Wall clock time and date at job start Mon Mar 30 2020 18:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47449 * 2 1 4 4 C 1.50700 * 109.47376 * 120.00686 * 2 1 3 5 5 H 1.07993 * 119.99929 * 119.99584 * 4 2 1 6 6 C 1.37880 * 119.99862 * 299.99859 * 4 2 1 7 7 N 1.31515 * 119.99790 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 119.99905 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47237 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47285 * 120.00017 * 8 6 4 11 11 H 1.48499 * 109.47089 * 239.99843 * 8 6 4 12 12 N 1.46501 * 109.46603 * 240.00528 * 2 1 3 13 13 C 1.46496 * 120.00203 * 299.99906 * 12 2 1 14 14 C 1.34783 * 119.99906 * 119.72736 * 12 2 1 15 15 O 1.21673 * 119.99712 * 6.31759 * 14 12 2 16 16 C 1.46846 * 120.00000 * 186.31982 * 14 12 2 17 17 C 1.36240 * 125.80200 * 188.10778 * 16 14 12 18 18 C 1.41570 * 106.98300 * 179.97438 * 17 16 14 19 19 C 1.46612 * 126.51621 * 179.97438 * 18 17 16 20 20 O 1.21316 * 120.00269 * 0.02562 * 19 18 17 21 21 C 1.38624 * 106.96710 * 0.02562 * 18 17 16 22 22 N 1.34108 * 108.34510 * 359.72304 * 21 18 17 23 23 H 0.96998 * 125.35032 * 180.27872 * 22 21 18 24 24 H 1.08998 * 109.46503 * 299.99562 * 1 2 3 25 25 H 1.08996 * 109.47233 * 59.99016 * 1 2 3 26 26 H 1.08991 * 109.47308 * 179.97438 * 1 2 3 27 27 H 0.97003 * 119.99874 * 180.02562 * 7 6 4 28 28 H 1.08995 * 109.47559 * 95.82830 * 13 12 2 29 29 H 1.09004 * 109.47613 * 215.82735 * 13 12 2 30 30 H 1.09006 * 109.47235 * 335.82374 * 13 12 2 31 31 H 1.07993 * 126.50395 * 0.03045 * 17 16 14 32 32 H 1.08002 * 119.99698 * 179.97438 * 19 18 17 33 33 H 1.08002 * 125.82406 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1311 6 6 1.6994 -0.2396 2.4827 7 7 0.9429 0.8294 2.6034 8 14 2.3227 -1.1199 4.0077 9 1 3.1476 -2.2866 3.6034 10 1 3.1475 -0.1862 4.8159 11 1 1.1681 -1.5870 4.8163 12 7 2.0183 -0.6905 -1.1963 13 6 1.6643 -2.0930 -1.4282 14 6 2.7886 -0.0338 -2.0862 15 8 3.1737 1.0941 -1.8418 16 6 3.1629 -0.6797 -3.3508 17 6 4.0547 -0.1953 -4.2597 18 6 4.1121 -1.1301 -5.3214 19 6 4.9390 -1.0302 -6.5279 20 8 5.6672 -0.0730 -6.6868 21 6 3.2370 -2.1572 -5.0038 22 7 2.6760 -1.8820 -3.8172 23 1 2.0276 -2.4401 -3.3601 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7089 1.1609 3.4845 28 1 0.7965 -2.1449 -2.0857 29 1 2.5045 -2.6076 -1.8945 30 1 1.4286 -2.5704 -0.4770 31 1 4.6126 0.7262 -4.1841 32 1 4.9005 -1.8093 -7.2749 33 1 3.0440 -3.0323 -5.6066 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293035227.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:54 Heat of formation + Delta-G solvation = -32.054173 kcal Electronic energy + Delta-G solvation = -18005.048511 eV Core-core repulsion = 15031.689523 eV Total energy + Delta-G solvation = -2973.358988 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.62349 -40.28917 -39.29259 -37.33305 -34.96877 -32.63370 -31.65102 -30.28631 -27.95874 -27.34792 -25.49802 -24.01155 -22.01934 -21.18709 -20.42865 -18.67264 -18.43179 -17.62282 -17.11221 -16.51998 -16.43717 -15.80415 -15.50353 -15.36658 -14.77893 -14.53785 -14.45792 -14.33919 -14.09147 -13.60862 -13.25162 -13.09528 -12.89169 -12.77952 -12.65832 -12.25777 -12.14726 -11.24920 -11.05242 -10.63816 -10.56601 -10.17023 -9.59322 -9.23342 -8.18449 -6.35501 0.50267 0.57645 1.39090 1.41836 1.52348 2.00643 2.16095 2.31543 2.44042 2.52279 3.10204 3.54335 3.81114 4.05349 4.06033 4.25520 4.41265 4.52407 4.70301 4.82985 4.84186 4.90342 4.99695 5.13270 5.40854 5.43373 5.53747 5.60343 5.70112 5.98754 6.10621 6.40440 6.65752 6.72217 6.83168 7.18777 7.38044 8.86383 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.039553 B = 0.004972 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.734362 B = 5630.461305 C = 5679.805041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.260 3.740 3 H 0.006 0.994 4 C -0.540 4.540 5 H 0.062 0.938 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.967 3.033 9 H -0.264 1.264 10 H -0.288 1.288 11 H -0.272 1.272 12 N -0.597 5.597 13 C 0.059 3.941 14 C 0.562 3.438 15 O -0.599 6.599 16 C -0.074 4.074 17 C -0.082 4.082 18 C -0.321 4.321 19 C 0.419 3.581 20 O -0.537 6.537 21 C 0.141 3.859 22 N -0.516 5.516 23 H 0.440 0.560 24 H 0.068 0.932 25 H 0.020 0.980 26 H 0.053 0.947 27 H 0.265 0.735 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.168 0.832 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.719 -15.256 -15.333 21.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.159 3.841 3 H 0.024 0.976 4 C -0.578 4.578 5 H 0.080 0.920 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.792 3.208 9 H -0.188 1.188 10 H -0.214 1.214 11 H -0.197 1.197 12 N -0.327 5.327 13 C -0.083 4.083 14 C 0.352 3.648 15 O -0.481 6.481 16 C -0.184 4.184 17 C -0.108 4.108 18 C -0.328 4.328 19 C 0.283 3.717 20 O -0.415 6.415 21 C -0.004 4.004 22 N -0.119 5.119 23 H 0.289 0.711 24 H 0.087 0.913 25 H 0.039 0.961 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.135 0.865 32 H 0.184 0.816 33 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -0.401 -14.136 -14.944 20.574 hybrid contribution 0.012 0.337 1.637 1.671 sum -0.389 -13.799 -13.307 19.174 Atomic orbital electron populations 1.21873 0.96448 1.00544 1.00076 1.18625 0.91946 0.92153 0.81412 0.97621 1.21571 1.32025 1.13200 0.91005 0.91959 1.25749 0.94984 0.95615 1.02091 1.70029 1.37194 1.23837 1.24483 0.85372 0.78235 0.78418 0.78756 1.18835 1.21438 1.19694 1.48131 1.49019 1.13123 1.22408 1.22236 1.00722 0.80882 1.04450 1.17843 0.78516 0.85199 0.83255 1.90758 1.57044 1.21499 1.78816 1.19706 1.08150 0.92618 0.97967 1.21250 0.96610 0.99317 0.93583 1.21160 1.10527 0.99610 1.01515 1.23971 0.74906 0.87167 0.85636 1.90538 1.36666 1.36046 1.78271 1.23675 0.91219 0.99511 0.85958 1.42944 1.34536 1.16555 1.17845 0.71122 0.91284 0.96123 0.92758 0.92561 0.89826 0.89678 0.89301 0.86521 0.81608 0.72674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.13 8.97 71.98 0.65 -5.49 16 2 C 0.26 13.54 2.62 44.25 0.12 13.65 16 3 H 0.01 0.37 6.91 -2.39 -0.02 0.35 16 4 C -0.54 -29.02 7.95 25.60 0.20 -28.82 16 5 H 0.06 3.24 7.43 -2.91 -0.02 3.21 16 6 C 0.02 0.84 5.30 84.66 0.45 1.29 16 7 N -0.92 -52.61 11.32 21.45 0.24 -52.37 16 8 Si 0.97 42.60 29.54 68.60 2.03 44.62 16 9 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 10 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 11 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 12 N -0.60 -25.02 2.75 -831.31 -2.29 -27.31 16 13 C 0.06 1.61 7.72 127.77 0.99 2.59 16 14 C 0.56 25.01 7.63 86.49 0.66 25.67 16 15 O -0.60 -33.45 16.22 -4.26 -0.07 -33.52 16 16 C -0.07 -2.43 6.57 39.99 0.26 -2.17 16 17 C -0.08 -2.71 10.38 22.63 0.23 -2.48 16 18 C -0.32 -6.83 6.13 -20.18 -0.12 -6.95 16 19 C 0.42 7.75 11.68 70.01 0.82 8.57 16 20 O -0.54 -16.59 17.74 -3.14 -0.06 -16.64 16 21 C 0.14 1.58 11.93 84.44 1.01 2.59 16 22 N -0.52 -9.45 4.97 -183.14 -0.91 -10.36 16 23 H 0.44 5.57 4.84 -92.71 -0.45 5.12 16 24 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 25 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.05 2.22 7.67 -2.39 -0.02 2.20 16 27 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 28 H 0.08 1.62 7.42 -2.39 -0.02 1.61 16 29 H 0.09 1.77 5.69 -2.38 -0.01 1.76 16 30 H 0.09 2.61 7.11 -2.38 -0.02 2.59 16 31 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 32 H 0.17 0.80 8.06 -2.91 -0.02 0.77 16 33 H 0.26 -0.88 8.06 -2.91 -0.02 -0.90 16 Total: -1.00 -85.95 284.52 4.90 -81.06 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 0.69 Total: 6.06 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 5.26 Total: 8.46 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -2.96 Total: -90.04 kcal Atomic # 8 Polarization: -50.04 SS G_CDS: -0.12 Total: -50.16 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -85.95 4.90 -81.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293035227.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.003 kcal (2) G-P(sol) polarization free energy of solvation -85.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds