Wall clock time and date at job start Mon Mar 30 2020 18:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35737 * 116.99900 * 2 1 4 4 C 1.39286 * 120.84524 * 0.02562 * 3 2 1 5 5 C 1.37956 * 119.08697 * 179.97438 * 4 3 2 6 6 N 1.31974 * 120.82715 * 0.02562 * 5 4 3 7 7 C 1.31950 * 121.86305 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.58742 * 179.97438 * 7 6 5 9 9 C 1.50695 * 109.47515 * 305.00211 * 8 7 6 10 10 O 1.21294 * 119.99890 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00181 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00257 * 0.02562 * 11 9 8 13 13 C 1.37102 * 120.00292 * 180.02562 * 11 9 8 14 14 H 1.08001 * 119.99784 * 24.39456 * 13 11 9 15 15 C 1.38944 * 120.00345 * 204.39887 * 13 11 9 16 16 N 1.31413 * 119.99727 * 12.65541 * 15 13 11 17 17 Si 1.86800 * 120.00318 * 192.65387 * 15 13 11 18 18 H 1.48503 * 109.46966 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47391 * 119.99722 * 17 15 13 20 20 H 1.48504 * 109.47286 * 240.00187 * 17 15 13 21 21 C 1.37994 * 120.81910 * 0.27580 * 7 6 5 22 22 H 1.09004 * 109.47094 * 59.99711 * 1 2 3 23 23 H 1.08999 * 109.47005 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.46816 * 299.99934 * 1 2 3 25 25 H 1.07990 * 120.45717 * 0.02562 * 4 3 2 26 26 H 1.08004 * 119.58405 * 180.02562 * 5 4 3 27 27 H 1.08998 * 109.47262 * 184.99676 * 8 7 6 28 28 H 1.09008 * 109.46982 * 65.00312 * 8 7 6 29 29 H 1.08999 * 109.46943 * 85.85636 * 12 11 9 30 30 H 1.08995 * 109.47473 * 205.86376 * 12 11 9 31 31 H 1.09004 * 109.46983 * 325.86455 * 12 11 9 32 32 H 0.97009 * 119.99603 * 180.02562 * 16 15 13 33 33 H 1.08002 * 120.44844 * 179.70421 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3039 2.3886 0.0005 5 6 1.9676 3.5980 0.0011 6 7 3.2865 3.6457 0.0005 7 6 4.0231 2.5509 0.0000 8 6 5.5257 2.6651 -0.0011 9 6 5.9641 3.5157 -1.1653 10 8 5.1375 3.9837 -1.9196 11 7 7.2744 3.7574 -1.3677 12 6 8.2728 3.1927 -0.4563 13 6 7.6732 4.5317 -2.4265 14 1 6.9930 5.2536 -2.8539 15 6 8.9523 4.3877 -2.9497 16 7 9.6902 3.3559 -2.6066 17 14 9.6231 5.6609 -4.1407 18 1 8.6025 6.7164 -4.3635 19 1 10.8516 6.2716 -3.5725 20 1 9.9480 5.0065 -5.4336 21 6 3.4345 1.3028 -0.0057 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 0.2245 2.3566 0.0014 26 1 1.4008 4.5174 0.0019 27 1 5.9655 1.6719 -0.0909 28 1 5.8558 3.1257 0.9301 29 1 8.5297 2.1837 -0.7789 30 1 9.1669 3.8159 -0.4655 31 1 7.8643 3.1581 0.5537 32 1 10.5834 3.2556 -2.9716 33 1 4.0432 0.4107 -0.0109 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346278194.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:50 Heat of formation + Delta-G solvation = -23.894083 kcal Electronic energy + Delta-G solvation = -17802.780224 eV Core-core repulsion = 14829.775084 eV Total energy + Delta-G solvation = -2973.005140 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.47474 -38.63054 -37.74162 -34.55938 -32.43544 -31.44119 -31.27908 -28.45092 -27.22568 -26.00159 -24.17889 -23.25235 -21.75000 -19.07252 -17.66740 -16.90377 -16.68016 -16.00915 -15.78451 -15.52530 -14.85372 -14.46917 -14.15486 -14.00227 -13.68963 -13.24696 -13.11219 -12.23010 -12.12464 -11.99241 -11.55104 -11.36412 -11.22504 -11.10024 -11.05641 -10.80961 -10.25917 -10.16557 -9.09857 -8.93426 -8.84421 -8.70578 -8.21748 -7.54805 -6.24002 -3.79172 1.33563 1.61195 3.08432 3.20946 3.30649 3.38273 3.98512 4.08550 4.24156 4.62044 4.71948 4.94975 4.96265 5.00822 5.07908 5.20951 5.25559 5.41102 5.45388 5.74396 5.96222 5.98863 6.07806 6.14298 6.24140 6.46665 6.75014 6.92186 7.24895 7.26333 7.65404 8.24107 8.45034 8.59725 9.29735 9.52310 10.10562 10.81464 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.044530 B = 0.004666 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.634390 B = 5999.505428 C = 6190.436036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.161 3.839 4 C -0.275 4.275 5 C 0.139 3.861 6 N -0.471 5.471 7 C 0.198 3.802 8 C -0.089 4.089 9 C 0.460 3.540 10 O -0.570 6.570 11 N -0.453 5.453 12 C 0.112 3.888 13 C -0.300 4.300 14 H 0.097 0.903 15 C 0.028 3.972 16 N -0.886 5.886 17 Si 0.924 3.076 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.283 1.283 21 C -0.204 4.204 22 H 0.056 0.944 23 H 0.100 0.900 24 H 0.056 0.944 25 H 0.133 0.867 26 H 0.154 0.846 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.025 0.975 32 H 0.265 0.735 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.445 -5.812 8.183 15.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.108 3.892 4 C -0.296 4.296 5 C -0.019 4.019 6 N -0.183 5.183 7 C 0.061 3.939 8 C -0.129 4.129 9 C 0.247 3.753 10 O -0.453 6.453 11 N -0.173 5.173 12 C -0.032 4.032 13 C -0.428 4.428 14 H 0.115 0.885 15 C -0.174 4.174 16 N -0.526 5.526 17 Si 0.751 3.249 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.209 1.209 21 C -0.225 4.225 22 H 0.075 0.925 23 H 0.118 0.882 24 H 0.074 0.926 25 H 0.151 0.849 26 H 0.171 0.829 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.156 -5.060 7.756 15.282 hybrid contribution -0.176 -0.319 -0.602 0.704 sum -12.332 -5.379 7.154 15.238 Atomic orbital electron populations 1.23068 0.78281 1.03897 1.01526 1.86042 1.21505 1.26723 1.88328 1.19213 0.92304 0.84290 0.93377 1.22114 1.00959 0.93499 1.13005 1.22544 0.90343 0.96649 0.92406 1.67572 1.06272 1.31823 1.12627 1.20628 0.95801 0.87138 0.90331 1.20640 0.89285 1.02238 1.00784 1.19662 0.83359 0.85014 0.87314 1.90548 1.51631 1.54297 1.48815 1.43537 1.03700 1.45049 1.25011 1.21472 0.92887 0.99806 0.89060 1.19677 0.98429 1.15451 1.09268 0.88522 1.25318 0.97180 0.96943 0.97978 1.70006 1.10859 1.26907 1.44784 0.85894 0.78708 0.80572 0.79718 1.19273 1.20739 1.20864 1.21264 0.91896 0.99622 1.09672 0.92488 0.88209 0.92572 0.84934 0.82907 0.88542 0.88206 0.93093 0.90750 0.95645 0.92468 0.84271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.84 101.05 0.99 1.22 16 2 O -0.31 -4.09 10.51 -18.92 -0.20 -4.29 16 3 C 0.16 2.40 6.74 -38.82 -0.26 2.14 16 4 C -0.27 -3.75 9.11 -39.30 -0.36 -4.11 16 5 C 0.14 2.18 11.17 -17.59 -0.20 1.99 16 6 N -0.47 -9.31 9.22 -9.55 -0.09 -9.40 16 7 C 0.20 3.75 5.76 -82.63 -0.48 3.28 16 8 C -0.09 -1.70 4.71 -29.04 -0.14 -1.84 16 9 C 0.46 11.63 7.56 -10.99 -0.08 11.54 16 10 O -0.57 -16.55 15.05 5.55 0.08 -16.46 16 11 N -0.45 -11.92 3.01 -122.20 -0.37 -12.29 16 12 C 0.11 2.51 8.44 59.85 0.51 3.01 16 13 C -0.30 -8.62 9.24 -14.93 -0.14 -8.76 16 14 H 0.10 2.93 7.45 -52.49 -0.39 2.54 16 15 C 0.03 0.76 5.04 -17.47 -0.09 0.67 16 16 N -0.89 -24.06 10.83 55.50 0.60 -23.46 16 17 Si 0.92 21.27 29.57 -169.99 -5.03 16.25 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 C -0.20 -3.35 9.67 -39.30 -0.38 -3.74 16 22 H 0.06 0.44 7.71 -51.93 -0.40 0.03 16 23 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.39 7.71 -51.93 -0.40 -0.01 16 25 H 0.13 1.34 6.47 -52.49 -0.34 1.00 16 26 H 0.15 1.92 8.06 -52.48 -0.42 1.50 16 27 H 0.10 1.61 7.83 -51.93 -0.41 1.20 16 28 H 0.10 1.70 7.41 -51.92 -0.38 1.32 16 29 H 0.05 1.16 7.83 -51.93 -0.41 0.75 16 30 H 0.07 1.77 6.80 -51.93 -0.35 1.42 16 31 H 0.03 0.46 6.61 -51.93 -0.34 0.12 16 32 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 33 H 0.14 2.01 7.95 -52.49 -0.42 1.60 16 LS Contribution 285.07 15.07 4.30 4.30 Total: -1.00 -34.47 285.07 -5.14 -39.62 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -3.82 Total: 0.32 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -0.62 Total: 5.42 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.15 Total: -45.15 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.12 Total: -20.75 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -34.47 -5.14 -39.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346278194.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.721 kcal (2) G-P(sol) polarization free energy of solvation -34.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds