Wall clock time and date at job start Mon Mar 30 2020 18:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00172 * 2 1 4 4 H 1.48493 * 109.47277 * 269.99398 * 3 2 1 5 5 H 1.48501 * 109.47143 * 29.99842 * 3 2 1 6 6 H 1.48507 * 109.46809 * 149.99675 * 3 2 1 7 7 C 1.37878 * 119.99371 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99821 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00425 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47112 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47110 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99957 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99962 * 179.97438 * 11 10 9 14 14 C 1.38995 * 119.99537 * 179.97438 * 13 11 10 15 15 N 1.31135 * 126.46583 * 359.97438 * 14 13 11 16 16 N 1.28538 * 109.83773 * 180.02562 * 15 14 13 17 17 C 1.30370 * 110.01646 * 359.97438 * 16 15 14 18 18 N 1.36437 * 126.45934 * 180.31140 * 14 13 11 19 19 C 1.46505 * 127.11857 * 0.02562 * 18 14 13 20 20 C 1.52999 * 117.49095 * 188.92116 * 19 18 14 21 21 C 1.52995 * 117.49937 * 120.26321 * 19 18 14 22 22 H 0.97002 * 120.00051 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47247 * 59.99623 * 9 7 2 24 24 H 1.09004 * 109.46665 * 299.99078 * 9 7 2 25 25 H 1.09007 * 109.47303 * 59.99687 * 10 9 7 26 26 H 1.09001 * 109.47126 * 299.99866 * 10 9 7 27 27 H 0.96999 * 120.00061 * 0.02562 * 13 11 10 28 28 H 1.08002 * 126.33950 * 179.97438 * 17 16 15 29 29 H 1.08994 * 115.55095 * 334.58660 * 19 18 14 30 30 H 1.09002 * 117.50617 * 359.97438 * 20 19 18 31 31 H 1.09004 * 117.49662 * 145.02105 * 20 19 18 32 32 H 1.09001 * 117.50296 * 214.97571 * 21 19 18 33 33 H 1.09003 * 117.49834 * 359.96964 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7002 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6621 0.0005 11 6 1.4915 -4.9672 0.0012 12 8 0.2787 -4.9672 0.0011 13 7 2.1654 -6.1345 0.0008 14 6 1.4703 -7.3381 0.0019 15 7 0.1672 -7.4857 0.0038 16 7 -0.1302 -8.7362 0.0049 17 6 0.9583 -9.4537 0.0032 18 7 2.0151 -8.5890 0.0076 19 6 3.4391 -8.9331 0.0143 20 6 3.8115 -10.4029 -0.1905 21 6 3.9605 -9.7605 1.1909 22 1 -0.4850 0.8401 -0.0004 23 1 0.6245 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8904 25 1 2.8718 -3.6044 0.8905 26 1 2.8717 -3.6044 -0.8895 27 1 3.1354 -6.1345 0.0004 28 1 1.0138 -10.5323 0.0039 29 1 4.1064 -8.1814 -0.4072 30 1 2.9971 -11.1139 -0.3298 31 1 4.7242 -10.6180 -0.7464 32 1 4.9709 -9.5534 1.5433 33 1 3.2440 -10.0484 1.9603 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291543224.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:45 Heat of formation + Delta-G solvation = 79.503335 kcal Electronic energy + Delta-G solvation = -17478.606810 eV Core-core repulsion = 14542.378070 eV Total energy + Delta-G solvation = -2936.228740 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.00013 -39.32877 -38.04756 -34.86744 -33.52439 -32.70700 -31.17105 -29.47083 -25.97064 -24.47144 -23.33623 -22.95337 -21.54553 -20.85003 -19.60759 -18.41889 -16.97332 -16.45217 -16.38008 -15.82746 -15.60119 -14.80291 -14.57775 -14.43143 -13.79320 -13.42202 -12.63180 -12.25671 -12.23067 -12.11931 -11.45733 -11.33317 -11.22546 -10.99707 -10.84865 -10.63246 -10.23557 -10.03034 -9.90903 -9.72280 -9.33853 -9.12916 -8.38043 -8.32160 -5.97816 -4.03262 1.65680 1.85479 2.84012 3.03055 3.08664 3.32408 3.36654 3.38714 3.40841 3.88078 4.09804 4.18786 4.39456 4.45247 4.86781 4.98793 5.00857 5.21795 5.30127 5.37132 5.38651 5.61579 5.73749 6.07277 6.07475 6.31686 6.73535 6.91267 7.38977 7.70883 7.80241 8.03240 8.31430 8.50548 8.90327 9.04577 9.60529 11.13008 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.042925 B = 0.004056 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.148287 B = 6901.885269 C = 7465.868020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.035 3.965 10 C -0.119 4.119 11 C 0.505 3.495 12 O -0.462 6.462 13 N -0.646 5.646 14 C 0.419 3.581 15 N -0.276 5.276 16 N -0.280 5.280 17 C 0.136 3.864 18 N -0.473 5.473 19 C 0.052 3.948 20 C -0.166 4.166 21 C -0.175 4.175 22 H 0.262 0.738 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.412 0.588 28 H 0.217 0.783 29 H 0.143 0.857 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.169 -21.349 0.391 25.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.568 4.568 8 H 0.075 0.925 9 C -0.003 4.003 10 C -0.160 4.160 11 C 0.292 3.708 12 O -0.326 6.326 13 N -0.301 5.301 14 C 0.064 3.936 15 N -0.122 5.122 16 N -0.118 5.118 17 C -0.152 4.152 18 N -0.172 5.172 19 C -0.053 4.053 20 C -0.204 4.204 21 C -0.213 4.213 22 H 0.072 0.928 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.248 0.752 28 H 0.233 0.767 29 H 0.160 0.840 30 H 0.125 0.875 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.563 -20.723 0.396 23.264 hybrid contribution 2.518 0.384 -0.023 2.547 sum 13.081 -20.339 0.372 24.185 Atomic orbital electron populations 1.69998 1.06060 1.26718 1.49727 1.25025 0.94828 0.99264 0.95211 0.86574 0.79722 0.83470 0.78066 1.20660 1.21193 1.19893 1.21154 0.92894 0.90814 1.51948 0.92516 1.18966 0.93152 0.89107 0.99079 1.21920 1.00863 0.90167 1.03017 1.22069 0.89311 0.84094 0.75299 1.90841 1.13676 1.85717 1.42411 1.43339 1.10033 1.01325 1.75442 1.21617 0.89395 0.80692 1.01897 1.75121 1.05871 1.08737 1.22483 1.74223 1.23477 0.97630 1.16452 1.26110 0.82291 0.98498 1.08256 1.45878 1.07003 1.05577 1.58746 1.21964 0.79863 0.97140 1.06307 1.23421 1.04335 0.92883 0.99769 1.23547 1.03666 1.01994 0.92099 0.92835 0.95478 0.95463 0.89620 0.89623 0.75175 0.76697 0.83973 0.87510 0.86680 0.86793 0.87646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.71 9.11 -34.44 -0.31 -15.03 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.03 0.91 4.26 -27.88 -0.12 0.79 16 10 C -0.12 -2.29 5.64 -27.88 -0.16 -2.45 16 11 C 0.51 9.82 7.79 -10.98 -0.09 9.74 16 12 O -0.46 -11.47 14.71 5.56 0.08 -11.39 16 13 N -0.65 -9.46 5.40 -12.41 -0.07 -9.52 16 14 C 0.42 6.74 8.54 -318.39 -2.72 4.02 16 15 N -0.28 -5.61 10.45 30.38 0.32 -5.29 16 16 N -0.28 -4.87 12.18 29.87 0.36 -4.51 16 17 C 0.14 1.61 12.10 -89.09 -1.08 0.53 16 18 N -0.47 -5.36 3.13 -111.54 -0.35 -5.71 16 19 C 0.05 0.34 6.72 -67.93 -0.46 -0.12 16 20 C -0.17 -0.64 10.01 -26.69 -0.27 -0.90 16 21 C -0.17 -0.80 10.42 -26.70 -0.28 -1.07 16 22 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 23 H 0.03 0.78 8.10 -51.93 -0.42 0.36 16 24 H 0.03 0.79 8.10 -51.93 -0.42 0.37 16 25 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 26 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 27 H 0.41 4.00 8.28 -40.82 -0.34 3.66 16 28 H 0.22 1.45 7.18 -52.49 -0.38 1.07 16 29 H 0.14 0.66 7.81 -51.93 -0.41 0.26 16 30 H 0.11 0.36 6.96 -51.93 -0.36 0.00 16 31 H 0.11 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 293.27 15.07 4.42 4.42 Total: -1.00 -38.58 293.27 -9.07 -47.64 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -3.98 Total: -2.61 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -5.57 Total: -2.89 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 1.00 Total: -51.56 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -38.58 -9.07 -47.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291543224.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.148 kcal (2) G-P(sol) polarization free energy of solvation -38.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds