Wall clock time and date at job start Mon Mar 30 2020 18:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00114 * 2 1 4 4 H 1.48501 * 109.47158 * 270.00561 * 3 2 1 5 5 H 1.48503 * 109.47269 * 30.00363 * 3 2 1 6 6 H 1.48495 * 109.47287 * 150.00669 * 3 2 1 7 7 C 1.37877 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99788 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00247 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.47259 * 180.02562 * 9 7 2 11 11 C 1.46498 * 119.99737 * 262.76122 * 10 9 7 12 12 C 1.52998 * 109.47190 * 274.95557 * 11 10 9 13 13 C 1.52993 * 117.50246 * 247.82745 * 12 11 10 14 14 C 1.53000 * 117.50082 * 179.16389 * 12 11 10 15 15 C 1.34777 * 120.00085 * 82.75903 * 10 9 7 16 16 O 1.21616 * 120.00016 * 181.05997 * 15 10 9 17 17 C 1.47235 * 119.99858 * 1.05715 * 15 10 9 18 18 C 1.37004 * 127.18623 * 170.60240 * 17 15 10 19 19 N 1.33322 * 106.37013 * 180.02562 * 18 17 15 20 20 N 1.28508 * 109.44116 * 359.97438 * 19 18 17 21 21 N 1.28718 * 110.63900 * 0.02562 * 20 19 18 22 22 H 0.97003 * 126.03524 * 179.72977 * 21 20 19 23 23 H 0.96999 * 119.99738 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47324 * 60.00283 * 9 7 2 25 25 H 1.09001 * 109.47072 * 300.00063 * 9 7 2 26 26 H 1.09001 * 109.47515 * 34.95921 * 11 10 9 27 27 H 1.09007 * 109.47286 * 154.95885 * 11 10 9 28 28 H 1.08999 * 115.54711 * 33.49983 * 12 11 10 29 29 H 1.09002 * 117.49920 * 359.97438 * 13 12 11 30 30 H 1.09006 * 117.50123 * 145.02212 * 13 12 11 31 31 H 1.08999 * 117.50148 * 214.98336 * 14 12 11 32 32 H 1.09005 * 117.49562 * 0.02562 * 14 12 11 33 33 H 1.08003 * 126.81200 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.5574 -4.2733 -1.2592 12 6 1.5210 -5.3527 -1.5781 13 6 1.9792 -6.8113 -1.5196 14 6 1.7049 -6.1484 -2.8719 15 6 2.7527 -4.0294 1.1573 16 8 3.5575 -4.9411 1.1550 17 6 2.3789 -3.3807 2.4251 18 6 2.7009 -3.7913 3.6919 19 7 2.1530 -2.9059 4.5246 20 7 1.5344 -2.0067 3.8462 21 7 1.6359 -2.2402 2.5845 22 1 1.2511 -1.7057 1.8724 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5570 0.8897 26 1 2.5750 -3.5377 -2.0633 27 1 3.5419 -4.7316 -1.1644 28 1 0.5009 -5.1326 -1.2633 29 1 3.0191 -7.0019 -1.2544 30 1 1.2604 -7.5509 -1.1668 31 1 0.8058 -6.4522 -3.4081 32 1 2.5645 -5.9032 -3.4957 33 1 3.2832 -4.6598 3.9622 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331836854.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:31 Heat of formation + Delta-G solvation = 77.382926 kcal Electronic energy + Delta-G solvation = -18586.312746 eV Core-core repulsion = 15649.992058 eV Total energy + Delta-G solvation = -2936.320688 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.31996 -40.81301 -38.27039 -37.04722 -34.73852 -34.16810 -32.37759 -29.95685 -28.24277 -25.55247 -24.41972 -23.74543 -23.16781 -22.07038 -21.15566 -19.15401 -18.61034 -17.91959 -17.62363 -17.20205 -16.53109 -16.12584 -15.79723 -15.31578 -14.92227 -14.79577 -14.46800 -13.71095 -13.48957 -13.17275 -12.99958 -12.76740 -12.61138 -12.35828 -12.32555 -12.19589 -11.92488 -11.65130 -11.40474 -11.15956 -10.85386 -10.80805 -10.52909 -9.70141 -8.46553 -6.67800 -0.00670 1.28270 1.33617 1.39275 1.45834 1.71039 2.02312 2.10621 2.28808 2.83599 2.94431 3.33147 3.64822 3.82042 4.00429 4.02968 4.13946 4.30760 4.36733 4.46139 4.69066 4.76722 4.82675 4.88952 5.04053 5.04957 5.25579 5.29776 5.42735 5.57634 5.67527 5.89179 6.22200 6.51458 6.95825 7.09462 7.32581 8.55596 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.015956 B = 0.009727 C = 0.006693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.364219 B = 2877.963138 C = 4182.440733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.037 3.963 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.575 4.575 8 H 0.062 0.938 9 C 0.230 3.770 10 N -0.586 5.586 11 C 0.149 3.851 12 C -0.188 4.188 13 C -0.174 4.174 14 C -0.153 4.153 15 C 0.594 3.406 16 O -0.556 6.556 17 C -0.071 4.071 18 C 0.019 3.981 19 N -0.298 5.298 20 N -0.090 5.090 21 N -0.348 5.348 22 H 0.471 0.529 23 H 0.279 0.721 24 H 0.050 0.950 25 H 0.020 0.980 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.980 -7.445 -3.857 8.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.168 4.168 3 Si 0.774 3.226 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.614 4.614 8 H 0.080 0.920 9 C 0.108 3.892 10 N -0.315 5.315 11 C 0.027 3.973 12 C -0.207 4.207 13 C -0.211 4.211 14 C -0.190 4.190 15 C 0.380 3.620 16 O -0.435 6.435 17 C -0.207 4.207 18 C -0.143 4.143 19 N -0.161 5.161 20 N -0.072 5.072 21 N -0.090 5.090 22 H 0.337 0.663 23 H 0.089 0.911 24 H 0.068 0.932 25 H 0.038 0.962 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 1.655 -6.874 -2.759 7.589 hybrid contribution 0.280 0.814 -1.199 1.476 sum 1.935 -6.060 -3.958 7.492 Atomic orbital electron populations 1.69954 1.06817 1.29515 1.47065 1.25626 0.95643 1.02198 0.93321 0.85656 0.78722 0.79268 0.78996 1.19089 1.20086 1.20034 1.21710 0.94083 0.90911 1.54676 0.92021 1.19518 0.88073 0.83319 0.98289 1.48027 1.43595 1.33385 1.06503 1.21099 0.97603 0.94222 0.84414 1.22617 0.99768 0.93458 1.04848 1.23043 1.02381 0.94414 1.01259 1.23030 1.04242 1.01825 0.89903 1.16840 0.80864 0.82117 0.82184 1.90722 1.35360 1.30865 1.86560 1.22520 1.06030 0.93780 0.98374 1.24257 1.01702 1.01688 0.86604 1.74822 1.11280 1.02151 1.27852 1.78044 1.19238 1.20670 0.89254 1.47722 1.33283 1.19017 1.09019 0.66333 0.91103 0.93156 0.96241 0.89472 0.89950 0.88878 0.88956 0.88434 0.87310 0.87525 0.75598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -43.72 13.29 21.45 0.28 -43.44 16 2 C 0.04 1.75 5.08 84.65 0.43 2.18 16 3 Si 0.95 38.64 29.54 68.60 2.03 40.67 16 4 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 5 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.58 -26.72 7.36 25.60 0.19 -26.53 16 8 H 0.06 2.98 7.81 -2.91 -0.02 2.95 16 9 C 0.23 9.86 4.75 85.63 0.41 10.26 16 10 N -0.59 -22.70 2.48 -830.26 -2.06 -24.76 16 11 C 0.15 4.83 5.71 86.38 0.49 5.33 16 12 C -0.19 -5.28 6.01 -10.80 -0.06 -5.35 16 13 C -0.17 -4.24 10.18 30.62 0.31 -3.93 16 14 C -0.15 -3.24 10.25 30.62 0.31 -2.92 16 15 C 0.59 23.97 7.60 86.61 0.66 24.63 16 16 O -0.56 -22.98 16.43 -4.08 -0.07 -23.05 16 17 C -0.07 -2.86 6.70 40.41 0.27 -2.59 16 18 C 0.02 0.69 11.88 84.18 1.00 1.69 16 19 N -0.30 -11.86 12.35 -57.50 -0.71 -12.57 16 20 N -0.09 -3.88 13.35 37.02 0.49 -3.38 16 21 N -0.35 -14.98 5.81 -48.52 -0.28 -15.26 16 22 H 0.47 21.23 3.53 -219.89 -0.78 20.45 16 23 H 0.28 12.96 8.31 -92.71 -0.77 12.19 16 24 H 0.05 2.22 8.02 -2.39 -0.02 2.20 16 25 H 0.02 0.91 5.16 -2.39 -0.01 0.89 16 26 H 0.09 2.75 8.11 -2.39 -0.02 2.73 16 27 H 0.08 2.67 7.02 -2.38 -0.02 2.66 16 28 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 29 H 0.09 2.34 8.05 -2.39 -0.02 2.32 16 30 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 31 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.23 6.42 8.06 -2.91 -0.02 6.39 16 Total: -1.00 -52.31 286.69 4.06 -48.25 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.36 Total: 30.78 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 4.01 Total: 2.76 kcal Atomic # 7 Polarization: -97.14 SS G_CDS: -2.27 Total: -99.41 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.07 Total: -23.05 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Total: -52.31 4.06 -48.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331836854.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.631 kcal (2) G-P(sol) polarization free energy of solvation -52.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds