Wall clock time and date at job start Mon Mar 30 2020 18:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47058 * 2 1 4 4 C 1.50696 * 109.46920 * 240.00333 * 2 1 3 5 5 H 1.08002 * 120.00157 * 239.99968 * 4 2 1 6 6 C 1.37881 * 120.00447 * 60.00039 * 4 2 1 7 7 N 1.31510 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47150 * 60.00100 * 8 6 4 10 10 H 1.48498 * 109.47193 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47405 * 300.00440 * 8 6 4 12 12 N 1.46499 * 109.47014 * 120.00332 * 2 1 3 13 13 C 1.34777 * 119.99665 * 275.27733 * 12 2 1 14 14 O 1.21593 * 120.00264 * 359.72086 * 13 12 2 15 15 C 1.47519 * 119.99665 * 179.72393 * 13 12 2 16 16 C 1.36605 * 125.77070 * 179.97438 * 15 13 12 17 17 N 1.34820 * 106.83810 * 179.97438 * 16 15 13 18 18 C 1.46497 * 126.58930 * 180.02562 * 17 16 15 19 19 C 1.52998 * 117.50004 * 343.61613 * 18 17 16 20 20 C 1.52996 * 60.00195 * 252.51154 * 19 18 17 21 21 N 1.40212 * 106.81016 * 359.97438 * 17 16 15 22 22 N 1.28753 * 108.36958 * 359.74649 * 21 17 16 23 23 H 1.08995 * 109.47066 * 300.00185 * 1 2 3 24 24 H 1.09005 * 109.46722 * 59.99817 * 1 2 3 25 25 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 26 26 H 0.97000 * 120.00295 * 179.97438 * 7 6 4 27 27 H 0.97001 * 119.99790 * 94.99446 * 12 2 1 28 28 H 1.07993 * 126.57479 * 359.97438 * 16 15 13 29 29 H 1.09008 * 115.54967 * 129.32766 * 18 17 16 30 30 H 1.09001 * 117.50057 * 0.02562 * 19 18 17 31 31 H 1.09005 * 117.49704 * 145.02328 * 19 18 17 32 32 H 1.08995 * 117.50065 * 252.51190 * 20 19 18 33 33 H 1.09003 * 117.51977 * 107.47899 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.8280 -2.5197 -4.0082 10 1 1.8279 -0.4190 -5.2204 11 1 3.8075 -1.1189 -4.0078 12 7 2.0184 -0.6907 1.1961 13 6 2.1418 -0.0197 2.3585 14 8 1.8526 1.1601 2.4131 15 6 2.6277 -0.7167 3.5644 16 6 2.7976 -0.1544 4.7977 17 7 3.2538 -1.1279 5.6112 18 6 3.5812 -0.9956 7.0330 19 6 3.7664 0.4185 7.5868 20 6 4.9806 -0.4917 7.3918 21 7 3.3536 -2.2913 4.8351 22 7 2.9716 -2.0140 3.6372 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7088 1.1614 -3.4844 27 1 2.2490 -1.6319 1.1525 28 1 2.6036 0.8728 5.0689 29 1 3.1301 -1.7389 7.6905 30 1 3.6442 1.2506 6.8933 31 1 3.4369 0.6060 8.6088 32 1 5.4499 -0.9031 8.2854 33 1 5.6578 -0.2589 6.5700 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599222483.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:25 Heat of formation + Delta-G solvation = 86.065045 kcal Electronic energy + Delta-G solvation = -17572.754020 eV Core-core repulsion = 14636.809817 eV Total energy + Delta-G solvation = -2935.944203 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.10092 -38.61926 -37.80278 -34.76846 -32.73534 -32.16453 -30.78932 -28.69105 -25.21403 -24.70344 -23.60015 -22.85568 -21.16806 -20.86753 -19.45120 -18.26724 -16.74771 -16.28021 -15.55291 -15.34626 -15.18188 -14.59930 -14.24818 -13.80999 -13.47724 -13.06677 -12.38423 -12.20772 -12.16558 -11.76878 -11.62454 -11.54669 -11.06196 -10.90800 -10.86613 -10.70276 -10.29079 -10.17192 -10.15600 -9.28605 -9.11661 -8.99000 -8.49750 -7.86361 -6.06890 -4.15428 1.19288 1.88905 2.04077 2.97597 3.31705 3.35830 3.38316 3.87747 3.94459 4.04937 4.15569 4.31030 4.42320 4.43508 4.93609 4.99539 5.09147 5.25013 5.26748 5.31271 5.42862 5.47823 6.06036 6.40318 6.88083 7.02159 7.19203 7.47011 7.60235 7.74971 7.94474 8.09051 8.19269 8.72086 8.81866 9.12148 9.51460 10.99269 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.046043 B = 0.004340 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.979231 B = 6450.596875 C = 6735.191091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.051 0.949 4 C -0.533 4.533 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.688 5.688 13 C 0.586 3.414 14 O -0.555 6.555 15 C -0.084 4.084 16 C 0.082 3.918 17 N -0.342 5.342 18 C 0.069 3.931 19 C -0.168 4.168 20 C -0.169 4.169 21 N -0.069 5.069 22 N -0.203 5.203 23 H 0.015 0.985 24 H 0.091 0.909 25 H 0.028 0.972 26 H 0.264 0.736 27 H 0.397 0.603 28 H 0.201 0.799 29 H 0.149 0.851 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.077 -1.780 19.654 20.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.571 4.571 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.335 5.335 13 C 0.368 3.632 14 O -0.434 6.434 15 C -0.224 4.224 16 C -0.073 4.073 17 N -0.127 5.127 18 C -0.034 4.034 19 C -0.206 4.206 20 C -0.207 4.207 21 N -0.048 5.048 22 N -0.077 5.077 23 H 0.034 0.966 24 H 0.110 0.890 25 H 0.047 0.953 26 H 0.074 0.926 27 H 0.231 0.769 28 H 0.218 0.782 29 H 0.167 0.833 30 H 0.128 0.872 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.142 -2.311 19.488 20.287 hybrid contribution 0.167 0.099 -0.671 0.699 sum 5.309 -2.211 18.816 19.676 Atomic orbital electron populations 1.22089 0.98258 0.99311 1.00963 1.18826 0.91176 0.94024 0.79751 0.93107 1.21203 1.32429 1.13280 0.90229 0.91933 1.24872 0.94803 0.94963 0.99009 1.69891 1.35924 1.22502 1.23950 0.86488 0.79189 0.79631 0.81679 1.20103 1.21178 1.20167 1.46404 1.63257 1.14148 1.09659 1.16822 0.78605 0.85886 0.81844 1.90753 1.52719 1.15010 1.84869 1.21944 1.12881 0.91028 0.96555 1.23260 0.97304 0.96701 0.90066 1.49804 1.44899 1.08751 1.09216 1.21982 1.02620 1.01117 0.77728 1.23517 1.01360 0.92111 1.03594 1.23505 0.90797 1.02020 1.04385 1.81987 1.22212 1.04368 0.96218 1.74662 1.08310 1.13412 1.11289 0.96564 0.89005 0.95323 0.92558 0.76901 0.78246 0.83329 0.87197 0.86192 0.86569 0.87614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.26 37.16 0.34 -3.43 16 2 C 0.26 6.96 2.56 -69.08 -0.18 6.78 16 3 H 0.05 1.51 7.58 -51.93 -0.39 1.11 16 4 C -0.53 -14.62 8.73 -34.44 -0.30 -14.92 16 5 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 7 N -0.89 -25.24 11.32 55.43 0.63 -24.62 16 8 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.69 -15.73 5.07 -55.98 -0.28 -16.01 16 13 C 0.59 12.69 7.78 -12.48 -0.10 12.59 16 14 O -0.55 -13.33 16.53 5.28 0.09 -13.24 16 15 C -0.08 -1.51 6.99 -83.55 -0.58 -2.10 16 16 C 0.08 1.14 10.63 -16.83 -0.18 0.96 16 17 N -0.34 -4.26 3.96 -54.56 -0.22 -4.47 16 18 C 0.07 0.52 7.16 -67.93 -0.49 0.04 16 19 C -0.17 -0.84 10.00 -26.73 -0.27 -1.11 16 20 C -0.17 -0.98 10.46 -26.73 -0.28 -1.26 16 21 N -0.07 -1.09 13.78 60.35 0.83 -0.26 16 22 N -0.20 -3.65 12.04 32.85 0.40 -3.26 16 23 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.40 8.48 8.23 -40.82 -0.34 8.15 16 28 H 0.20 2.17 7.32 -52.49 -0.38 1.79 16 29 H 0.15 0.86 8.14 -51.92 -0.42 0.44 16 30 H 0.11 0.59 7.08 -51.93 -0.37 0.23 16 31 H 0.12 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.12 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 293.59 15.07 4.42 4.42 Total: -1.00 -32.62 293.59 -5.15 -37.77 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -3.87 Total: 4.27 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -2.12 Total: -0.72 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 1.35 Total: -48.61 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.09 Total: -13.24 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.62 -5.15 -37.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599222483.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.839 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds