 0.92212 0.92120 1.25964 0.95960 0.95634 1.01774 1.70103 1.31944 1.23609 1.31356 0.85243 0.78276 0.78014 0.78514 1.18338 1.19560 1.20710 1.18153 0.83053 0.87564 0.77583 1.90731 1.78409 1.23758 1.53523 1.21130 1.01863 0.92746 0.92878 1.22193 0.93921 1.00983 0.93300 1.22512 0.93264 0.89469 1.01658 1.22765 0.96815 1.01054 0.88817 1.23591 0.90449 0.91077 1.02815 1.43319 1.17208 1.09423 1.11084 1.97593 1.62150 1.95688 1.10386 0.91993 0.88654 0.94032 0.91295 0.90261 0.94834 0.99186 0.92338 0.81107 0.76563 0.75272 0.77743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.77 8.78 71.98 0.63 -5.14 16 2 C 0.10 4.22 5.68 86.38 0.49 4.71 16 3 N -0.57 -29.51 2.84 -829.41 -2.36 -31.87 16 4 C 0.25 15.21 4.57 85.63 0.39 15.60 16 5 C -0.53 -31.62 8.43 25.60 0.22 -31.40 16 6 H 0.06 3.47 7.81 -2.92 -0.02 3.44 16 7 C 0.01 0.32 5.46 84.65 0.46 0.78 16 8 N -0.93 -58.12 13.29 21.45 0.28 -57.84 16 9 Si 0.98 44.93 29.54 68.60 2.03 46.95 16 10 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 C 0.55 27.72 6.48 86.83 0.56 28.29 16 14 O -0.58 -34.33 16.66 -3.81 -0.06 -34.40 16 15 C 0.04 1.48 5.29 41.85 0.22 1.70 16 16 C -0.08 -1.81 9.83 22.61 0.22 -1.59 16 17 C -0.04 -0.33 10.16 22.44 0.23 -0.11 16 18 C -0.08 -0.44 10.11 22.43 0.23 -0.22 16 19 C 0.07 1.23 10.68 84.75 0.91 2.14 16 20 N -0.13 -4.38 3.31 -184.89 -0.61 -4.99 16 21 O -0.61 -29.81 16.69 -38.78 -0.65 -30.46 16 22 H 0.06 2.62 7.07 -2.39 -0.02 2.60 16 23 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 24 H 0.04 1.78 6.69 -2.39 -0.02 1.77 16 25 H 0.07 2.43 7.84 -2.38 -0.02 2.41 16 26 H 0.08 3.50 5.58 -2.39 -0.01 3.48 16 27 H 0.03 2.05 5.82 -2.38 -0.01 2.03 16 28 H -0.01 -0.69 7.37 -2.38 -0.02 -0.71 16 29 H 0.27 15.55 8.31 -92.70 -0.77 14.77 16 30 H 0.17 3.45 8.06 -2.91 -0.02 3.43 16 31 H 0.22 -0.71 8.06 -2.91 -0.02 -0.73 16 32 H 0.23 -1.48 8.06 -2.91 -0.02 -1.50 16 33 H 0.21 2.65 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -99.49 285.98 4.31 -95.19 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: 1.12 Total: 2.65 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: 4.56 Total: 14.76 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -2.69 Total: -94.69 kcal Atomic # 8 Polarization: -64.15 SS G_CDS: -0.71 Total: -64.86 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -99.49 4.31 -95.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264002142.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.815 kcal (2) G-P(sol) polarization free energy of solvation -99.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds