Wall clock time and date at job start Mon Mar 30 2020 18:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46769 * 2 1 4 4 C 1.50700 * 109.46781 * 240.00254 * 2 1 3 5 5 H 1.08006 * 119.99723 * 240.00113 * 4 2 1 6 6 C 1.37878 * 120.00527 * 59.99960 * 4 2 1 7 7 N 1.31515 * 119.99461 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00209 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47170 * 60.00326 * 8 6 4 10 10 H 1.48498 * 109.46932 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47162 * 300.00069 * 8 6 4 12 12 N 1.46494 * 109.47118 * 120.00496 * 2 1 3 13 13 C 1.34784 * 119.99635 * 274.99773 * 12 2 1 14 14 O 1.21489 * 120.00309 * 0.02562 * 13 12 2 15 15 C 1.48332 * 119.99602 * 180.02562 * 13 12 2 16 16 C 1.42277 * 126.93293 * 179.70909 * 15 13 12 17 17 C 1.35321 * 103.91800 * 179.90878 * 16 15 13 18 18 C 1.50702 * 126.66386 * 180.08782 * 17 16 15 19 19 C 1.53000 * 117.49703 * 188.91262 * 18 17 16 20 20 C 1.52991 * 117.49654 * 120.28924 * 18 17 16 21 21 O 1.34012 * 106.66903 * 0.35175 * 17 16 15 22 22 N 1.20910 * 111.84585 * 359.75745 * 21 17 16 23 23 H 1.08997 * 109.47041 * 300.00119 * 1 2 3 24 24 H 1.09005 * 109.46855 * 59.99655 * 1 2 3 25 25 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 26 26 H 0.96997 * 119.99851 * 179.97438 * 7 6 4 27 27 H 0.96995 * 120.00292 * 95.27206 * 12 2 1 28 28 H 1.07998 * 128.03819 * 0.03535 * 16 15 13 29 29 H 1.09002 * 115.54942 * 334.61696 * 18 17 16 30 30 H 1.08997 * 117.49637 * 359.97438 * 19 18 17 31 31 H 1.08997 * 117.49784 * 145.02355 * 19 18 17 32 32 H 1.09002 * 117.49491 * 214.97629 * 20 18 17 33 33 H 1.08995 * 117.50047 * 359.97316 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5197 -4.0083 10 1 1.8278 -0.4192 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8578 1.1604 2.4119 15 6 2.6421 -0.7175 3.5680 16 6 2.8391 -0.1546 4.8597 17 6 3.2938 -1.1916 5.6008 18 6 3.6663 -1.1592 7.0607 19 6 4.3535 -2.3965 7.6420 20 6 2.9001 -2.0867 8.0059 21 8 3.3541 -2.2513 4.7828 22 7 2.9914 -1.9763 3.6626 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.7087 1.1613 -3.4843 27 1 2.2528 -1.6308 1.1515 28 1 2.6643 0.8632 5.1759 29 1 3.9701 -0.1863 7.4470 30 1 4.5358 -3.2339 6.9685 31 1 5.1096 -2.2377 8.4108 32 1 2.7001 -1.7241 9.0142 33 1 2.1263 -2.7199 7.5719 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299684445.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:11 Heat of formation + Delta-G solvation = 45.517930 kcal Electronic energy + Delta-G solvation = -17543.299778 eV Core-core repulsion = 14573.304569 eV Total energy + Delta-G solvation = -2969.995209 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.97128 -38.83683 -37.65900 -34.92178 -33.80796 -32.45271 -31.40958 -28.95582 -25.30769 -24.84344 -23.69583 -22.74362 -22.35508 -20.57144 -19.25034 -17.77374 -17.61261 -16.86227 -16.15219 -15.59279 -15.23625 -14.56336 -14.29034 -14.08980 -13.52927 -13.13955 -12.60934 -12.44186 -11.93149 -11.76279 -11.63194 -11.38648 -11.12910 -10.98546 -10.82584 -10.78220 -10.38769 -10.24968 -10.21479 -9.46947 -9.23288 -9.09112 -8.58019 -8.02117 -6.13891 -4.23367 1.26170 1.80097 2.88271 3.26595 3.31089 3.32855 3.49462 3.67943 3.75836 4.12154 4.30608 4.40147 4.52532 4.57570 5.03182 5.16563 5.18565 5.28072 5.29213 5.49868 5.65913 5.70055 5.74647 5.96595 6.78825 6.92123 7.09432 7.33225 7.48965 7.65981 7.85621 8.10240 8.13147 8.56877 8.71106 8.96104 9.43542 10.92280 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.047798 B = 0.004242 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.661057 B = 6598.482196 C = 6959.052327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.052 0.948 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.904 3.096 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.688 5.688 13 C 0.580 3.420 14 O -0.537 6.537 15 C -0.012 4.012 16 C -0.176 4.176 17 C -0.015 4.015 18 C -0.083 4.083 19 C -0.167 4.167 20 C -0.163 4.163 21 O 0.115 5.885 22 N -0.333 5.333 23 H 0.016 0.984 24 H 0.093 0.907 25 H 0.028 0.972 26 H 0.266 0.734 27 H 0.396 0.604 28 H 0.179 0.821 29 H 0.139 0.861 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.755 -5.553 18.896 20.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.070 0.930 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.732 3.268 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.335 5.335 13 C 0.362 3.638 14 O -0.414 6.414 15 C -0.172 4.172 16 C -0.198 4.198 17 C -0.078 4.078 18 C -0.102 4.102 19 C -0.204 4.204 20 C -0.200 4.200 21 O 0.041 5.959 22 N -0.035 5.035 23 H 0.035 0.965 24 H 0.112 0.888 25 H 0.047 0.953 26 H 0.076 0.924 27 H 0.229 0.771 28 H 0.197 0.803 29 H 0.157 0.843 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.449 -5.554 17.792 19.162 hybrid contribution 0.306 -0.113 -0.546 0.636 sum 4.754 -5.666 17.246 18.765 Atomic orbital electron populations 1.22093 0.98071 0.99376 1.01108 1.18880 0.91311 0.94067 0.79542 0.92983 1.21169 1.32712 1.13384 0.90186 0.91980 1.24880 0.94723 0.94946 0.99058 1.69889 1.35713 1.22399 1.24104 0.86460 0.79208 0.79600 0.81577 1.20079 1.21061 1.20114 1.46510 1.63104 1.14060 1.09844 1.16972 0.79146 0.86094 0.81613 1.90750 1.51542 1.14799 1.84315 1.23971 1.04648 0.90666 0.97889 1.22353 1.04665 1.01700 0.91103 1.23361 1.03376 0.86783 0.94257 1.20398 1.07071 0.98007 0.84678 1.23084 0.95840 0.98176 1.03314 1.23119 0.95529 1.01802 0.99597 1.84738 1.61955 1.35066 1.14131 1.74191 1.13831 1.16708 0.98780 0.96521 0.88825 0.95280 0.92432 0.77116 0.80337 0.84312 0.87715 0.87621 0.87530 0.88100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.26 37.16 0.34 -3.44 16 2 C 0.26 6.95 2.56 -69.08 -0.18 6.78 16 3 H 0.05 1.55 7.58 -51.93 -0.39 1.16 16 4 C -0.54 -14.67 8.73 -34.44 -0.30 -14.97 16 5 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 7 N -0.88 -25.13 11.32 55.43 0.63 -24.51 16 8 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.69 -15.76 5.07 -55.72 -0.28 -16.04 16 13 C 0.58 12.83 7.81 -12.10 -0.09 12.73 16 14 O -0.54 -13.36 16.61 5.38 0.09 -13.27 16 15 C -0.01 -0.22 7.19 -82.53 -0.59 -0.81 16 16 C -0.18 -2.56 10.92 -39.07 -0.43 -2.99 16 17 C -0.01 -0.18 6.93 -35.35 -0.24 -0.42 16 18 C -0.08 -0.65 6.27 -91.77 -0.58 -1.23 16 19 C -0.17 -1.07 10.18 -26.73 -0.27 -1.35 16 20 C -0.16 -1.06 10.23 -26.73 -0.27 -1.33 16 21 O 0.11 1.62 10.96 17.25 0.19 1.81 16 22 N -0.33 -5.66 11.84 33.29 0.39 -5.27 16 23 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.09 2.56 6.07 -51.93 -0.32 2.24 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.40 8.37 8.29 -40.82 -0.34 8.03 16 28 H 0.18 2.28 8.06 -52.49 -0.42 1.86 16 29 H 0.14 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.10 0.74 8.01 -51.93 -0.42 0.32 16 31 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 294.96 15.07 4.44 4.44 Total: -1.00 -31.12 294.96 -6.23 -37.35 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -3.96 Total: 4.76 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -2.71 Total: -5.27 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.74 Total: -45.81 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.28 Total: -11.45 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.12 -6.23 -37.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299684445.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.867 kcal (2) G-P(sol) polarization free energy of solvation -31.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds