Wall clock time and date at job start Mon Mar 30 2020 18:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46974 * 2 1 4 4 C 1.36958 * 119.99726 * 264.66525 * 3 2 1 5 5 H 1.07999 * 120.00042 * 198.86827 * 4 3 2 6 6 C 1.38993 * 120.00003 * 18.87509 * 4 3 2 7 7 N 1.31398 * 119.99901 * 24.72819 * 6 4 3 8 8 Si 1.86799 * 119.99708 * 204.72591 * 6 4 3 9 9 H 1.48498 * 109.47478 * 60.00253 * 8 6 4 10 10 H 1.48505 * 109.46866 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47227 * 299.99750 * 8 6 4 12 12 C 1.34769 * 120.00434 * 84.67244 * 3 2 1 13 13 O 1.21626 * 120.00454 * 184.04313 * 12 3 2 14 14 C 1.47441 * 119.99649 * 4.03731 * 12 3 2 15 15 C 1.36673 * 125.77656 * 174.06305 * 14 12 3 16 16 N 1.34832 * 106.82460 * 180.02562 * 15 14 12 17 17 C 1.46501 * 126.59163 * 179.97438 * 16 15 14 18 18 C 1.53001 * 117.50138 * 343.62978 * 17 16 15 19 19 C 1.53001 * 117.50208 * 275.00336 * 17 16 15 20 20 N 1.40210 * 106.81942 * 0.23127 * 16 15 14 21 21 N 1.28759 * 108.37925 * 359.61359 * 20 16 15 22 22 H 1.08998 * 109.47139 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46902 * 300.00315 * 1 2 3 24 24 H 1.09004 * 109.46969 * 60.00018 * 1 2 3 25 25 H 1.09003 * 109.47348 * 239.99979 * 2 1 3 26 26 H 1.08994 * 109.47485 * 119.99875 * 2 1 3 27 27 H 0.97002 * 120.00104 * 179.97438 * 7 6 4 28 28 H 1.08002 * 126.58914 * 0.03539 * 15 14 12 29 29 H 1.09008 * 115.55042 * 129.33834 * 17 16 15 30 30 H 1.09002 * 117.49565 * 359.97438 * 18 17 16 31 31 H 1.08998 * 117.50269 * 145.01673 * 18 17 16 32 32 H 1.09000 * 117.50272 * 214.97737 * 19 17 16 33 33 H 1.08999 * 117.49323 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3505 1.9900 -1.1810 5 1 2.9821 2.8661 -1.1779 6 6 1.8747 1.4806 -2.3834 7 7 0.7708 0.7680 -2.4041 8 14 2.8044 1.8088 -3.9700 9 1 4.1774 1.2532 -3.8633 10 1 2.0946 1.1617 -5.1026 11 1 2.8799 3.2730 -4.2056 12 6 2.1408 2.0527 1.1620 13 8 2.4756 3.2220 1.1565 14 6 1.8687 1.3699 2.4402 15 6 2.0646 1.8978 3.6856 16 7 1.6942 0.9524 4.5728 17 6 1.7287 1.0639 6.0331 18 6 2.5702 2.1905 6.6361 19 6 3.0490 0.7407 6.7355 20 7 1.2755 -0.1601 3.8292 21 7 1.3868 0.1227 2.5779 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 0.4385 0.4128 -3.2433 28 1 2.4431 2.8829 3.9150 29 1 0.8060 0.7940 6.5471 30 1 3.0986 2.8485 5.9461 31 1 2.2012 2.6622 7.5468 32 1 2.9950 0.2587 7.7116 33 1 3.8918 0.4447 6.1109 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599154803.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:22 Heat of formation + Delta-G solvation = 98.141111 kcal Electronic energy + Delta-G solvation = -18366.542876 eV Core-core repulsion = 15431.122331 eV Total energy + Delta-G solvation = -2935.420546 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.14541 -40.15731 -38.41863 -37.03337 -34.03028 -33.25009 -31.74867 -31.14237 -27.29716 -25.37138 -24.48492 -23.77655 -23.20417 -21.94545 -21.09306 -18.97836 -18.46734 -17.47079 -17.07234 -16.56208 -16.17773 -16.00674 -15.46775 -15.24247 -14.72036 -14.58016 -13.99790 -13.80976 -13.26065 -13.13641 -12.80736 -12.68413 -12.54860 -12.43889 -12.35259 -12.09184 -12.05721 -11.62159 -11.22925 -10.94635 -10.86131 -10.52837 -10.14606 -9.64464 -8.25342 -5.90751 0.20104 0.82231 1.10513 1.45070 1.48846 1.57204 2.27715 2.43084 2.49618 2.99721 3.14386 3.33221 3.50808 3.65504 3.86358 3.90767 4.11357 4.33836 4.48034 4.67127 4.68535 4.83345 4.93442 5.01432 5.05353 5.09110 5.28870 5.40992 5.44126 5.61222 6.03530 6.11097 6.54945 7.02246 7.16913 7.42915 8.01177 8.64114 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.044654 B = 0.005716 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.898234 B = 4897.661499 C = 5306.584265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.131 3.869 3 N -0.426 5.426 4 C -0.355 4.355 5 H 0.080 0.920 6 C 0.007 3.993 7 N -0.862 5.862 8 Si 0.992 3.008 9 H -0.269 1.269 10 H -0.269 1.269 11 H -0.273 1.273 12 C 0.498 3.502 13 O -0.631 6.631 14 C -0.095 4.095 15 C 0.086 3.914 16 N -0.323 5.323 17 C 0.034 3.966 18 C -0.148 4.148 19 C -0.160 4.160 20 N -0.096 5.096 21 N -0.223 5.223 22 H 0.049 0.951 23 H 0.012 0.988 24 H 0.091 0.909 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.276 0.724 28 H 0.222 0.778 29 H 0.167 0.833 30 H 0.104 0.896 31 H 0.151 0.849 32 H 0.144 0.856 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.206 -1.480 16.245 16.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.007 3.993 3 N -0.141 5.141 4 C -0.482 4.482 5 H 0.098 0.902 6 C -0.198 4.198 7 N -0.499 5.499 8 Si 0.814 3.186 9 H -0.194 1.194 10 H -0.193 1.193 11 H -0.198 1.198 12 C 0.287 3.713 13 O -0.520 6.520 14 C -0.234 4.234 15 C -0.071 4.071 16 N -0.109 5.109 17 C -0.067 4.067 18 C -0.186 4.186 19 C -0.199 4.199 20 N -0.074 5.074 21 N -0.096 5.096 22 H 0.068 0.932 23 H 0.031 0.969 24 H 0.109 0.891 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.239 0.761 29 H 0.184 0.816 30 H 0.122 0.878 31 H 0.169 0.831 32 H 0.162 0.838 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.653 -2.523 16.170 16.449 hybrid contribution 0.507 1.032 -0.954 1.494 sum 2.160 -1.491 15.215 15.440 Atomic orbital electron populations 1.22146 0.95628 1.00416 1.01441 1.21498 0.95718 0.81696 1.00357 1.43884 1.53265 1.12102 1.04887 1.19692 1.30305 1.14752 0.83486 0.90171 1.26158 0.95206 0.96329 1.02067 1.70049 1.16984 1.34288 1.28536 0.85042 0.78507 0.78641 0.76370 1.19413 1.19345 1.19795 1.17083 0.85726 0.85591 0.82920 1.90542 1.57071 1.17101 1.87283 1.21614 1.12801 0.93433 0.95583 1.23389 0.98612 0.97371 0.87689 1.50026 1.42697 1.10070 1.08073 1.22614 1.00513 1.10955 0.72645 1.23690 0.99546 0.91645 1.03695 1.23590 0.94340 0.98967 1.02954 1.81812 1.21636 1.07607 0.96370 1.74799 1.11727 1.13181 1.09868 0.93170 0.96853 0.89082 0.92567 0.90198 0.91328 0.76136 0.81565 0.87759 0.83078 0.83844 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.77 9.28 71.98 0.67 -6.11 16 2 C 0.13 6.66 4.88 86.38 0.42 7.08 16 3 N -0.43 -24.06 2.62 -639.23 -1.68 -25.73 16 4 C -0.35 -20.83 9.25 84.07 0.78 -20.06 16 5 H 0.08 4.94 7.46 -2.91 -0.02 4.92 16 6 C 0.01 0.36 4.76 84.94 0.40 0.76 16 7 N -0.86 -45.89 8.54 21.67 0.18 -45.70 16 8 Si 0.99 42.27 29.62 68.60 2.03 44.30 16 9 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 10 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 12 C 0.50 27.22 7.58 86.67 0.66 27.87 16 13 O -0.63 -37.30 16.55 -4.11 -0.07 -37.37 16 14 C -0.09 -4.25 6.59 40.81 0.27 -3.98 16 15 C 0.09 2.94 10.64 83.87 0.89 3.83 16 16 N -0.32 -9.46 3.96 -326.44 -1.29 -10.75 16 17 C 0.03 0.57 7.16 44.99 0.32 0.90 16 18 C -0.15 -1.53 10.00 30.60 0.31 -1.23 16 19 C -0.16 -1.95 10.46 30.60 0.32 -1.63 16 20 N -0.10 -3.55 13.78 37.02 0.51 -3.04 16 21 N -0.22 -9.69 7.65 -50.00 -0.38 -10.07 16 22 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 23 H 0.01 0.63 7.22 -2.39 -0.02 0.61 16 24 H 0.09 4.90 5.29 -2.38 -0.01 4.89 16 25 H 0.06 2.95 6.68 -2.39 -0.02 2.94 16 26 H 0.08 3.90 5.19 -2.39 -0.01 3.88 16 27 H 0.28 13.62 8.31 -92.71 -0.77 12.85 16 28 H 0.22 6.09 7.32 -2.91 -0.02 6.07 16 29 H 0.17 2.13 8.14 -2.38 -0.02 2.12 16 30 H 0.10 1.25 7.08 -2.39 -0.02 1.24 16 31 H 0.15 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -73.30 279.90 5.48 -67.82 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 1.14 Total: 13.10 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 5.04 Total: 7.45 kcal Atomic # 7 Polarization: -92.64 SS G_CDS: -2.66 Total: -95.30 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -0.07 Total: -37.37 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -73.30 5.48 -67.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599154803.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.958 kcal (2) G-P(sol) polarization free energy of solvation -73.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds