Wall clock time and date at job start Mon Mar 30 2020 18:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47345 * 2 1 4 4 C 1.36975 * 119.99789 * 273.23330 * 3 2 1 5 5 H 1.08000 * 119.99598 * 181.01466 * 4 3 2 6 6 C 1.38979 * 119.99808 * 1.02101 * 4 3 2 7 7 N 1.31408 * 120.00062 * 26.97987 * 6 4 3 8 8 Si 1.86803 * 119.99673 * 206.97535 * 6 4 3 9 9 H 1.48503 * 109.47242 * 60.00088 * 8 6 4 10 10 H 1.48496 * 109.46884 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46927 * 300.00018 * 8 6 4 12 12 C 1.34777 * 120.00346 * 93.22912 * 3 2 1 13 13 O 1.21630 * 120.00197 * 186.44868 * 12 3 2 14 14 C 1.47348 * 119.99773 * 6.45857 * 12 3 2 15 15 C 1.41115 * 126.40245 * 336.66512 * 14 12 3 16 16 C 1.37842 * 106.82812 * 179.97438 * 15 14 12 17 17 C 1.41549 * 125.97643 * 180.02562 * 16 15 14 18 18 O 1.21412 * 120.00193 * 0.02562 * 17 16 15 19 19 N 1.37997 * 108.04309 * 359.75072 * 16 15 14 20 20 H 0.96997 * 125.37798 * 180.25826 * 19 16 15 21 21 C 1.34163 * 109.25612 * 0.42193 * 19 16 15 22 22 C 1.50697 * 125.66539 * 179.83056 * 21 19 16 23 23 H 1.09000 * 109.47046 * 300.00147 * 1 2 3 24 24 H 1.08992 * 109.47424 * 60.00514 * 1 2 3 25 25 H 1.08996 * 109.46987 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46857 * 239.99456 * 2 1 3 27 27 H 1.09002 * 109.47181 * 119.99926 * 2 1 3 28 28 H 0.97005 * 119.99913 * 179.97438 * 7 6 4 29 29 H 1.07999 * 126.58053 * 0.02562 * 15 14 12 30 30 H 1.08003 * 119.99582 * 180.02562 * 17 16 15 31 31 H 1.08992 * 109.47682 * 269.70108 * 22 21 19 32 32 H 1.09004 * 109.47142 * 149.69103 * 22 21 19 33 33 H 1.09002 * 109.46497 * 29.69818 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1836 2.0491 -1.1844 5 1 2.5592 3.0617 -1.1853 6 6 1.8678 1.4238 -2.3847 7 7 0.9612 0.4729 -2.4116 8 14 2.7321 1.9352 -3.9598 9 1 4.1939 1.7173 -3.8156 10 1 2.2193 1.1225 -5.0920 11 1 2.4695 3.3727 -4.2242 12 6 2.3050 1.9946 1.1653 13 8 2.5974 3.1752 1.1753 14 6 2.2645 1.2350 2.4272 15 6 1.5346 0.0518 2.6694 16 6 1.7867 -0.3125 3.9746 17 6 1.2568 -1.4445 4.6392 18 8 0.5066 -2.1972 4.0520 19 7 2.6508 0.6159 4.5183 20 1 2.9960 0.5986 5.4246 21 6 2.9354 1.5484 3.5966 22 6 3.8404 2.7363 3.7988 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 0.7405 0.0368 -3.2495 29 1 0.9010 -0.4688 1.9666 30 1 1.5199 -1.6385 5.6685 31 1 3.2548 3.5821 4.1588 32 1 4.3131 2.9982 2.8521 33 1 4.6080 2.4875 4.5316 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283158956.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:39 Heat of formation + Delta-G solvation = -15.409219 kcal Electronic energy + Delta-G solvation = -18600.195800 eV Core-core repulsion = 15627.558591 eV Total energy + Delta-G solvation = -2972.637208 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.58797 -40.09159 -39.41996 -37.04572 -34.10028 -32.62911 -32.35020 -31.16922 -28.49619 -27.13305 -24.73394 -23.75617 -23.07791 -21.26500 -19.86386 -18.95639 -18.54376 -17.26576 -16.47802 -16.33466 -16.10051 -15.98351 -15.45972 -15.36164 -15.24647 -14.69116 -14.32245 -13.83210 -13.69461 -13.36119 -13.27135 -12.94670 -12.84110 -12.62628 -12.50151 -12.13129 -12.05262 -11.65755 -10.92735 -10.76366 -10.33361 -9.94287 -9.71212 -9.11942 -8.28646 -5.76884 0.06823 0.95739 1.42476 1.46042 1.54198 2.07100 2.14460 2.30814 2.54972 3.12241 3.22580 3.57136 3.92625 4.12576 4.16120 4.41122 4.49714 4.54936 4.76062 4.83267 4.85810 4.91768 5.00265 5.13487 5.24453 5.42277 5.49157 5.55527 5.73409 5.98189 6.12807 6.53362 6.59791 6.63501 7.22579 7.55287 8.14569 8.64901 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.026251 B = 0.007512 C = 0.006069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.361605 B = 3726.436875 C = 4612.869007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.111 3.889 3 N -0.445 5.445 4 C -0.352 4.352 5 H 0.078 0.922 6 C 0.003 3.997 7 N -0.865 5.865 8 Si 0.983 3.017 9 H -0.274 1.274 10 H -0.269 1.269 11 H -0.275 1.275 12 C 0.491 3.509 13 O -0.637 6.637 14 C -0.245 4.245 15 C -0.106 4.106 16 C -0.123 4.123 17 C 0.416 3.584 18 O -0.510 6.510 19 N -0.487 5.487 20 H 0.445 0.555 21 C 0.130 3.870 22 C -0.083 4.083 23 H 0.021 0.979 24 H 0.076 0.924 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.273 0.727 29 H 0.156 0.844 30 H 0.159 0.841 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.318 -4.159 14.544 15.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.012 4.012 3 N -0.161 5.161 4 C -0.479 4.479 5 H 0.096 0.904 6 C -0.200 4.200 7 N -0.503 5.503 8 Si 0.807 3.193 9 H -0.199 1.199 10 H -0.194 1.194 11 H -0.201 1.201 12 C 0.283 3.717 13 O -0.528 6.528 14 C -0.254 4.254 15 C -0.132 4.132 16 C -0.232 4.232 17 C 0.280 3.720 18 O -0.386 6.386 19 N -0.086 5.086 20 H 0.289 0.711 21 C 0.004 3.996 22 C -0.140 4.140 23 H 0.040 0.960 24 H 0.095 0.905 25 H 0.077 0.923 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.173 0.827 30 H 0.175 0.825 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.961 -4.245 14.236 15.374 hybrid contribution 0.204 0.484 -0.960 1.094 sum 4.165 -3.761 13.276 14.413 Atomic orbital electron populations 1.22077 0.95845 1.00770 1.00940 1.21974 0.95198 0.82669 1.01328 1.43848 1.55070 1.12422 1.04800 1.19611 1.44131 1.00418 0.83745 0.90434 1.25931 0.95535 0.96948 1.01575 1.70276 1.25499 1.26153 1.28360 0.85171 0.78813 0.78302 0.77060 1.19946 1.19401 1.20065 1.17702 0.84088 0.86450 0.83455 1.90500 1.57695 1.17150 1.87428 1.19685 1.09421 1.00990 0.95256 1.22589 0.99553 0.95188 0.95858 1.20633 1.06734 1.00283 0.95563 1.22295 0.76312 0.79344 0.94042 1.90616 1.31138 1.45916 1.70947 1.41355 1.35237 1.18307 1.13680 0.71143 1.20991 0.98104 0.92911 0.87608 1.20510 0.97320 0.92264 1.03934 0.96018 0.90499 0.92282 0.90940 0.90543 0.91646 0.82655 0.82490 0.89501 0.91730 0.87186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.45 8.44 71.98 0.61 -5.85 16 2 C 0.11 5.42 4.87 86.38 0.42 5.84 16 3 N -0.45 -24.63 2.62 -639.33 -1.68 -26.31 16 4 C -0.35 -20.74 9.44 84.07 0.79 -19.95 16 5 H 0.08 4.88 7.31 -2.91 -0.02 4.86 16 6 C 0.00 0.17 4.97 84.93 0.42 0.59 16 7 N -0.87 -45.53 8.03 21.67 0.17 -45.36 16 8 Si 0.98 42.97 29.63 68.60 2.03 45.00 16 9 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 10 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 11 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 12 C 0.49 26.20 7.48 86.64 0.65 26.85 16 13 O -0.64 -37.28 15.02 -4.13 -0.06 -37.34 16 14 C -0.24 -10.21 5.81 -20.13 -0.12 -10.33 16 15 C -0.11 -3.97 7.82 22.88 0.18 -3.79 16 16 C -0.12 -3.30 6.89 38.90 0.27 -3.03 16 17 C 0.42 8.93 11.53 68.64 0.79 9.72 16 18 O -0.51 -16.05 17.61 -3.44 -0.06 -16.11 16 19 N -0.49 -10.03 6.02 -174.78 -1.05 -11.08 16 20 H 0.45 4.01 8.96 -92.71 -0.83 3.18 16 21 C 0.13 3.96 7.19 42.24 0.30 4.26 16 22 C -0.08 -2.11 9.74 71.24 0.69 -1.41 16 23 H 0.02 0.98 7.19 -2.39 -0.02 0.96 16 24 H 0.08 4.03 5.90 -2.39 -0.01 4.02 16 25 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.07 3.76 6.06 -2.39 -0.01 3.74 16 27 H 0.08 3.42 4.11 -2.39 -0.01 3.41 16 28 H 0.27 13.43 8.31 -92.70 -0.77 12.66 16 29 H 0.16 6.29 3.91 -2.91 -0.01 6.27 16 30 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 31 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.06 2.15 7.11 -2.39 -0.02 2.13 16 33 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -77.16 275.76 4.70 -72.46 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.33 Total: 15.83 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 5.01 Total: 2.91 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -2.56 Total: -82.74 kcal Atomic # 8 Polarization: -53.33 SS G_CDS: -0.12 Total: -53.45 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -77.16 4.70 -72.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283158956.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.051 kcal (2) G-P(sol) polarization free energy of solvation -77.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds