Wall clock time and date at job start Mon Mar 30 2020 18:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47345 * 2 1 4 4 C 1.36975 * 119.99789 * 273.23330 * 3 2 1 5 5 H 1.08000 * 119.99598 * 181.01466 * 4 3 2 6 6 C 1.38979 * 119.99808 * 1.02101 * 4 3 2 7 7 N 1.31408 * 120.00062 * 26.97987 * 6 4 3 8 8 Si 1.86803 * 119.99673 * 206.97535 * 6 4 3 9 9 H 1.48503 * 109.47242 * 60.00088 * 8 6 4 10 10 H 1.48496 * 109.46884 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46927 * 300.00018 * 8 6 4 12 12 C 1.34777 * 120.00346 * 93.22912 * 3 2 1 13 13 O 1.21630 * 120.00197 * 186.44868 * 12 3 2 14 14 C 1.47348 * 119.99773 * 6.45857 * 12 3 2 15 15 C 1.41115 * 126.40245 * 336.66512 * 14 12 3 16 16 C 1.37842 * 106.82812 * 179.97438 * 15 14 12 17 17 C 1.41549 * 125.97643 * 180.02562 * 16 15 14 18 18 O 1.21412 * 120.00193 * 0.02562 * 17 16 15 19 19 N 1.37997 * 108.04309 * 359.75072 * 16 15 14 20 20 H 0.96997 * 125.37798 * 180.25826 * 19 16 15 21 21 C 1.34163 * 109.25612 * 0.42193 * 19 16 15 22 22 C 1.50697 * 125.66539 * 179.83056 * 21 19 16 23 23 H 1.09000 * 109.47046 * 300.00147 * 1 2 3 24 24 H 1.08992 * 109.47424 * 60.00514 * 1 2 3 25 25 H 1.08996 * 109.46987 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46857 * 239.99456 * 2 1 3 27 27 H 1.09002 * 109.47181 * 119.99926 * 2 1 3 28 28 H 0.97005 * 119.99913 * 179.97438 * 7 6 4 29 29 H 1.07999 * 126.58053 * 0.02562 * 15 14 12 30 30 H 1.08003 * 119.99582 * 180.02562 * 17 16 15 31 31 H 1.08992 * 109.47682 * 269.70108 * 22 21 19 32 32 H 1.09004 * 109.47142 * 149.69103 * 22 21 19 33 33 H 1.09002 * 109.46497 * 29.69818 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1836 2.0491 -1.1844 5 1 2.5592 3.0617 -1.1853 6 6 1.8678 1.4238 -2.3847 7 7 0.9612 0.4729 -2.4116 8 14 2.7321 1.9352 -3.9598 9 1 4.1939 1.7173 -3.8156 10 1 2.2193 1.1225 -5.0920 11 1 2.4695 3.3727 -4.2242 12 6 2.3050 1.9946 1.1653 13 8 2.5974 3.1752 1.1753 14 6 2.2645 1.2350 2.4272 15 6 1.5346 0.0518 2.6694 16 6 1.7867 -0.3125 3.9746 17 6 1.2568 -1.4445 4.6392 18 8 0.5066 -2.1972 4.0520 19 7 2.6508 0.6159 4.5183 20 1 2.9960 0.5986 5.4246 21 6 2.9354 1.5484 3.5966 22 6 3.8404 2.7363 3.7988 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 0.7405 0.0368 -3.2495 29 1 0.9010 -0.4688 1.9666 30 1 1.5199 -1.6385 5.6685 31 1 3.2548 3.5821 4.1588 32 1 4.3131 2.9982 2.8521 33 1 4.6080 2.4875 4.5316 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283158956.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:40 Heat of formation + Delta-G solvation = 7.376118 kcal Electronic energy + Delta-G solvation = -18599.207754 eV Core-core repulsion = 15627.558591 eV Total energy + Delta-G solvation = -2971.649162 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.27716 -38.50847 -37.95022 -35.07642 -32.27204 -31.38050 -30.73079 -29.33387 -27.31292 -25.23937 -23.24106 -22.00274 -21.51110 -19.99501 -18.28750 -17.55170 -16.67097 -15.57671 -15.13134 -14.92139 -14.57998 -14.21914 -13.97738 -13.74427 -13.63152 -13.31487 -12.66927 -12.29854 -12.15873 -11.95360 -11.71813 -11.29959 -11.02510 -10.97189 -10.67261 -10.34955 -10.08464 -9.84094 -9.72254 -8.77577 -8.60901 -8.29568 -7.85212 -7.68301 -6.29968 -3.68419 1.22867 2.47047 3.20477 3.21885 3.27957 3.32341 3.36003 4.15658 4.37689 4.49913 4.93377 5.09082 5.19631 5.25991 5.51675 5.70752 5.81610 5.88700 6.19563 6.24047 6.32382 6.44079 6.70578 6.78598 6.91808 6.95111 7.10734 7.37720 7.53257 7.54508 7.65955 7.94176 8.15793 8.59277 9.24301 9.51329 10.10444 10.65185 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.026251 B = 0.007512 C = 0.006069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.361605 B = 3726.436875 C = 4612.869007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.103 3.897 3 N -0.428 5.428 4 C -0.305 4.305 5 H 0.107 0.893 6 C 0.031 3.969 7 N -0.858 5.858 8 Si 0.918 3.082 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.501 3.499 13 O -0.600 6.600 14 C -0.197 4.197 15 C -0.071 4.071 16 C -0.144 4.144 17 C 0.404 3.596 18 O -0.470 6.470 19 N -0.527 5.527 20 H 0.415 0.585 21 C 0.116 3.884 22 C -0.086 4.086 23 H 0.023 0.977 24 H 0.104 0.896 25 H 0.037 0.963 26 H 0.092 0.908 27 H 0.057 0.943 28 H 0.267 0.733 29 H 0.175 0.825 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.539 -2.824 11.962 12.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.020 4.020 3 N -0.144 5.144 4 C -0.433 4.433 5 H 0.124 0.876 6 C -0.172 4.172 7 N -0.497 5.497 8 Si 0.745 3.255 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.290 3.710 13 O -0.488 6.488 14 C -0.206 4.206 15 C -0.097 4.097 16 C -0.251 4.251 17 C 0.267 3.733 18 O -0.345 6.345 19 N -0.123 5.123 20 H 0.252 0.748 21 C -0.008 4.008 22 C -0.143 4.143 23 H 0.042 0.958 24 H 0.123 0.877 25 H 0.056 0.944 26 H 0.110 0.890 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.192 0.808 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.118 0.882 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.188 -2.875 11.609 12.377 hybrid contribution 0.470 0.088 -0.291 0.560 sum 3.658 -2.786 11.318 12.216 Atomic orbital electron populations 1.22275 0.96334 0.99984 1.02564 1.21996 0.94906 0.83754 1.01383 1.43652 1.54328 1.11620 1.04797 1.19709 1.41172 1.00504 0.81881 0.87563 1.25223 0.95721 0.96925 0.99358 1.70191 1.25957 1.26138 1.27392 0.86126 0.80137 0.78702 0.80570 1.20035 1.21059 1.19874 1.16899 0.85599 0.86404 0.82056 1.90562 1.56332 1.15403 1.86469 1.19953 1.05633 0.99387 0.95582 1.22759 0.98332 0.94966 0.93636 1.20328 1.07887 0.99875 0.97005 1.21392 0.78328 0.81559 0.92045 1.90603 1.29481 1.44911 1.69536 1.41541 1.37218 1.20533 1.13029 0.74786 1.20887 0.99162 0.92243 0.88493 1.20482 0.96585 0.92999 1.04280 0.95803 0.87723 0.94391 0.89032 0.92557 0.92209 0.80828 0.89797 0.90173 0.88248 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.44 37.16 0.31 -3.15 16 2 C 0.10 2.41 4.87 -4.04 -0.02 2.39 16 3 N -0.43 -11.20 2.62 -116.05 -0.30 -11.51 16 4 C -0.31 -8.49 9.44 -14.98 -0.14 -8.63 16 5 H 0.11 3.10 7.31 -52.49 -0.38 2.71 16 6 C 0.03 0.81 4.97 -17.46 -0.09 0.72 16 7 N -0.86 -22.01 8.03 55.50 0.45 -21.56 16 8 Si 0.92 20.44 29.63 -169.99 -5.04 15.40 16 9 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 12 C 0.50 12.68 7.48 -12.55 -0.09 12.58 16 13 O -0.60 -16.53 15.02 5.25 0.08 -16.46 16 14 C -0.20 -4.06 5.81 -105.04 -0.61 -4.67 16 15 C -0.07 -1.34 7.82 -38.64 -0.30 -1.64 16 16 C -0.14 -2.17 6.89 -83.97 -0.58 -2.75 16 17 C 0.40 5.30 11.53 31.99 0.37 5.67 16 18 O -0.47 -8.07 17.61 5.44 0.10 -7.97 16 19 N -0.53 -6.59 6.02 -6.59 -0.04 -6.63 16 20 H 0.41 3.21 8.96 -40.82 -0.37 2.84 16 21 C 0.12 1.87 7.19 -81.51 -0.59 1.29 16 22 C -0.09 -1.18 9.74 36.00 0.35 -0.83 16 23 H 0.02 0.52 7.19 -51.93 -0.37 0.14 16 24 H 0.10 2.64 5.90 -51.93 -0.31 2.34 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.09 2.28 6.06 -51.93 -0.31 1.97 16 27 H 0.06 1.22 4.11 -51.93 -0.21 1.00 16 28 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 29 H 0.17 3.46 3.91 -52.49 -0.21 3.26 16 30 H 0.09 0.69 8.06 -52.48 -0.42 0.27 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.10 1.64 7.11 -51.93 -0.37 1.27 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 275.76 15.07 4.16 4.16 Total: -1.00 -32.39 275.76 -5.35 -37.74 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -3.36 Total: 5.86 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -1.39 Total: 0.97 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.10 Total: -39.70 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: 0.17 Total: -24.43 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.04 Total: 15.40 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.39 -5.35 -37.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283158956.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.112 kcal (2) G-P(sol) polarization free energy of solvation -32.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds