Wall clock time and date at job start Mon Mar 30 2020 18:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47106 * 2 1 4 4 C 1.50701 * 109.47180 * 240.00478 * 2 1 3 5 5 H 1.07997 * 119.99783 * 239.99670 * 4 2 1 6 6 C 1.37878 * 119.99970 * 60.00009 * 4 2 1 7 7 N 1.31511 * 120.00359 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99920 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47227 * 59.99693 * 8 6 4 10 10 H 1.48494 * 109.47336 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47065 * 299.99887 * 8 6 4 12 12 N 1.46499 * 109.47320 * 120.00325 * 2 1 3 13 13 C 1.34781 * 119.99657 * 275.00184 * 12 2 1 14 14 O 1.21605 * 119.99979 * 359.97438 * 13 12 2 15 15 C 1.47396 * 119.99547 * 180.02562 * 13 12 2 16 16 C 1.37359 * 128.56745 * 359.97438 * 15 13 12 17 17 O 1.33490 * 106.34333 * 180.02562 * 16 15 13 18 18 N 1.20659 * 113.15769 * 359.97438 * 17 16 15 19 19 C 1.30014 * 112.30302 * 0.02562 * 18 17 16 20 20 C 1.50694 * 127.34076 * 179.73697 * 19 18 17 21 21 C 1.53006 * 117.49899 * 8.77462 * 20 19 18 22 22 C 1.53004 * 117.49806 * 300.11824 * 20 19 18 23 23 H 1.08997 * 109.46841 * 59.99927 * 1 2 3 24 24 H 1.08994 * 109.46989 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47099 * 299.99697 * 1 2 3 26 26 H 0.96998 * 120.00564 * 180.02562 * 7 6 4 27 27 H 0.96992 * 119.99927 * 94.99837 * 12 2 1 28 28 H 1.07998 * 126.82894 * 0.02562 * 16 15 13 29 29 H 1.08997 * 115.55322 * 154.44298 * 20 19 18 30 30 H 1.09005 * 117.49577 * 359.97438 * 21 20 19 31 31 H 1.08991 * 117.50332 * 145.02017 * 21 20 19 32 32 H 1.09002 * 117.49836 * 214.98049 * 22 20 19 33 33 H 1.09000 * 117.49786 * 359.96923 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5883 -1.1315 6 6 1.6993 -0.2391 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3214 -1.1200 -4.0080 9 1 1.8259 -2.5199 -4.0079 10 1 1.8260 -0.4202 -5.2205 11 1 3.8064 -1.1206 -4.0082 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8583 1.1617 2.4116 15 6 2.6390 -0.7131 3.5604 16 6 3.0128 -2.0277 3.6975 17 8 3.3833 -2.1820 4.9706 18 7 3.2911 -1.1680 5.6179 19 6 2.8505 -0.1697 4.9110 20 6 2.6032 1.2418 5.3773 21 6 3.0855 1.6172 6.7800 22 6 1.5894 1.4458 6.5050 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7082 1.1611 -3.4843 27 1 2.2491 -1.6317 1.1525 28 1 3.0080 -2.7857 2.9282 29 1 2.6574 2.0085 4.6045 30 1 3.5813 0.8430 7.3657 31 1 3.4567 2.6309 6.9301 32 1 0.9770 2.3470 6.4743 33 1 1.1011 0.5591 6.9093 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283146366.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:37 Heat of formation + Delta-G solvation = 43.266113 kcal Electronic energy + Delta-G solvation = -17858.176450 eV Core-core repulsion = 14888.083595 eV Total energy + Delta-G solvation = -2970.092855 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.80219 -38.83171 -37.41467 -34.86449 -33.17862 -32.48300 -31.65405 -28.90413 -25.33846 -24.76979 -24.07957 -22.43380 -21.21055 -20.32473 -19.45607 -18.27379 -17.58566 -16.81923 -15.85939 -15.38313 -15.30559 -14.79771 -14.23553 -14.03863 -13.54157 -12.98495 -12.43933 -12.08392 -11.82804 -11.64791 -11.59688 -11.29110 -11.12631 -11.00821 -10.81577 -10.44028 -10.38705 -10.28421 -9.58819 -9.46421 -9.33146 -9.12040 -8.61056 -8.02885 -6.17311 -4.27351 1.26146 1.83145 3.08045 3.22547 3.28341 3.29021 3.71997 3.82580 3.88587 4.14868 4.31499 4.35155 4.90013 4.95080 5.04476 5.08040 5.15185 5.45388 5.56591 5.61471 5.75744 5.96654 6.05100 6.22761 6.76842 6.90119 7.07838 7.33810 7.47642 7.62344 7.84244 8.08275 8.26163 8.53783 8.70032 8.97469 9.40095 10.88638 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.036090 B = 0.005039 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.658859 B = 5555.842214 C = 6057.388339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.266 3.734 3 H 0.051 0.949 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.699 5.699 13 C 0.578 3.422 14 O -0.540 6.540 15 C -0.232 4.232 16 C -0.019 4.019 17 O 0.092 5.908 18 N -0.365 5.365 19 C 0.096 3.904 20 C -0.081 4.081 21 C -0.168 4.168 22 C -0.159 4.159 23 H 0.091 0.909 24 H 0.027 0.973 25 H 0.016 0.984 26 H 0.266 0.734 27 H 0.387 0.613 28 H 0.226 0.774 29 H 0.141 0.859 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.817 -4.158 12.816 13.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.164 3.836 3 H 0.069 0.931 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.347 5.347 13 C 0.362 3.638 14 O -0.419 6.419 15 C -0.239 4.239 16 C -0.101 4.101 17 O 0.032 5.968 18 N -0.072 5.072 19 C -0.066 4.066 20 C -0.100 4.100 21 C -0.206 4.206 22 C -0.197 4.197 23 H 0.110 0.890 24 H 0.046 0.954 25 H 0.035 0.965 26 H 0.076 0.924 27 H 0.219 0.781 28 H 0.243 0.757 29 H 0.158 0.842 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.884 -3.356 13.913 14.599 hybrid contribution 0.131 -0.797 -1.802 1.975 sum 3.016 -4.153 12.110 13.153 Atomic orbital electron populations 1.22087 0.98239 0.99242 1.01061 1.18811 0.91149 0.94067 0.79527 0.93092 1.21146 1.32758 1.13369 0.90234 0.92066 1.24878 0.94729 0.94924 0.99065 1.69883 1.35595 1.22361 1.24117 0.86489 0.79177 0.79577 0.81745 1.20129 1.21091 1.20144 1.46426 1.64714 1.13371 1.10140 1.16898 0.78741 0.86401 0.81755 1.90740 1.51278 1.15210 1.84699 1.22716 1.10508 0.94146 0.96548 1.26405 0.97699 0.98089 0.87901 1.84527 1.63561 1.30002 1.18668 1.73551 1.20238 0.93839 1.19535 1.23832 0.98158 0.95594 0.89018 1.20367 1.05982 0.90538 0.93110 1.23043 0.97247 1.03021 0.97249 1.23005 0.92352 1.03652 1.00669 0.89001 0.95387 0.96530 0.92422 0.78063 0.75735 0.84172 0.88273 0.87981 0.87741 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.26 37.16 0.34 -3.24 16 2 C 0.27 6.57 2.56 -69.08 -0.18 6.39 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 4 C -0.54 -13.75 8.73 -34.44 -0.30 -14.05 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.31 11.32 55.43 0.63 -23.69 16 8 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 9 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 10 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 12 N -0.70 -14.03 5.07 -56.02 -0.28 -14.31 16 13 C 0.58 11.58 7.78 -12.53 -0.10 11.48 16 14 O -0.54 -12.71 15.46 5.27 0.08 -12.63 16 15 C -0.23 -3.76 6.47 -102.89 -0.67 -4.43 16 16 C -0.02 -0.23 11.85 30.41 0.36 0.13 16 17 O 0.09 1.21 11.06 18.66 0.21 1.42 16 18 N -0.36 -5.45 11.71 34.78 0.41 -5.05 16 19 C 0.10 1.52 7.07 -79.77 -0.56 0.96 16 20 C -0.08 -1.18 5.90 -91.77 -0.54 -1.72 16 21 C -0.17 -1.95 10.17 -26.69 -0.27 -2.22 16 22 C -0.16 -1.92 10.24 -26.69 -0.27 -2.19 16 23 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 24 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.39 6.41 7.72 -40.82 -0.32 6.10 16 28 H 0.23 1.72 7.68 -52.49 -0.40 1.32 16 29 H 0.14 2.24 7.29 -51.93 -0.38 1.86 16 30 H 0.10 1.16 7.97 -51.93 -0.41 0.75 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 291.87 15.07 4.40 4.40 Total: -1.00 -30.50 291.87 -5.74 -36.24 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -3.87 Total: 5.74 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -2.28 Total: -7.21 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.75 Total: -43.04 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.29 Total: -11.21 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.50 -5.74 -36.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283146366.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.506 kcal (2) G-P(sol) polarization free energy of solvation -30.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds