Wall clock time and date at job start Mon Mar 30 2020 18:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34675 * 117.00110 * 2 1 4 4 O 1.21430 * 119.99729 * 0.02562 * 3 2 1 5 5 C 1.48064 * 120.00164 * 180.27543 * 3 2 1 6 6 C 1.39346 * 119.72824 * 179.72799 * 5 3 2 7 7 C 1.38591 * 119.05882 * 179.97438 * 6 5 3 8 8 C 1.38632 * 118.48554 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.31621 * 180.02562 * 8 7 6 10 10 N 1.46497 * 109.47434 * 90.00073 * 9 8 7 11 11 C 1.46499 * 120.00233 * 270.00049 * 10 9 8 12 12 C 1.36940 * 120.00259 * 89.99672 * 10 9 8 13 13 H 1.08005 * 119.99477 * 20.38636 * 12 10 9 14 14 C 1.38810 * 120.00313 * 200.39181 * 12 10 9 15 15 N 1.31615 * 119.99760 * 14.96780 * 14 12 10 16 16 Si 1.86798 * 120.00055 * 194.97099 * 14 12 10 17 17 H 1.48505 * 109.46929 * 84.99957 * 16 14 12 18 18 H 1.48500 * 109.47078 * 204.99882 * 16 14 12 19 19 H 1.48502 * 109.47161 * 325.00099 * 16 14 12 20 20 C 1.38575 * 119.35930 * 0.02562 * 8 7 6 21 21 N 1.31509 * 120.90883 * 359.74086 * 20 8 7 22 22 H 1.09005 * 109.47120 * 59.99944 * 1 2 3 23 23 H 1.09005 * 109.47106 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47011 * 299.99787 * 1 2 3 25 25 H 1.08000 * 120.47413 * 359.95558 * 6 5 3 26 26 H 1.07997 * 120.75783 * 180.02562 * 7 6 5 27 27 H 1.09005 * 109.47127 * 210.00149 * 9 8 7 28 28 H 1.09001 * 109.47285 * 329.99676 * 9 8 7 29 29 H 1.08998 * 109.47393 * 95.08898 * 11 10 9 30 30 H 1.08997 * 109.47722 * 215.09774 * 11 10 9 31 31 H 1.09005 * 109.46896 * 335.09390 * 11 10 9 32 32 H 0.97000 * 120.00154 * 180.02562 * 15 14 12 33 33 H 1.08003 * 119.54747 * 180.02562 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4021 2.2183 0.0005 5 6 3.5420 1.2775 -0.0062 6 6 4.1687 2.5220 -0.0119 7 6 5.5535 2.5784 -0.0171 8 6 6.2637 1.3878 -0.0158 9 6 7.7706 1.4010 -0.0207 10 7 8.2635 1.4094 1.3588 11 6 8.4988 2.6822 2.0449 12 6 8.5041 0.2274 2.0072 13 1 8.6542 -0.6790 1.4394 14 6 8.5551 0.1943 3.3939 15 7 8.0898 1.2071 4.0939 16 14 9.2841 -1.2877 4.2666 17 1 10.7582 -1.1326 4.3581 18 1 8.7112 -1.3888 5.6330 19 1 8.9625 -2.5198 3.5026 20 6 5.5745 0.1856 -0.0100 21 7 4.2597 0.1607 -0.0006 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.5837 3.4299 -0.0126 26 1 6.0676 3.5282 -0.0211 27 1 8.1401 0.5127 -0.5332 28 1 8.1245 2.2926 -0.5384 29 1 7.6203 2.9453 2.6340 30 1 9.3622 2.5860 2.7032 31 1 8.6891 3.4625 1.3079 32 1 8.1257 1.1842 5.0630 33 1 6.1248 -0.7437 -0.0086 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237450708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:27 Heat of formation + Delta-G solvation = -40.538685 kcal Electronic energy + Delta-G solvation = -17825.990719 eV Core-core repulsion = 14852.263815 eV Total energy + Delta-G solvation = -2973.726904 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.84658 -40.65002 -37.68508 -37.48374 -34.35305 -33.08305 -32.27188 -29.24588 -28.03247 -27.59775 -24.99865 -24.49626 -22.86469 -21.92290 -19.32628 -18.80892 -18.33199 -17.50200 -17.10933 -16.96846 -16.21871 -15.77313 -15.60215 -15.20149 -14.81800 -14.70273 -14.10174 -14.00457 -13.95590 -13.33840 -13.03316 -12.83373 -12.65589 -12.49481 -12.26554 -12.00302 -11.97556 -11.85163 -11.84602 -10.82490 -10.70770 -10.52071 -10.05439 -8.87250 -7.85964 -5.29674 -0.48902 0.30153 1.30663 1.48903 1.49940 1.56961 1.57579 2.50559 2.80830 3.17353 3.32193 3.80283 3.84011 3.95865 4.01111 4.09178 4.25620 4.31137 4.34310 4.62337 4.67735 4.85273 4.87268 4.96879 5.02848 5.16646 5.32465 5.37878 5.62432 5.67187 5.74495 6.29135 6.43544 6.88187 7.12037 7.83052 8.24158 9.16947 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.026079 B = 0.005667 C = 0.005134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.409121 B = 4939.449264 C = 5452.362198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.349 6.349 3 C 0.530 3.470 4 O -0.523 6.523 5 C 0.039 3.961 6 C -0.101 4.101 7 C -0.082 4.082 8 C -0.101 4.101 9 C 0.178 3.822 10 N -0.602 5.602 11 C 0.172 3.828 12 C -0.257 4.257 13 H 0.082 0.918 14 C -0.051 4.051 15 N -0.936 5.936 16 Si 0.963 3.037 17 H -0.283 1.283 18 H -0.303 1.303 19 H -0.267 1.267 20 C 0.097 3.903 21 N -0.457 5.457 22 H 0.070 0.930 23 H 0.133 0.867 24 H 0.064 0.936 25 H 0.159 0.841 26 H 0.164 0.836 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.000 1.000 30 H 0.019 0.981 31 H 0.042 0.958 32 H 0.246 0.754 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.871 0.783 -10.282 12.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.264 6.264 3 C 0.375 3.625 4 O -0.413 6.413 5 C -0.097 4.097 6 C -0.122 4.122 7 C -0.108 4.108 8 C -0.107 4.107 9 C 0.051 3.949 10 N -0.323 5.323 11 C 0.027 3.973 12 C -0.387 4.387 13 H 0.100 0.900 14 C -0.247 4.247 15 N -0.582 5.582 16 Si 0.792 3.208 17 H -0.210 1.210 18 H -0.230 1.230 19 H -0.191 1.191 20 C -0.064 4.064 21 N -0.168 5.168 22 H 0.089 0.911 23 H 0.151 0.849 24 H 0.083 0.917 25 H 0.177 0.823 26 H 0.181 0.819 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.019 0.981 30 H 0.038 0.962 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -8.550 0.294 -10.090 13.228 hybrid contribution 0.340 0.121 1.170 1.225 sum -8.209 0.416 -8.919 12.129 Atomic orbital electron populations 1.23673 0.74120 1.06013 1.02940 1.86682 1.25343 1.31379 1.83018 1.20908 0.88028 0.81730 0.71832 1.90781 1.66349 1.36588 1.47534 1.20057 0.90728 0.91053 1.07860 1.22165 0.95725 0.97789 0.96471 1.21733 0.92791 0.99664 0.96631 1.22602 1.01393 0.93778 0.92930 1.20240 0.85515 1.02850 0.86252 1.44416 1.72990 1.03088 1.11802 1.20639 0.97906 0.85089 0.93648 1.19638 1.40701 0.89092 0.89282 0.89988 1.25732 1.01141 1.00061 0.97731 1.70244 1.49357 1.33339 1.05242 0.85338 0.78102 0.80042 0.77347 1.20992 1.22986 1.19116 1.22845 0.88468 0.99070 0.96061 1.67519 1.09098 1.30686 1.09510 0.91079 0.84916 0.91707 0.82348 0.81890 0.90615 0.89526 0.98139 0.96249 0.93938 0.94430 0.81709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.71 16 2 O -0.35 -10.75 10.38 -55.84 -0.58 -11.32 16 3 C 0.53 18.03 7.95 70.43 0.56 18.59 16 4 O -0.52 -18.24 16.11 20.06 0.32 -17.92 16 5 C 0.04 1.38 6.75 41.88 0.28 1.67 16 6 C -0.10 -3.20 9.63 22.62 0.22 -2.98 16 7 C -0.08 -2.53 9.85 22.45 0.22 -2.31 16 8 C -0.10 -3.47 5.49 -19.69 -0.11 -3.58 16 9 C 0.18 6.06 5.85 85.63 0.50 6.57 16 10 N -0.60 -27.18 2.91 -731.31 -2.13 -29.31 16 11 C 0.17 7.79 9.02 127.77 1.15 8.95 16 12 C -0.26 -13.01 9.68 84.03 0.81 -12.20 16 13 H 0.08 3.94 7.86 -2.91 -0.02 3.92 16 14 C -0.05 -2.75 5.06 84.86 0.43 -2.32 16 15 N -0.94 -54.01 10.67 21.65 0.23 -53.78 16 16 Si 0.96 43.80 29.58 68.60 2.03 45.83 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 20 C 0.10 3.53 10.86 84.82 0.92 4.45 16 21 N -0.46 -17.29 10.12 -184.96 -1.87 -19.17 16 22 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 23 H 0.13 1.80 8.14 -2.38 -0.02 1.78 16 24 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.16 4.34 7.64 -2.91 -0.02 4.32 16 26 H 0.16 4.11 8.06 -2.91 -0.02 4.08 16 27 H 0.08 2.39 7.98 -2.38 -0.02 2.38 16 28 H 0.09 2.43 7.81 -2.39 -0.02 2.41 16 29 H 0.00 0.01 7.40 -2.39 -0.02 0.00 16 30 H 0.02 0.96 7.21 -2.39 -0.02 0.94 16 31 H 0.04 1.54 7.84 -2.38 -0.02 1.52 16 32 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 33 H 0.17 5.64 8.06 -2.91 -0.02 5.62 16 Total: -1.00 -65.90 294.38 5.30 -60.60 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 1.11 Total: 6.55 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: 6.19 Total: 18.53 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -3.77 Total: -102.25 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.26 Total: -29.25 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -65.90 5.30 -60.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237450708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.057 kcal (2) G-P(sol) polarization free energy of solvation -65.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds