Wall clock time and date at job start Mon Mar 30 2020 18:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00172 * 2 1 4 4 H 1.48493 * 109.47277 * 269.99398 * 3 2 1 5 5 H 1.48501 * 109.47143 * 29.99842 * 3 2 1 6 6 H 1.48507 * 109.46809 * 149.99675 * 3 2 1 7 7 C 1.37878 * 119.99371 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99821 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00425 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47112 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47110 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99957 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99962 * 179.97438 * 11 10 9 14 14 C 1.38995 * 119.99537 * 179.97438 * 13 11 10 15 15 N 1.31135 * 126.46583 * 359.97438 * 14 13 11 16 16 N 1.28538 * 109.83773 * 180.02562 * 15 14 13 17 17 C 1.30370 * 110.01646 * 359.97438 * 16 15 14 18 18 N 1.36437 * 126.45934 * 180.31140 * 14 13 11 19 19 C 1.46505 * 127.11857 * 0.02562 * 18 14 13 20 20 C 1.52999 * 117.49095 * 188.92116 * 19 18 14 21 21 C 1.52995 * 117.49937 * 120.26321 * 19 18 14 22 22 H 0.97002 * 120.00051 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47247 * 59.99623 * 9 7 2 24 24 H 1.09004 * 109.46665 * 299.99078 * 9 7 2 25 25 H 1.09007 * 109.47303 * 59.99687 * 10 9 7 26 26 H 1.09001 * 109.47126 * 299.99866 * 10 9 7 27 27 H 0.96999 * 120.00061 * 0.02562 * 13 11 10 28 28 H 1.08002 * 126.33950 * 179.97438 * 17 16 15 29 29 H 1.08994 * 115.55095 * 334.58660 * 19 18 14 30 30 H 1.09002 * 117.50617 * 359.97438 * 20 19 18 31 31 H 1.09004 * 117.49662 * 145.02105 * 20 19 18 32 32 H 1.09001 * 117.50296 * 214.97571 * 21 19 18 33 33 H 1.09003 * 117.49834 * 359.96964 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7002 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6621 0.0005 11 6 1.4915 -4.9672 0.0012 12 8 0.2787 -4.9672 0.0011 13 7 2.1654 -6.1345 0.0008 14 6 1.4703 -7.3381 0.0019 15 7 0.1672 -7.4857 0.0038 16 7 -0.1302 -8.7362 0.0049 17 6 0.9583 -9.4537 0.0032 18 7 2.0151 -8.5890 0.0076 19 6 3.4391 -8.9331 0.0143 20 6 3.8115 -10.4029 -0.1905 21 6 3.9605 -9.7605 1.1909 22 1 -0.4850 0.8401 -0.0004 23 1 0.6245 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8904 25 1 2.8718 -3.6044 0.8905 26 1 2.8717 -3.6044 -0.8895 27 1 3.1354 -6.1345 0.0004 28 1 1.0138 -10.5323 0.0039 29 1 4.1064 -8.1814 -0.4072 30 1 2.9971 -11.1139 -0.3298 31 1 4.7242 -10.6180 -0.7464 32 1 4.9709 -9.5534 1.5433 33 1 3.2440 -10.0484 1.9603 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291543224.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:45 Heat of formation + Delta-G solvation = 54.203377 kcal Electronic energy + Delta-G solvation = -17479.703899 eV Core-core repulsion = 14542.378070 eV Total energy + Delta-G solvation = -2937.325829 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.08708 -40.85739 -38.58546 -36.26549 -35.57120 -33.63345 -33.07998 -30.77094 -27.88167 -25.29244 -24.77571 -23.49997 -22.83795 -21.94614 -21.05443 -19.33115 -18.82090 -17.54277 -17.53177 -17.36019 -16.46373 -16.42288 -16.16466 -15.40036 -15.16867 -14.36409 -14.24033 -14.19841 -13.28342 -12.90089 -12.82000 -12.53794 -12.47177 -12.44138 -12.28170 -11.92879 -11.80997 -11.65097 -11.33951 -11.25938 -10.94297 -10.63754 -10.55355 -9.60610 -8.16149 -6.30669 0.59224 0.85142 1.44526 1.47328 1.54950 1.58090 2.02348 2.03044 2.44883 2.68712 3.17542 3.39260 3.50113 3.74234 3.80107 3.85024 4.12377 4.33698 4.49437 4.52695 4.53635 4.72467 4.88137 4.99947 5.03949 5.13241 5.23232 5.51780 5.61629 5.85988 5.95217 6.16436 6.17750 6.87558 7.07088 7.39973 7.77140 8.96736 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.042925 B = 0.004056 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.148287 B = 6901.885269 C = 7465.868020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.976 3.024 4 H -0.272 1.272 5 H -0.290 1.290 6 H -0.252 1.252 7 C -0.540 4.540 8 H 0.083 0.917 9 C 0.037 3.963 10 C -0.104 4.104 11 C 0.511 3.489 12 O -0.528 6.528 13 N -0.620 5.620 14 C 0.401 3.599 15 N -0.345 5.345 16 N -0.338 5.338 17 C 0.168 3.832 18 N -0.456 5.456 19 C 0.017 3.983 20 C -0.145 4.145 21 C -0.167 4.167 22 H 0.262 0.738 23 H -0.017 1.017 24 H -0.017 1.017 25 H 0.119 0.881 26 H 0.120 0.880 27 H 0.437 0.563 28 H 0.268 0.732 29 H 0.162 0.838 30 H 0.114 0.886 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.506 -22.882 0.334 28.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.198 1.198 5 H -0.216 1.216 6 H -0.175 1.175 7 C -0.578 4.578 8 H 0.101 0.899 9 C -0.001 4.001 10 C -0.143 4.143 11 C 0.299 3.701 12 O -0.399 6.399 13 N -0.277 5.277 14 C 0.043 3.957 15 N -0.190 5.190 16 N -0.175 5.175 17 C -0.121 4.121 18 N -0.153 5.153 19 C -0.086 4.086 20 C -0.183 4.183 21 C -0.205 4.205 22 H 0.071 0.929 23 H 0.001 0.999 24 H 0.001 0.999 25 H 0.137 0.863 26 H 0.138 0.862 27 H 0.279 0.721 28 H 0.284 0.716 29 H 0.179 0.821 30 H 0.132 0.868 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 15.010 -22.321 0.340 26.901 hybrid contribution 1.228 0.653 0.005 1.391 sum 16.238 -21.668 0.345 27.079 Atomic orbital electron populations 1.70198 1.08473 1.27799 1.51479 1.26171 0.95666 1.04106 0.94701 0.85295 0.78713 0.77602 0.78457 1.19788 1.21574 1.17512 1.21693 0.94204 0.91174 1.50705 0.89895 1.18758 0.93836 0.92527 0.94955 1.21667 0.99165 0.87293 1.06216 1.21985 0.88380 0.85455 0.74252 1.90831 1.16486 1.86797 1.45756 1.42671 1.10975 0.99986 1.74055 1.21470 0.89077 0.82257 1.02849 1.74946 1.08932 1.10692 1.24468 1.74095 1.26269 0.97302 1.19876 1.27085 0.81163 1.00153 1.03677 1.46052 1.09046 1.03437 1.56810 1.22584 0.77100 0.99702 1.09199 1.23619 1.05248 0.90482 0.98915 1.23627 1.04172 1.00786 0.91926 0.92940 0.99886 0.99884 0.86252 0.86196 0.72126 0.71646 0.82102 0.86775 0.84391 0.84852 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.07 13.29 21.45 0.28 -59.78 16 2 C -0.01 -0.53 5.46 84.65 0.46 -0.06 16 3 Si 0.98 43.81 29.54 68.60 2.03 45.83 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 6 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 7 C -0.54 -29.98 9.11 25.60 0.23 -29.74 16 8 H 0.08 4.08 7.74 -2.91 -0.02 4.05 16 9 C 0.04 2.03 4.26 29.85 0.13 2.16 16 10 C -0.10 -3.90 5.64 29.85 0.17 -3.73 16 11 C 0.51 20.28 7.79 87.66 0.68 20.96 16 12 O -0.53 -28.07 14.71 -3.03 -0.04 -28.12 16 13 N -0.62 -17.63 5.40 -311.56 -1.68 -19.31 16 14 C 0.40 12.85 8.54 259.94 2.22 15.07 16 15 N -0.34 -14.62 10.45 -57.79 -0.60 -15.22 16 16 N -0.34 -12.03 12.18 -59.41 -0.72 -12.75 16 17 C 0.17 3.69 12.10 179.81 2.18 5.86 16 18 N -0.46 -9.43 3.13 -506.80 -1.59 -11.02 16 19 C 0.02 0.15 6.72 44.99 0.30 0.46 16 20 C -0.15 -0.41 10.01 30.62 0.31 -0.11 16 21 C -0.17 -0.84 10.42 30.62 0.32 -0.52 16 22 H 0.26 15.74 8.31 -92.71 -0.77 14.96 16 23 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 24 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 25 H 0.12 3.71 8.14 -2.38 -0.02 3.69 16 26 H 0.12 3.71 8.14 -2.39 -0.02 3.69 16 27 H 0.44 7.32 8.28 -92.71 -0.77 6.55 16 28 H 0.27 2.54 7.18 -2.91 -0.02 2.52 16 29 H 0.16 0.83 7.81 -2.39 -0.02 0.81 16 30 H 0.11 0.20 6.96 -2.39 -0.02 0.18 16 31 H 0.14 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -93.15 293.27 5.03 -88.12 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: 0.37 Total: 1.91 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 7.00 Total: 10.34 kcal Atomic # 7 Polarization: -113.77 SS G_CDS: -4.31 Total: -118.08 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.04 Total: -28.12 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -93.15 5.03 -88.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291543224.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.324 kcal (2) G-P(sol) polarization free energy of solvation -93.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds