Wall clock time and date at job start Mon Mar 30 2020 18:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35737 * 116.99900 * 2 1 4 4 C 1.39286 * 120.84524 * 0.02562 * 3 2 1 5 5 C 1.37956 * 119.08697 * 179.97438 * 4 3 2 6 6 N 1.31974 * 120.82715 * 0.02562 * 5 4 3 7 7 C 1.31950 * 121.86305 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.58742 * 179.97438 * 7 6 5 9 9 C 1.50695 * 109.47515 * 305.00211 * 8 7 6 10 10 O 1.21294 * 119.99890 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00181 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00257 * 0.02562 * 11 9 8 13 13 C 1.37102 * 120.00292 * 180.02562 * 11 9 8 14 14 H 1.08001 * 119.99784 * 24.39456 * 13 11 9 15 15 C 1.38944 * 120.00345 * 204.39887 * 13 11 9 16 16 N 1.31413 * 119.99727 * 12.65541 * 15 13 11 17 17 Si 1.86800 * 120.00318 * 192.65387 * 15 13 11 18 18 H 1.48503 * 109.46966 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47391 * 119.99722 * 17 15 13 20 20 H 1.48504 * 109.47286 * 240.00187 * 17 15 13 21 21 C 1.37994 * 120.81910 * 0.27580 * 7 6 5 22 22 H 1.09004 * 109.47094 * 59.99711 * 1 2 3 23 23 H 1.08999 * 109.47005 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.46816 * 299.99934 * 1 2 3 25 25 H 1.07990 * 120.45717 * 0.02562 * 4 3 2 26 26 H 1.08004 * 119.58405 * 180.02562 * 5 4 3 27 27 H 1.08998 * 109.47262 * 184.99676 * 8 7 6 28 28 H 1.09008 * 109.46982 * 65.00312 * 8 7 6 29 29 H 1.08999 * 109.46943 * 85.85636 * 12 11 9 30 30 H 1.08995 * 109.47473 * 205.86376 * 12 11 9 31 31 H 1.09004 * 109.46983 * 325.86455 * 12 11 9 32 32 H 0.97009 * 119.99603 * 180.02562 * 16 15 13 33 33 H 1.08002 * 120.44844 * 179.70421 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3039 2.3886 0.0005 5 6 1.9676 3.5980 0.0011 6 7 3.2865 3.6457 0.0005 7 6 4.0231 2.5509 0.0000 8 6 5.5257 2.6651 -0.0011 9 6 5.9641 3.5157 -1.1653 10 8 5.1375 3.9837 -1.9196 11 7 7.2744 3.7574 -1.3677 12 6 8.2728 3.1927 -0.4563 13 6 7.6732 4.5317 -2.4265 14 1 6.9930 5.2536 -2.8539 15 6 8.9523 4.3877 -2.9497 16 7 9.6902 3.3559 -2.6066 17 14 9.6231 5.6609 -4.1407 18 1 8.6025 6.7164 -4.3635 19 1 10.8516 6.2716 -3.5725 20 1 9.9480 5.0065 -5.4336 21 6 3.4345 1.3028 -0.0057 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 0.2245 2.3566 0.0014 26 1 1.4008 4.5174 0.0019 27 1 5.9655 1.6719 -0.0909 28 1 5.8558 3.1257 0.9301 29 1 8.5297 2.1837 -0.7789 30 1 9.1669 3.8159 -0.4655 31 1 7.8643 3.1581 0.5537 32 1 10.5834 3.2556 -2.9716 33 1 4.0432 0.4107 -0.0109 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346278194.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:50 Heat of formation + Delta-G solvation = -48.171054 kcal Electronic energy + Delta-G solvation = -17803.832952 eV Core-core repulsion = 14829.775084 eV Total energy + Delta-G solvation = -2974.057868 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.64438 -40.25585 -39.07815 -36.57413 -33.97564 -33.33297 -32.42619 -29.78141 -28.32354 -27.73496 -26.09142 -24.42600 -23.05705 -20.77241 -18.85402 -18.79443 -18.06841 -17.71123 -16.78553 -16.66566 -16.42825 -16.24553 -15.81112 -15.52792 -14.87964 -14.65698 -14.36041 -13.92215 -13.72342 -13.27450 -13.12528 -12.98349 -12.86355 -12.62569 -12.42807 -12.26529 -12.11624 -12.08132 -10.97107 -10.44598 -10.28155 -9.93414 -9.81355 -9.59625 -8.30699 -5.94752 0.12779 0.43807 1.37337 1.41454 1.55655 2.11058 2.16069 2.31280 2.79925 3.12218 3.24250 3.39929 3.72099 3.96148 4.13687 4.18801 4.30075 4.37612 4.38857 4.50142 4.62288 4.70043 4.75576 4.84661 4.95356 5.07701 5.10293 5.41817 5.47958 5.57448 6.15291 6.26076 6.54876 7.21560 7.23492 7.52517 8.11427 8.72835 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.044530 B = 0.004666 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.634390 B = 5999.505428 C = 6190.436036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.326 6.326 3 C 0.159 3.841 4 C -0.259 4.259 5 C 0.123 3.877 6 N -0.518 5.518 7 C 0.169 3.831 8 C -0.076 4.076 9 C 0.449 3.551 10 O -0.618 6.618 11 N -0.469 5.469 12 C 0.120 3.880 13 C -0.341 4.341 14 H 0.065 0.935 15 C -0.003 4.003 16 N -0.897 5.897 17 Si 0.987 3.013 18 H -0.276 1.276 19 H -0.264 1.264 20 H -0.276 1.276 21 C -0.213 4.213 22 H 0.065 0.935 23 H 0.124 0.876 24 H 0.073 0.927 25 H 0.172 0.828 26 H 0.177 0.823 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.273 0.727 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.340 -6.784 8.882 17.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.237 6.237 3 C 0.105 3.895 4 C -0.279 4.279 5 C -0.035 4.035 6 N -0.231 5.231 7 C 0.033 3.967 8 C -0.116 4.116 9 C 0.238 3.762 10 O -0.504 6.504 11 N -0.189 5.189 12 C -0.023 4.023 13 C -0.469 4.469 14 H 0.083 0.917 15 C -0.204 4.204 16 N -0.537 5.537 17 Si 0.811 3.189 18 H -0.201 1.201 19 H -0.188 1.188 20 H -0.201 1.201 21 C -0.233 4.233 22 H 0.083 0.917 23 H 0.142 0.858 24 H 0.091 0.909 25 H 0.190 0.810 26 H 0.194 0.806 27 H 0.139 0.861 28 H 0.138 0.862 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.040 -6.065 8.486 16.698 hybrid contribution -0.035 -0.093 -0.815 0.821 sum -13.075 -6.158 7.671 16.362 Atomic orbital electron populations 1.23464 0.75665 1.06073 1.02710 1.86041 1.24152 1.25666 1.87883 1.19317 0.92106 0.85474 0.92555 1.22449 1.02807 0.92173 1.10520 1.23029 0.89472 0.98676 0.92274 1.67476 1.08324 1.32957 1.14337 1.20603 0.95515 0.88075 0.92556 1.20560 0.90364 1.02108 0.98579 1.20677 0.82571 0.84609 0.88364 1.90496 1.52792 1.56122 1.50957 1.43823 1.04923 1.45048 1.25131 1.21458 0.91751 0.98567 0.90545 1.19585 0.99114 1.16779 1.11417 0.91665 1.26040 0.96624 0.98577 0.99146 1.70066 1.11143 1.27462 1.44979 0.84973 0.78149 0.77994 0.77773 1.20117 1.18840 1.20140 1.21384 0.93247 0.99162 1.09538 0.91680 0.85755 0.90887 0.81041 0.80554 0.86057 0.86193 0.93637 0.92539 0.91262 0.91778 0.82910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.84 113.37 1.12 1.31 16 2 O -0.33 -7.62 10.51 -90.60 -0.95 -8.57 16 3 C 0.16 4.44 6.74 22.76 0.15 4.59 16 4 C -0.26 -6.45 9.11 22.46 0.20 -6.25 16 5 C 0.12 3.74 11.17 84.60 0.95 4.69 16 6 N -0.52 -20.60 9.22 -184.12 -1.70 -22.30 16 7 C 0.17 6.38 5.76 42.48 0.24 6.63 16 8 C -0.08 -2.88 4.71 29.10 0.14 -2.74 16 9 C 0.45 23.24 7.56 87.66 0.66 23.90 16 10 O -0.62 -37.35 15.05 -3.07 -0.05 -37.40 16 11 N -0.47 -25.22 3.01 -658.91 -1.98 -27.21 16 12 C 0.12 5.34 8.44 127.77 1.08 6.42 16 13 C -0.34 -20.23 9.24 84.04 0.78 -19.46 16 14 H 0.07 4.18 7.45 -2.91 -0.02 4.16 16 15 C 0.00 -0.14 5.04 84.92 0.43 0.29 16 16 N -0.90 -48.64 10.83 21.66 0.23 -48.41 16 17 Si 0.99 43.89 29.57 68.60 2.03 45.92 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 19 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 20 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 21 C -0.21 -6.79 9.67 22.45 0.22 -6.57 16 22 H 0.06 0.76 7.71 -2.38 -0.02 0.74 16 23 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.07 0.72 7.71 -2.39 -0.02 0.70 16 25 H 0.17 2.77 6.47 -2.92 -0.02 2.75 16 26 H 0.18 4.22 8.06 -2.91 -0.02 4.20 16 27 H 0.12 3.89 7.83 -2.39 -0.02 3.88 16 28 H 0.12 3.95 7.41 -2.38 -0.02 3.93 16 29 H 0.05 2.05 7.83 -2.39 -0.02 2.03 16 30 H 0.06 2.69 6.80 -2.39 -0.02 2.67 16 31 H 0.07 2.43 6.61 -2.38 -0.02 2.41 16 32 H 0.27 13.76 8.31 -92.70 -0.77 12.99 16 33 H 0.15 4.24 7.95 -2.91 -0.02 4.21 16 Total: -1.00 -77.44 285.07 4.67 -72.77 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 1.12 Total: 12.39 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 5.96 Total: 12.81 kcal Atomic # 7 Polarization: -94.47 SS G_CDS: -3.45 Total: -97.91 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -1.00 Total: -45.97 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -77.44 4.67 -72.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346278194.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.599 kcal (2) G-P(sol) polarization free energy of solvation -77.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds