Wall clock time and date at job start Mon Mar 30 2020 18:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46974 * 2 1 4 4 C 1.36958 * 119.99726 * 264.66525 * 3 2 1 5 5 H 1.07999 * 120.00042 * 198.86827 * 4 3 2 6 6 C 1.38993 * 120.00003 * 18.87509 * 4 3 2 7 7 N 1.31398 * 119.99901 * 24.72819 * 6 4 3 8 8 Si 1.86799 * 119.99708 * 204.72591 * 6 4 3 9 9 H 1.48498 * 109.47478 * 60.00253 * 8 6 4 10 10 H 1.48505 * 109.46866 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47227 * 299.99750 * 8 6 4 12 12 C 1.34769 * 120.00434 * 84.67244 * 3 2 1 13 13 O 1.21626 * 120.00454 * 184.04313 * 12 3 2 14 14 C 1.47441 * 119.99649 * 4.03731 * 12 3 2 15 15 C 1.36673 * 125.77656 * 174.06305 * 14 12 3 16 16 N 1.34832 * 106.82460 * 180.02562 * 15 14 12 17 17 C 1.46501 * 126.59163 * 179.97438 * 16 15 14 18 18 C 1.53001 * 117.50138 * 343.62978 * 17 16 15 19 19 C 1.53001 * 117.50208 * 275.00336 * 17 16 15 20 20 N 1.40210 * 106.81942 * 0.23127 * 16 15 14 21 21 N 1.28759 * 108.37925 * 359.61359 * 20 16 15 22 22 H 1.08998 * 109.47139 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46902 * 300.00315 * 1 2 3 24 24 H 1.09004 * 109.46969 * 60.00018 * 1 2 3 25 25 H 1.09003 * 109.47348 * 239.99979 * 2 1 3 26 26 H 1.08994 * 109.47485 * 119.99875 * 2 1 3 27 27 H 0.97002 * 120.00104 * 179.97438 * 7 6 4 28 28 H 1.08002 * 126.58914 * 0.03539 * 15 14 12 29 29 H 1.09008 * 115.55042 * 129.33834 * 17 16 15 30 30 H 1.09002 * 117.49565 * 359.97438 * 18 17 16 31 31 H 1.08998 * 117.50269 * 145.01673 * 18 17 16 32 32 H 1.09000 * 117.50272 * 214.97737 * 19 17 16 33 33 H 1.08999 * 117.49323 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3505 1.9900 -1.1810 5 1 2.9821 2.8661 -1.1779 6 6 1.8747 1.4806 -2.3834 7 7 0.7708 0.7680 -2.4041 8 14 2.8044 1.8088 -3.9700 9 1 4.1774 1.2532 -3.8633 10 1 2.0946 1.1617 -5.1026 11 1 2.8799 3.2730 -4.2056 12 6 2.1408 2.0527 1.1620 13 8 2.4756 3.2220 1.1565 14 6 1.8687 1.3699 2.4402 15 6 2.0646 1.8978 3.6856 16 7 1.6942 0.9524 4.5728 17 6 1.7287 1.0639 6.0331 18 6 2.5702 2.1905 6.6361 19 6 3.0490 0.7407 6.7355 20 7 1.2755 -0.1601 3.8292 21 7 1.3868 0.1227 2.5779 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 0.4385 0.4128 -3.2433 28 1 2.4431 2.8829 3.9150 29 1 0.8060 0.7940 6.5471 30 1 3.0986 2.8485 5.9461 31 1 2.2012 2.6622 7.5468 32 1 2.9950 0.2587 7.7116 33 1 3.8918 0.4447 6.1109 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599154803.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:23 Heat of formation + Delta-G solvation = 119.715456 kcal Electronic energy + Delta-G solvation = -18365.607343 eV Core-core repulsion = 15431.122331 eV Total energy + Delta-G solvation = -2934.485012 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.67511 -38.28508 -37.47144 -34.98453 -32.37552 -31.57613 -30.14007 -29.16933 -25.42327 -24.06315 -23.10207 -22.39662 -21.66355 -20.76065 -19.44482 -17.45358 -16.60945 -16.00518 -15.67658 -14.85259 -14.69561 -14.43670 -13.84437 -13.43110 -13.27260 -12.70342 -12.64733 -11.98350 -11.89960 -11.77196 -11.45202 -11.24167 -11.02433 -10.94082 -10.64697 -10.48314 -10.32485 -10.05800 -9.81255 -9.28670 -8.88893 -8.63379 -8.45358 -7.60588 -6.25078 -3.78967 1.58896 2.26766 2.52275 3.21254 3.24009 3.27170 3.31633 4.10780 4.17560 4.32855 4.37096 4.53056 4.82579 4.87459 5.18345 5.19213 5.27131 5.45976 5.49416 5.64448 5.73475 5.81731 6.32059 6.67816 6.81041 6.92987 7.00775 7.21994 7.43944 7.48725 8.11080 8.14343 8.48597 8.67032 9.20938 9.45170 10.04313 10.65091 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.044654 B = 0.005716 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.898234 B = 4897.661499 C = 5306.584265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.122 3.878 3 N -0.411 5.411 4 C -0.309 4.309 5 H 0.103 0.897 6 C 0.036 3.964 7 N -0.849 5.849 8 Si 0.923 3.077 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.272 1.272 12 C 0.506 3.494 13 O -0.597 6.597 14 C -0.055 4.055 15 C 0.061 3.939 16 N -0.346 5.346 17 C 0.074 3.926 18 C -0.169 4.169 19 C -0.171 4.171 20 N -0.087 5.087 21 N -0.201 5.201 22 H 0.029 0.971 23 H 0.020 0.980 24 H 0.112 0.888 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.269 0.731 28 H 0.194 0.806 29 H 0.145 0.855 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.984 -1.286 14.414 14.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.002 4.002 3 N -0.126 5.126 4 C -0.437 4.437 5 H 0.121 0.879 6 C -0.169 4.169 7 N -0.487 5.487 8 Si 0.749 3.251 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.197 1.197 12 C 0.293 3.707 13 O -0.483 6.483 14 C -0.194 4.194 15 C -0.094 4.094 16 N -0.132 5.132 17 C -0.030 4.030 18 C -0.208 4.208 19 C -0.210 4.210 20 N -0.065 5.065 21 N -0.074 5.074 22 H 0.048 0.952 23 H 0.039 0.961 24 H 0.130 0.870 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.211 0.789 29 H 0.163 0.837 30 H 0.127 0.873 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.453 -2.286 14.298 14.553 hybrid contribution 0.591 0.962 -0.611 1.283 sum 2.044 -1.325 13.687 13.902 Atomic orbital electron populations 1.22335 0.96114 0.99643 1.03012 1.21540 0.95473 0.82556 1.00633 1.43691 1.52799 1.11403 1.04722 1.19697 1.28326 1.13720 0.81916 0.87890 1.25355 0.94923 0.97023 0.99590 1.69963 1.16770 1.34573 1.27346 0.86059 0.79766 0.78899 0.80374 1.19864 1.20918 1.19717 1.16532 0.86836 0.85686 0.81677 1.90603 1.55749 1.15650 1.86346 1.22031 1.09213 0.92230 0.95909 1.23101 1.00852 0.96605 0.88855 1.49707 1.45496 1.11914 1.06095 1.21863 0.98073 1.07109 0.75908 1.23480 1.01810 0.92218 1.03257 1.23474 0.96898 0.98071 1.02515 1.81943 1.21235 1.06361 0.96948 1.74909 1.10919 1.13145 1.08404 0.95181 0.96058 0.87012 0.91215 0.91252 0.92025 0.78911 0.83732 0.87299 0.86464 0.86844 0.87771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.28 37.16 0.34 -3.34 16 2 C 0.12 3.02 4.88 -4.04 -0.02 3.00 16 3 N -0.41 -11.17 2.62 -116.02 -0.30 -11.47 16 4 C -0.31 -8.71 9.25 -14.98 -0.14 -8.85 16 5 H 0.10 3.00 7.46 -52.49 -0.39 2.61 16 6 C 0.04 0.95 4.76 -17.46 -0.08 0.87 16 7 N -0.85 -22.35 8.54 55.50 0.47 -21.88 16 8 Si 0.92 20.43 29.62 -169.99 -5.03 15.40 16 9 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 12 C 0.51 13.34 7.58 -12.52 -0.09 13.24 16 13 O -0.60 -17.01 16.55 5.25 0.09 -16.93 16 14 C -0.05 -1.22 6.59 -83.55 -0.55 -1.77 16 15 C 0.06 1.07 10.64 -16.80 -0.18 0.89 16 16 N -0.35 -5.38 3.96 -54.53 -0.22 -5.59 16 17 C 0.07 0.75 7.16 -67.93 -0.49 0.27 16 18 C -0.17 -1.24 10.00 -26.73 -0.27 -1.50 16 19 C -0.17 -1.35 10.46 -26.73 -0.28 -1.63 16 20 N -0.09 -1.65 13.78 60.35 0.83 -0.81 16 21 N -0.20 -4.34 7.65 32.84 0.25 -4.09 16 22 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.02 0.51 7.22 -51.93 -0.37 0.13 16 24 H 0.11 2.95 5.29 -51.93 -0.27 2.68 16 25 H 0.07 1.79 6.68 -51.93 -0.35 1.44 16 26 H 0.07 1.65 5.19 -51.93 -0.27 1.38 16 27 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 28 H 0.19 2.84 7.32 -52.49 -0.38 2.46 16 29 H 0.15 1.20 8.14 -51.92 -0.42 0.78 16 30 H 0.11 0.86 7.08 -51.93 -0.37 0.49 16 31 H 0.12 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 279.90 15.07 4.22 4.22 Total: -1.00 -32.43 279.90 -5.11 -37.54 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -3.66 Total: 2.45 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -1.75 Total: 1.17 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 1.04 Total: -43.85 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: 0.09 Total: -16.93 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.43 -5.11 -37.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599154803.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.252 kcal (2) G-P(sol) polarization free energy of solvation -32.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds