Wall clock time and date at job start Mon Mar 30 2020 18:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21316 * 120.00172 * 2 1 4 4 C 1.46621 * 120.00001 * 180.02562 * 2 1 3 5 5 C 1.38627 * 126.51407 * 359.97329 * 4 2 1 6 6 N 1.34109 * 108.34556 * 180.02562 * 5 4 2 7 7 H 0.96997 * 125.34188 * 180.02562 * 6 5 4 8 8 C 1.37839 * 109.30426 * 0.02562 * 6 5 4 9 9 C 1.46846 * 125.79805 * 179.97438 * 8 6 5 10 10 O 1.21670 * 120.00165 * 180.02562 * 9 8 6 11 11 N 1.34774 * 119.99920 * 0.02562 * 9 8 6 12 12 C 1.46506 * 120.00072 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47289 * 180.02562 * 12 11 9 14 14 C 1.50696 * 109.47242 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99967 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00542 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99408 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00405 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46879 * 59.99995 * 18 16 14 20 20 H 1.48503 * 109.47086 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47288 * 300.00002 * 18 16 14 22 22 C 1.36235 * 108.39697 * 0.23528 * 8 6 5 23 23 H 1.08997 * 109.46925 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46862 * 299.99958 * 1 2 3 25 25 H 1.09000 * 109.47094 * 60.00173 * 1 2 3 26 26 H 1.08005 * 125.82577 * 0.04182 * 5 4 2 27 27 H 0.97001 * 120.00676 * 359.97438 * 11 9 8 28 28 H 1.09001 * 109.47060 * 300.00359 * 12 11 9 29 29 H 1.09004 * 109.47073 * 59.99848 * 12 11 9 30 30 H 1.09001 * 109.46832 * 299.99854 * 13 12 11 31 31 H 1.08996 * 109.46952 * 59.99873 * 13 12 11 32 32 H 0.96999 * 119.99910 * 179.97438 * 17 16 14 33 33 H 1.08002 * 126.50573 * 179.75355 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2401 -1.2698 -0.0006 5 6 1.6877 -2.5412 -0.0006 6 7 2.6869 -3.4356 -0.0006 7 1 2.5773 -4.3994 -0.0010 8 6 3.8941 -2.7702 0.0000 9 6 5.2213 -3.3987 0.0007 10 8 6.2220 -2.7067 0.0017 11 7 5.3308 -4.7419 0.0002 12 6 6.6549 -5.3690 0.0015 13 6 6.4985 -6.8909 0.0000 14 6 7.8605 -7.5358 0.0020 15 1 8.7489 -6.9216 0.0036 16 6 7.9727 -8.9100 0.0017 17 7 6.8909 -9.6580 -0.0009 18 14 9.6610 -9.7094 0.0033 19 1 10.4065 -9.2889 1.2169 20 1 9.5092 -11.1867 0.0020 21 1 10.4093 -9.2882 -1.2081 22 6 3.6466 -1.4306 0.0057 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.6326 -2.7720 -0.0009 27 1 4.5330 -5.2937 -0.0002 28 1 7.2042 -5.0596 -0.8877 29 1 7.2022 -5.0604 0.8923 30 1 5.9491 -7.2005 0.8891 31 1 5.9514 -7.1991 -0.8909 32 1 6.9697 -10.6248 -0.0015 33 1 4.3835 -0.6410 0.0113 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342339572.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:46 Heat of formation + Delta-G solvation = -46.337969 kcal Electronic energy + Delta-G solvation = -16949.990660 eV Core-core repulsion = 13976.012280 eV Total energy + Delta-G solvation = -2973.978380 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.66725 -39.11128 -38.54910 -35.04765 -32.99914 -31.94941 -30.78058 -30.02532 -28.50414 -25.05212 -23.15866 -22.55553 -21.03524 -20.31483 -19.07685 -18.48039 -16.53644 -15.88934 -15.50141 -15.45803 -15.23346 -14.92658 -14.73867 -14.51826 -14.08257 -13.57297 -13.35879 -12.98074 -12.54604 -12.38554 -12.32543 -12.30570 -11.31086 -11.08563 -10.72755 -10.43662 -10.09176 -9.88568 -9.62259 -9.34694 -9.31233 -8.78384 -8.52796 -8.39379 -6.16866 -4.19937 1.16477 1.52739 2.76400 3.00948 3.27094 3.30869 3.33025 3.45335 3.52022 4.12158 4.36338 4.56351 4.78667 4.88386 4.98359 5.18290 5.20592 5.30210 5.51519 5.80158 5.91438 6.14779 6.23937 6.38603 6.53722 6.61810 6.71584 6.98667 7.40340 7.49921 7.55091 7.79888 7.81500 8.18429 8.42812 8.85558 9.45478 10.94763 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.063087 B = 0.003373 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.725193 B = 8300.028347 C = 8718.004077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.423 3.577 3 O -0.472 6.472 4 C -0.273 4.273 5 C 0.084 3.916 6 N -0.522 5.522 7 H 0.424 0.576 8 C -0.052 4.052 9 C 0.577 3.423 10 O -0.532 6.532 11 N -0.721 5.721 12 C 0.121 3.879 13 C 0.013 3.987 14 C -0.524 4.524 15 H 0.060 0.940 16 C 0.060 3.940 17 N -0.895 5.895 18 Si 0.898 3.102 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.055 4.055 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.185 0.815 27 H 0.391 0.609 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.263 0.737 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.131 11.231 0.008 19.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.302 3.698 3 O -0.349 6.349 4 C -0.281 4.281 5 C -0.059 4.059 6 N -0.116 5.116 7 H 0.262 0.738 8 C -0.163 4.163 9 C 0.363 3.637 10 O -0.409 6.409 11 N -0.370 5.370 12 C -0.001 4.001 13 C -0.024 4.024 14 C -0.562 4.562 15 H 0.078 0.922 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.726 3.274 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.080 4.080 23 H 0.096 0.904 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.201 0.799 27 H 0.223 0.777 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.073 0.927 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.032 11.897 0.008 19.170 hybrid contribution 0.262 -1.509 0.001 1.532 sum -14.771 10.387 0.008 18.057 Atomic orbital electron populations 1.22163 0.94166 1.04191 1.04654 1.21539 0.90832 0.86750 0.70638 1.90555 1.72123 1.34166 1.38037 1.20328 0.94320 0.93805 1.19614 1.22608 0.93886 0.88269 1.01152 1.41880 1.05774 1.09701 1.54260 0.73784 1.20422 0.85302 0.92619 1.17928 1.17124 0.86618 0.82551 0.77425 1.90837 1.36536 1.62788 1.50758 1.46248 1.11233 1.05511 1.74035 1.21809 0.81009 0.96003 1.01244 1.19322 0.98376 0.86960 0.97761 1.21003 0.92071 0.91517 1.51627 0.92180 1.24993 0.97036 0.97357 0.94841 1.69936 1.28028 1.05191 1.50240 0.86546 0.83978 0.78020 0.78866 1.20042 1.21211 1.20048 1.21226 0.94928 0.94047 0.97756 0.90416 0.89076 0.89081 0.79853 0.77668 0.92142 0.92141 0.95981 0.95977 0.92734 0.82629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.14 10.28 36.01 0.37 -0.77 16 2 C 0.42 4.54 7.24 -30.93 -0.22 4.32 16 3 O -0.47 -7.05 17.67 5.53 0.10 -6.95 16 4 C -0.27 -2.99 6.12 -105.11 -0.64 -3.63 16 5 C 0.08 0.62 11.30 -16.41 -0.19 0.44 16 6 N -0.52 -4.65 5.90 -9.24 -0.05 -4.70 16 7 H 0.42 2.60 8.13 -40.82 -0.33 2.27 16 8 C -0.05 -0.70 6.98 -82.40 -0.58 -1.28 16 9 C 0.58 9.90 7.79 -12.78 -0.10 9.80 16 10 O -0.53 -11.22 16.86 5.22 0.09 -11.14 16 11 N -0.72 -11.95 5.55 -61.56 -0.34 -12.29 16 12 C 0.12 2.49 5.61 -4.04 -0.02 2.47 16 13 C 0.01 0.32 5.09 -27.89 -0.14 0.17 16 14 C -0.52 -14.20 9.11 -34.44 -0.31 -14.51 16 15 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -25.53 13.29 55.43 0.74 -24.79 16 18 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C -0.05 -0.77 10.37 -39.04 -0.40 -1.17 16 23 H 0.08 0.24 6.44 -51.93 -0.33 -0.09 16 24 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.18 0.49 7.03 -52.48 -0.37 0.12 16 27 H 0.39 5.25 7.55 -40.82 -0.31 4.94 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.16 2.35 8.06 -52.49 -0.42 1.92 16 LS Contribution 297.57 15.07 4.48 4.48 Total: -1.00 -34.72 297.57 -6.19 -40.91 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -3.84 Total: 1.09 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -2.34 Total: -2.62 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 0.34 Total: -41.79 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: 0.19 Total: -18.09 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -34.72 -6.19 -40.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342339572.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.425 kcal (2) G-P(sol) polarization free energy of solvation -34.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds