Wall clock time and date at job start Mon Mar 30 2020 18:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35995 * 116.99762 * 179.97438 * 3 2 1 5 5 C 1.38706 * 119.98445 * 359.72680 * 4 3 2 6 6 C 1.38105 * 120.01857 * 179.72828 * 5 4 3 7 7 C 1.38859 * 119.98477 * 0.56528 * 6 5 4 8 8 N 1.39931 * 120.02350 * 179.68442 * 7 6 5 9 9 N 1.40100 * 120.00166 * 0.02562 * 8 7 6 10 10 C 1.34773 * 120.00455 * 180.02562 * 9 8 7 11 11 O 1.21694 * 119.99808 * 359.97438 * 10 9 8 12 12 C 1.46379 * 120.00333 * 180.02562 * 10 9 8 13 13 H 1.08003 * 119.99809 * 359.97438 * 12 10 9 14 14 C 1.40043 * 120.00141 * 179.97438 * 12 10 9 15 15 N 1.30671 * 120.00076 * 359.97438 * 14 12 10 16 16 Si 1.86796 * 120.00068 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47331 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47026 * 119.99962 * 16 14 12 19 19 H 1.48504 * 109.47307 * 240.00166 * 16 14 12 20 20 C 1.38869 * 119.95835 * 359.70587 * 7 6 5 21 21 C 1.38104 * 119.97993 * 359.97438 * 20 7 6 22 22 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 24 24 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 25 25 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 26 26 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 27 27 H 1.07993 * 119.98781 * 359.97438 * 5 4 3 28 28 H 1.08007 * 120.00898 * 180.26980 * 6 5 4 29 29 H 0.97005 * 120.00541 * 180.02562 * 8 7 6 30 30 H 0.97005 * 119.99883 * 0.02562 * 9 8 7 31 31 H 0.97001 * 120.00098 * 179.97438 * 15 14 12 32 32 H 1.08001 * 120.00689 * 179.97438 * 20 7 6 33 33 H 1.08002 * 119.98723 * 180.02562 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3545 1.5256 0.0005 5 6 4.1991 0.4254 0.0068 6 6 5.5684 0.6055 0.0017 7 6 6.0995 1.8885 0.0021 8 7 7.4868 2.0719 0.0036 9 7 8.3403 0.9610 0.0041 10 6 9.6764 1.1376 0.0061 11 8 10.1415 2.2622 0.0069 12 6 10.5682 -0.0232 0.0060 13 1 10.1555 -1.0212 0.0048 14 6 11.9565 0.1604 0.0075 15 7 12.4559 1.3679 0.0084 16 14 13.0945 -1.3209 0.0081 17 1 12.2859 -2.5664 0.0062 18 1 13.9525 -1.2865 -1.2035 19 1 13.9500 -1.2875 1.2216 20 6 5.2532 2.9895 0.0016 21 6 3.8842 2.8075 0.0000 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 3.7859 -0.5724 0.0116 28 1 6.2259 -0.2513 0.0021 29 1 7.8576 2.9683 0.0043 30 1 7.9696 0.0646 0.0030 31 1 13.4176 1.4951 0.0099 32 1 5.6655 3.9877 0.0023 33 1 3.2258 3.6637 -0.0008 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294198806.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:59 Heat of formation + Delta-G solvation = -18.029651 kcal Electronic energy + Delta-G solvation = -17166.063620 eV Core-core repulsion = 14193.312781 eV Total energy + Delta-G solvation = -2972.750839 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.88376 -38.20201 -36.96397 -34.38455 -32.60345 -31.81686 -30.92702 -30.14238 -27.34018 -25.73160 -24.04677 -22.14173 -21.30204 -20.13457 -18.34276 -17.81027 -16.47578 -16.15640 -16.02371 -15.32595 -15.07350 -14.26188 -13.77819 -13.61452 -13.42498 -13.15300 -13.08990 -12.71027 -12.54388 -12.17603 -12.15845 -11.64487 -11.35537 -11.23047 -11.00592 -10.67742 -10.53652 -10.33489 -10.03941 -9.00443 -8.78956 -8.07115 -7.93065 -6.37933 -6.26768 -4.82197 1.58084 1.92854 3.04689 3.05225 3.15844 3.23013 3.39548 4.04845 4.09618 4.42781 4.81221 4.85818 5.03534 5.11695 5.14588 5.35570 5.39226 5.55622 5.61747 5.63983 5.65895 5.86001 6.02737 6.23529 6.39009 6.63983 6.68718 6.92488 7.27404 7.34889 7.66808 7.96294 8.22122 8.69301 8.84160 9.23704 10.40038 10.56750 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.045256 B = 0.003814 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.547196 B = 7339.766496 C = 7937.865338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.324 6.324 4 C 0.045 3.955 5 C -0.146 4.146 6 C -0.175 4.175 7 C 0.206 3.794 8 N -0.535 5.535 9 N -0.565 5.565 10 C 0.555 3.445 11 O -0.580 6.580 12 C -0.535 4.535 13 H 0.074 0.926 14 C 0.087 3.913 15 N -0.763 5.763 16 Si 0.916 3.084 17 H -0.262 1.262 18 H -0.275 1.275 19 H -0.275 1.275 20 C -0.171 4.171 21 C -0.091 4.091 22 H 0.074 0.926 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.427 0.573 30 H 0.402 0.598 31 H 0.271 0.729 32 H 0.127 0.873 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.318 -3.726 -0.010 17.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.239 6.239 4 C -0.001 4.001 5 C -0.165 4.165 6 C -0.199 4.199 7 C 0.097 3.903 8 N -0.255 5.255 9 N -0.316 5.316 10 C 0.360 3.640 11 O -0.461 6.461 12 C -0.573 4.573 13 H 0.092 0.908 14 C -0.134 4.134 15 N -0.391 5.391 16 Si 0.741 3.259 17 H -0.186 1.186 18 H -0.200 1.200 19 H -0.200 1.200 20 C -0.196 4.196 21 C -0.110 4.110 22 H 0.093 0.907 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.139 0.861 28 H 0.138 0.862 29 H 0.268 0.732 30 H 0.240 0.760 31 H 0.082 0.918 32 H 0.145 0.855 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.750 -2.781 -0.009 16.979 hybrid contribution 0.642 -1.073 0.001 1.251 sum -16.108 -3.854 -0.008 16.562 Atomic orbital electron populations 1.21757 0.93308 1.02469 1.03261 1.22632 0.95334 0.82901 1.01020 1.86003 1.19441 1.28146 1.90319 1.18582 0.81837 0.93973 1.05743 1.20879 0.93398 0.97581 1.04687 1.20240 0.94588 0.95430 1.09669 1.17807 0.82420 0.94068 0.95956 1.43464 0.98308 1.03647 1.80038 1.45745 1.02570 0.99677 1.83641 1.18575 0.77279 0.91185 0.77001 1.90617 1.74091 1.25696 1.55694 1.20705 0.90090 0.91780 1.54735 0.90806 1.25715 0.98487 0.96708 0.92473 1.70019 1.13055 1.21765 1.34308 0.86170 0.79903 0.81515 0.78361 1.18591 1.19996 1.19990 1.20213 0.91949 0.97419 1.10017 1.20006 0.93958 0.94560 1.02504 0.90749 0.91724 0.91718 0.92506 0.92510 0.86056 0.86188 0.73160 0.75980 0.91799 0.85511 0.85622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.06 0.56 5.46 37.16 0.20 0.76 16 3 O -0.32 -4.30 10.14 -19.72 -0.20 -4.50 16 4 C 0.04 0.65 6.69 -39.24 -0.26 0.38 16 5 C -0.15 -2.06 9.03 -39.46 -0.36 -2.42 16 6 C -0.17 -2.79 9.48 -39.40 -0.37 -3.16 16 7 C 0.21 3.56 6.72 -83.70 -0.56 2.99 16 8 N -0.54 -10.84 6.46 32.44 0.21 -10.63 16 9 N -0.57 -12.75 6.21 30.19 0.19 -12.56 16 10 C 0.55 15.39 7.86 -12.99 -0.10 15.29 16 11 O -0.58 -18.21 14.86 5.19 0.08 -18.14 16 12 C -0.53 -14.53 9.54 -35.63 -0.34 -14.87 16 13 H 0.07 1.81 7.85 -52.48 -0.41 1.40 16 14 C 0.09 2.34 5.50 -17.37 -0.10 2.24 16 15 N -0.76 -22.17 11.83 55.55 0.66 -21.52 16 16 Si 0.92 19.37 29.56 -169.99 -5.02 14.35 16 17 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 18 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 20 C -0.17 -2.59 9.89 -39.40 -0.39 -2.98 16 21 C -0.09 -1.29 9.98 -39.46 -0.39 -1.68 16 22 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 26 H 0.06 0.52 7.65 -51.93 -0.40 0.12 16 27 H 0.12 1.41 6.29 -52.49 -0.33 1.08 16 28 H 0.12 1.83 6.20 -52.48 -0.33 1.50 16 29 H 0.43 8.86 8.01 -182.59 -1.46 7.40 16 30 H 0.40 7.94 6.58 -182.59 -1.20 6.74 16 31 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 32 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 289.90 15.07 4.37 4.37 Total: -1.00 -32.94 289.90 -7.79 -40.73 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -5.78 Total: 12.07 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.29 Total: -4.18 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 1.05 Total: -44.71 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.12 Total: -22.64 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.94 -7.79 -40.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294198806.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.702 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds