Wall clock time and date at job start Mon Mar 30 2020 18:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35681 * 116.99739 * 2 1 4 4 C 1.38662 * 119.64596 * 180.02562 * 3 2 1 5 5 C 1.39135 * 119.02531 * 180.27521 * 4 3 2 6 6 N 1.39564 * 120.82920 * 179.72233 * 5 4 3 7 7 C 1.34769 * 120.00081 * 212.44713 * 6 5 4 8 8 O 1.21284 * 119.99925 * 5.25870 * 7 6 5 9 9 C 1.50701 * 120.00176 * 185.26092 * 7 6 5 10 10 C 1.52999 * 109.47073 * 179.97438 * 9 7 6 11 11 C 1.50706 * 109.46743 * 180.02562 * 10 9 7 12 12 H 1.07994 * 120.00265 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99797 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00089 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99973 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47002 * 59.99948 * 15 13 11 17 17 H 1.48494 * 109.47065 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46978 * 299.99913 * 15 13 11 19 19 C 1.39565 * 118.33963 * 359.46413 * 5 4 3 20 20 C 1.37804 * 119.20323 * 0.56339 * 19 5 4 21 21 N 1.32057 * 120.90730 * 359.69453 * 20 19 5 22 22 H 1.08994 * 109.47112 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.46597 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47274 * 299.99480 * 1 2 3 25 25 H 1.08001 * 120.49225 * 0.02562 * 4 3 2 26 26 H 0.96996 * 120.00003 * 32.44354 * 6 5 4 27 27 H 1.08994 * 109.46911 * 299.99767 * 9 7 6 28 28 H 1.09001 * 109.47059 * 59.99658 * 9 7 6 29 29 H 1.08994 * 109.47402 * 299.99882 * 10 9 7 30 30 H 1.09001 * 109.47118 * 60.00110 * 10 9 7 31 31 H 0.97000 * 120.00429 * 180.02562 * 14 13 11 32 32 H 1.08004 * 120.39617 * 180.25946 * 19 5 4 33 33 H 1.08001 * 119.54830 * 179.72696 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4301 1.2730 -0.0005 5 6 4.0482 2.5195 0.0053 6 7 5.4396 2.6278 0.0108 7 6 6.0327 3.6603 0.6421 8 8 5.3649 4.4420 1.2855 9 6 7.5256 3.8435 0.5487 10 6 7.9386 5.0807 1.3485 11 6 9.4315 5.2642 1.2545 12 1 10.0262 4.5679 0.6820 13 6 10.0382 6.3206 1.9003 14 7 9.3141 7.1683 2.5979 15 14 11.8886 6.5485 1.7833 16 1 12.2763 6.7271 0.3610 17 1 12.2895 7.7492 2.5596 18 1 12.5707 5.3508 2.3357 19 6 3.2421 3.6588 0.0000 20 6 1.8718 3.5129 0.0011 21 7 1.3173 2.3144 0.0010 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 4.0205 0.3687 -0.0014 26 1 5.9799 1.9600 -0.4397 27 1 8.0256 2.9643 0.9548 28 1 7.8110 3.9741 -0.4951 29 1 7.4386 5.9598 0.9421 30 1 7.6531 4.9505 2.3924 31 1 9.7408 7.9117 3.0520 32 1 3.6869 4.6430 0.0001 33 1 1.2427 4.3908 0.0015 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292253373.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:48 Heat of formation + Delta-G solvation = -44.797561 kcal Electronic energy + Delta-G solvation = -17213.882144 eV Core-core repulsion = 14239.970562 eV Total energy + Delta-G solvation = -2973.911583 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.89857 -39.54983 -37.75214 -35.05039 -33.58646 -31.54644 -30.90201 -30.21849 -27.38563 -25.94096 -23.58384 -23.24807 -21.45842 -19.98332 -18.64279 -17.38793 -16.74090 -16.19781 -16.09699 -15.76399 -15.62066 -15.03206 -14.49022 -14.11817 -14.01161 -13.49974 -13.44976 -12.57153 -12.36191 -12.23934 -11.89288 -11.36549 -11.28320 -10.97611 -10.80012 -10.67689 -10.07366 -9.97665 -9.72899 -9.31600 -9.16291 -8.71822 -8.47526 -8.38005 -6.02387 -4.07556 1.09518 1.26259 2.78180 2.94400 3.30880 3.33490 3.36382 3.38548 3.81212 4.30316 4.42126 4.85013 5.04688 5.10022 5.15628 5.15827 5.32797 5.34907 5.47287 5.51463 5.80009 6.02091 6.04930 6.13552 6.16662 6.68049 6.72793 7.15475 7.47774 7.65587 7.74276 7.84551 7.97828 8.26169 8.42584 8.99875 9.56580 11.08447 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.069243 B = 0.003541 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.276956 B = 7906.382300 C = 8175.877246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.311 6.311 3 C 0.333 3.667 4 C -0.230 4.230 5 C 0.237 3.763 6 N -0.681 5.681 7 C 0.511 3.489 8 O -0.505 6.505 9 C -0.128 4.128 10 C 0.036 3.964 11 C -0.531 4.531 12 H 0.056 0.944 13 C 0.059 3.941 14 N -0.889 5.889 15 Si 0.894 3.106 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.212 4.212 20 C 0.154 3.846 21 N -0.558 5.558 22 H 0.058 0.942 23 H 0.093 0.907 24 H 0.058 0.942 25 H 0.142 0.858 26 H 0.413 0.587 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.262 0.738 32 H 0.151 0.849 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.759 -12.779 -7.520 20.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.218 6.218 3 C 0.154 3.846 4 C -0.254 4.254 5 C 0.133 3.867 6 N -0.327 5.327 7 C 0.301 3.699 8 O -0.377 6.377 9 C -0.168 4.168 10 C -0.001 4.001 11 C -0.569 4.569 12 H 0.075 0.925 13 C -0.143 4.143 14 N -0.527 5.527 15 Si 0.722 3.278 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.235 4.235 20 C 0.000 4.000 21 N -0.284 5.284 22 H 0.076 0.924 23 H 0.111 0.889 24 H 0.077 0.923 25 H 0.160 0.840 26 H 0.250 0.750 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.168 0.832 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -14.926 -12.326 -6.917 20.557 hybrid contribution 1.934 -0.026 -0.215 1.946 sum -12.993 -12.353 -7.132 19.294 Atomic orbital electron populations 1.22819 0.77363 1.02641 1.02484 1.86208 1.22792 1.24693 1.88077 1.19393 0.88582 0.84713 0.91863 1.20618 0.92553 0.97786 1.14422 1.17765 0.84364 0.92690 0.91926 1.43974 1.03869 1.29418 1.55481 1.21973 0.92442 0.78771 0.76751 1.90705 1.66107 1.42536 1.38309 1.21946 0.86883 1.04198 1.03797 1.18929 0.95750 0.90153 0.95278 1.21144 0.92355 1.11395 1.31989 0.92546 1.25021 0.98237 0.95860 0.95183 1.69977 1.35527 1.14974 1.32246 0.86629 0.85466 0.77582 0.78129 1.20206 1.21244 1.20208 1.22088 0.94354 0.99983 1.07081 1.22235 0.92301 0.93461 0.92035 1.67317 1.40809 0.98720 1.21583 0.92361 0.88858 0.92327 0.84049 0.75024 0.89633 0.89491 0.95654 0.95671 0.92786 0.83178 0.82060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.38 101.05 1.05 1.42 16 2 O -0.31 -3.76 10.47 -18.74 -0.20 -3.95 16 3 C 0.33 4.49 7.48 -17.17 -0.13 4.36 16 4 C -0.23 -2.96 9.98 -39.09 -0.39 -3.35 16 5 C 0.24 3.37 6.32 -83.51 -0.53 2.84 16 6 N -0.68 -9.28 5.35 -9.72 -0.05 -9.33 16 7 C 0.51 9.14 7.60 -10.99 -0.08 9.06 16 8 O -0.50 -11.03 13.69 5.55 0.08 -10.95 16 9 C -0.13 -2.40 5.64 -27.88 -0.16 -2.56 16 10 C 0.04 0.94 4.26 -27.88 -0.12 0.82 16 11 C -0.53 -14.57 9.11 -34.44 -0.31 -14.88 16 12 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -26.83 13.29 55.43 0.74 -26.10 16 15 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 C -0.21 -3.11 8.73 -39.25 -0.34 -3.45 16 20 C 0.15 2.00 11.17 -17.61 -0.20 1.80 16 21 N -0.56 -7.58 9.21 -13.41 -0.12 -7.71 16 22 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 23 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 25 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 26 H 0.41 4.08 8.82 -40.82 -0.36 3.72 16 27 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 28 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 29 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 30 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.15 2.41 6.48 -52.48 -0.34 2.07 16 33 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 293.30 15.07 4.42 4.42 Total: -1.00 -33.50 293.30 -5.51 -39.00 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -4.04 Total: 0.79 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -1.31 Total: -2.38 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.56 Total: -43.13 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.12 Total: -14.90 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.50 -5.51 -39.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292253373.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.795 kcal (2) G-P(sol) polarization free energy of solvation -33.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds