Wall clock time and date at job start Mon Mar 30 2020 18:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46495 * 109.47370 * 2 1 4 4 C 1.36968 * 119.99809 * 274.52208 * 3 2 1 5 5 H 1.07999 * 120.00414 * 126.33184 * 4 3 2 6 6 C 1.38986 * 120.00051 * 306.31987 * 4 3 2 7 7 N 1.31413 * 120.00319 * 183.70969 * 6 4 3 8 8 Si 1.86796 * 119.99714 * 3.71633 * 6 4 3 9 9 H 1.48500 * 109.47345 * 94.59547 * 8 6 4 10 10 H 1.48506 * 109.47253 * 214.59459 * 8 6 4 11 11 H 1.48502 * 109.47414 * 334.59235 * 8 6 4 12 12 C 1.34781 * 120.00126 * 94.51853 * 3 2 1 13 13 O 1.21636 * 119.99803 * 3.80191 * 12 3 2 14 14 C 1.47325 * 119.99743 * 183.79602 * 12 3 2 15 15 C 1.37422 * 128.56968 * 353.45423 * 14 12 3 16 16 O 1.33517 * 106.32395 * 179.97438 * 15 14 12 17 17 N 1.20658 * 113.15957 * 359.97438 * 16 15 14 18 18 C 1.30005 * 112.32111 * 0.02562 * 17 16 15 19 19 C 1.50700 * 127.33161 * 179.97438 * 18 17 16 20 20 C 1.53003 * 117.50249 * 8.78611 * 19 18 17 21 21 C 1.52997 * 117.49971 * 300.12642 * 19 18 17 22 22 H 1.09005 * 109.47349 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47357 * 300.00193 * 1 2 3 24 24 H 1.09000 * 109.47014 * 60.00389 * 1 2 3 25 25 H 1.08999 * 109.47217 * 239.99056 * 2 1 3 26 26 H 1.09002 * 109.46731 * 120.00070 * 2 1 3 27 27 H 0.96997 * 119.99949 * 180.02562 * 7 6 4 28 28 H 1.08001 * 126.84052 * 359.97168 * 15 14 12 29 29 H 1.09006 * 115.54826 * 154.45879 * 19 18 17 30 30 H 1.09000 * 117.49614 * 0.02562 * 20 19 18 31 31 H 1.08998 * 117.49785 * 145.01947 * 20 19 18 32 32 H 1.09010 * 117.49590 * 214.97916 * 21 19 18 33 33 H 1.08994 * 117.50164 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1584 2.0580 -1.1825 5 1 1.6861 3.0204 -1.3132 6 6 2.9087 1.5063 -2.2143 7 7 3.1040 2.1869 -3.3214 8 14 3.6393 -0.2026 -2.0273 9 1 2.7192 -1.2027 -2.6260 10 1 4.9510 -0.2589 -2.7215 11 1 3.8289 -0.5050 -0.5858 12 6 2.3297 1.9859 1.1636 13 8 2.2714 1.3635 2.2071 14 6 2.7407 3.4006 1.1715 15 6 2.9839 4.2282 0.1018 16 8 3.3262 5.4128 0.6139 17 7 3.3261 5.4260 1.8204 18 6 2.9913 4.2765 2.3268 19 6 2.8831 3.9175 3.7864 20 6 2.9943 5.0548 4.8039 21 6 4.1430 4.0559 4.6433 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5140 -0.8899 26 1 1.8932 -0.5139 0.8900 27 1 3.6272 1.8017 -4.0415 28 1 2.9124 3.9715 -0.9449 29 1 2.2032 3.0980 4.0198 30 1 3.1453 6.0627 4.4174 31 1 2.3879 4.9833 5.7068 32 1 4.2918 3.3277 5.4407 33 1 5.0503 4.4062 4.1512 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280975843.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:24 Heat of formation + Delta-G solvation = 64.636181 kcal Electronic energy + Delta-G solvation = -18652.620343 eV Core-core repulsion = 15683.454163 eV Total energy + Delta-G solvation = -2969.166180 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.10639 -38.86388 -37.14335 -35.20584 -32.71495 -32.30111 -31.32285 -29.70373 -25.34462 -24.41953 -23.57575 -22.33370 -22.05777 -19.72908 -19.33233 -18.00324 -16.91775 -16.33012 -16.05543 -15.44033 -15.08134 -14.58204 -14.09423 -13.84139 -13.35368 -12.82145 -12.61919 -12.23281 -12.16123 -11.71477 -11.42033 -11.39217 -11.30688 -11.11093 -10.88017 -10.80105 -10.23477 -10.12463 -9.77807 -9.27704 -9.01235 -8.92863 -8.81566 -7.80033 -6.66622 -4.52823 2.02965 2.34496 2.96887 3.12631 3.16605 3.77653 3.95665 4.03442 4.24207 4.28810 4.59829 4.77503 4.82675 5.16577 5.25967 5.60444 5.63323 5.76626 5.88992 5.94172 5.96211 6.00072 6.06251 6.27310 6.31978 6.37611 6.50863 6.58003 6.71610 6.78483 7.32154 7.85564 7.94475 8.72940 8.90678 9.12652 9.50315 10.38309 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.025292 B = 0.008234 C = 0.007068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.804707 B = 3399.520364 C = 3960.778981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.104 3.896 3 N -0.464 5.464 4 C -0.363 4.363 5 H 0.108 0.892 6 C 0.074 3.926 7 N -0.860 5.860 8 Si 0.890 3.110 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.258 1.258 12 C 0.569 3.431 13 O -0.587 6.587 14 C -0.231 4.231 15 C 0.006 3.994 16 O 0.071 5.929 17 N -0.378 5.378 18 C 0.081 3.919 19 C -0.070 4.070 20 C -0.172 4.172 21 C -0.162 4.162 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.281 0.719 28 H 0.261 0.739 29 H 0.134 0.866 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.561 0.847 6.371 6.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.019 4.019 3 N -0.185 5.185 4 C -0.490 4.490 5 H 0.125 0.875 6 C -0.136 4.136 7 N -0.494 5.494 8 Si 0.718 3.282 9 H -0.198 1.198 10 H -0.215 1.215 11 H -0.183 1.183 12 C 0.360 3.640 13 O -0.471 6.471 14 C -0.238 4.238 15 C -0.074 4.074 16 O 0.014 5.986 17 N -0.088 5.088 18 C -0.082 4.082 19 C -0.089 4.089 20 C -0.209 4.209 21 C -0.200 4.200 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.276 0.724 29 H 0.152 0.848 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.181 1.717 7.119 7.325 hybrid contribution 0.072 -1.765 -0.594 1.864 sum -0.108 -0.049 6.524 6.525 Atomic orbital electron populations 1.22031 0.96373 1.00801 1.02374 1.21580 0.94236 0.85344 1.00716 1.43416 1.57656 1.11694 1.05776 1.19088 1.33172 1.06090 0.90621 0.87500 1.25540 0.94190 0.98772 0.95109 1.69622 1.36804 1.37592 1.05378 0.86676 0.78581 0.83437 0.79481 1.19771 1.21496 1.18261 1.17116 0.78455 0.84495 0.83978 1.90623 1.58092 1.66003 1.32415 1.22092 1.13228 0.97204 0.91309 1.28534 0.93699 0.82272 1.02925 1.84525 1.65190 1.33887 1.14984 1.73455 1.21332 1.22116 0.91879 1.23751 0.99803 0.88768 0.95860 1.20229 1.02781 1.01576 0.84279 1.23016 1.02204 0.95471 1.00224 1.22962 0.92745 1.02289 1.02011 0.92887 0.92840 0.91882 0.92750 0.90759 0.90897 0.72422 0.84825 0.88313 0.88402 0.88183 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 10.22 37.15 0.38 -2.46 16 2 C 0.10 2.17 4.62 -4.05 -0.02 2.15 16 3 N -0.46 -10.71 2.08 -116.06 -0.24 -10.95 16 4 C -0.36 -8.58 7.06 -14.98 -0.11 -8.68 16 5 H 0.11 2.58 6.02 -52.49 -0.32 2.26 16 6 C 0.07 1.77 5.50 -17.45 -0.10 1.68 16 7 N -0.86 -21.43 13.96 55.50 0.77 -20.65 16 8 Si 0.89 19.52 24.82 -169.99 -4.22 15.30 16 9 H -0.27 -5.74 7.10 56.52 0.40 -5.34 16 10 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.26 -5.80 6.33 56.52 0.36 -5.44 16 12 C 0.57 13.42 7.63 -12.56 -0.10 13.33 16 13 O -0.59 -14.50 15.38 5.25 0.08 -14.42 16 14 C -0.23 -5.05 6.33 -102.89 -0.65 -5.70 16 15 C 0.01 0.12 10.62 30.44 0.32 0.44 16 16 O 0.07 1.39 11.06 18.59 0.21 1.59 16 17 N -0.38 -7.46 11.71 34.79 0.41 -7.05 16 18 C 0.08 1.62 7.07 -79.76 -0.56 1.06 16 19 C -0.07 -1.21 5.87 -91.77 -0.54 -1.75 16 20 C -0.17 -2.40 10.17 -26.69 -0.27 -2.67 16 21 C -0.16 -2.36 10.24 -26.70 -0.27 -2.63 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 25 H 0.05 1.14 3.36 -51.93 -0.17 0.97 16 26 H 0.07 1.57 7.24 -51.93 -0.38 1.19 16 27 H 0.28 6.62 8.31 -40.82 -0.34 6.28 16 28 H 0.26 5.32 5.01 -52.49 -0.26 5.06 16 29 H 0.13 2.42 7.40 -51.93 -0.38 2.04 16 30 H 0.10 1.42 7.97 -51.93 -0.41 1.01 16 31 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.10 1.26 8.14 -51.92 -0.42 0.84 16 33 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 279.05 15.07 4.21 4.21 Total: -1.00 -26.63 279.05 -4.34 -30.97 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -3.64 Total: 6.24 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -1.91 Total: -5.24 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.94 Total: -38.66 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.29 Total: -12.82 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.22 Total: 15.30 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -26.63 -4.34 -30.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280975843.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.608 kcal (2) G-P(sol) polarization free energy of solvation -26.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds