Wall clock time and date at job start Mon Mar 30 2020 18:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47336 * 2 1 4 4 C 1.50698 * 109.47076 * 119.99692 * 2 1 3 5 5 H 1.08001 * 120.00173 * 119.99998 * 4 2 1 6 6 C 1.37885 * 119.99954 * 300.00019 * 4 2 1 7 7 N 1.31506 * 120.00188 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99811 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47107 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47178 * 120.00233 * 8 6 4 11 11 H 1.48501 * 109.47291 * 240.00080 * 8 6 4 12 12 N 1.46499 * 109.47350 * 240.00201 * 2 1 3 13 13 C 1.34771 * 120.00232 * 85.00028 * 12 2 1 14 14 O 1.21593 * 120.00343 * 359.97438 * 13 12 2 15 15 C 1.47527 * 119.99610 * 180.02562 * 13 12 2 16 16 C 1.36597 * 125.76547 * 179.97438 * 15 13 12 17 17 N 1.34820 * 106.83727 * 179.71308 * 16 15 13 18 18 C 1.46496 * 126.59512 * 180.28348 * 17 16 15 19 19 C 1.53004 * 117.49978 * 343.62996 * 18 17 16 20 20 C 1.52998 * 117.50144 * 275.00550 * 18 17 16 21 21 N 1.40214 * 106.80954 * 0.26969 * 17 16 15 22 22 N 1.28759 * 108.36470 * 359.97438 * 21 17 16 23 23 H 1.08993 * 109.47174 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47361 * 300.00452 * 1 2 3 25 25 H 1.09004 * 109.46997 * 60.00233 * 1 2 3 26 26 H 0.96998 * 120.00508 * 180.02562 * 7 6 4 27 27 H 0.97003 * 119.99564 * 265.00284 * 12 2 1 28 28 H 1.08002 * 126.58530 * 359.97438 * 16 15 13 29 29 H 1.08998 * 115.54797 * 129.33021 * 18 17 16 30 30 H 1.08997 * 117.49524 * 359.97438 * 19 18 17 31 31 H 1.08997 * 117.49969 * 145.01755 * 19 18 17 32 32 H 1.09005 * 117.50005 * 214.97765 * 20 18 17 33 33 H 1.08999 * 117.50215 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3212 -1.1201 4.0080 9 1 3.1463 -2.2868 3.6039 10 1 3.1464 -0.1871 4.8166 11 1 1.1659 -1.5864 4.8162 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8575 1.1614 -2.4119 15 6 2.6384 -0.7139 -3.5617 16 6 2.8130 -0.1503 -4.7937 17 7 3.2798 -1.1211 -5.6045 18 6 3.6214 -0.9852 -7.0226 19 6 3.0916 0.2449 -7.7623 20 6 2.4881 -1.1334 -8.0397 21 7 3.3756 -2.2856 -4.8295 22 7 2.9871 -2.0098 -3.6333 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7086 1.1614 3.4844 27 1 2.2490 -1.6318 -1.1526 28 1 2.6188 0.8768 -5.0650 29 1 4.6051 -1.3588 -7.3070 30 1 2.4884 0.9528 -7.1938 31 1 3.7267 0.6808 -8.5334 32 1 2.7263 -1.6043 -8.9935 33 1 1.4884 -1.3325 -7.6539 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599222484.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:27 Heat of formation + Delta-G solvation = 86.019002 kcal Electronic energy + Delta-G solvation = -17572.998542 eV Core-core repulsion = 14637.052343 eV Total energy + Delta-G solvation = -2935.946200 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.10192 -38.62031 -37.80432 -34.77061 -32.73641 -32.16582 -30.78998 -28.69477 -25.21788 -24.70492 -23.60104 -22.85767 -21.16958 -20.86933 -19.45150 -18.26818 -16.76142 -16.26816 -15.54800 -15.29011 -15.27699 -14.57803 -14.21950 -13.81233 -13.55287 -13.00011 -12.37877 -12.22199 -12.18482 -11.77558 -11.63007 -11.54559 -11.05553 -10.91933 -10.87716 -10.70008 -10.26281 -10.18315 -10.15437 -9.28848 -9.11568 -8.97668 -8.50628 -7.86517 -6.07380 -4.15664 1.19256 1.88876 2.04065 2.97369 3.28926 3.36513 3.40776 3.87334 3.94709 4.04707 4.15457 4.30840 4.42413 4.43315 4.93499 4.99336 5.09090 5.24735 5.26361 5.31230 5.42624 5.47543 6.05976 6.40251 6.87614 7.01837 7.19077 7.46783 7.60206 7.74966 7.94379 8.08981 8.18952 8.72021 8.82055 9.12152 9.51354 10.98870 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.049725 B = 0.004322 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.964642 B = 6477.577083 C = 6808.651202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.051 0.949 4 C -0.531 4.531 5 H 0.064 0.936 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.688 5.688 13 C 0.586 3.414 14 O -0.555 6.555 15 C -0.084 4.084 16 C 0.082 3.918 17 N -0.342 5.342 18 C 0.069 3.931 19 C -0.168 4.168 20 C -0.169 4.169 21 N -0.069 5.069 22 N -0.203 5.203 23 H 0.028 0.972 24 H 0.091 0.909 25 H 0.015 0.985 26 H 0.263 0.737 27 H 0.398 0.602 28 H 0.201 0.799 29 H 0.149 0.851 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.797 -2.132 -20.012 20.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.161 3.839 3 H 0.069 0.931 4 C -0.570 4.570 5 H 0.082 0.918 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.730 3.270 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.335 5.335 13 C 0.368 3.632 14 O -0.434 6.434 15 C -0.224 4.224 16 C -0.073 4.073 17 N -0.127 5.127 18 C -0.034 4.034 19 C -0.206 4.206 20 C -0.207 4.207 21 N -0.048 5.048 22 N -0.077 5.077 23 H 0.047 0.953 24 H 0.110 0.890 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.231 0.769 28 H 0.218 0.782 29 H 0.167 0.833 30 H 0.128 0.872 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.886 -2.665 -19.846 20.398 hybrid contribution 0.192 0.130 0.691 0.729 sum 4.077 -2.534 -19.155 19.748 Atomic orbital electron populations 1.22083 0.98250 0.99300 1.00953 1.18838 0.91188 0.94049 0.79785 0.93093 1.21281 1.32271 1.13238 0.90198 0.91818 1.24878 0.94817 0.94968 0.99036 1.69908 1.36044 1.22568 1.23735 0.86379 0.78600 0.79587 0.82479 1.19641 1.20917 1.20890 1.46403 1.63212 1.14098 1.09751 1.16822 0.78610 0.85875 0.81849 1.90753 1.52781 1.15019 1.84801 1.21940 1.12784 0.91096 0.96581 1.23260 0.97254 0.96669 0.90149 1.49804 1.44748 1.08678 1.09444 1.21981 1.00014 1.06517 0.74915 1.23519 1.03416 0.91468 1.02180 1.23506 0.98164 0.99263 0.99788 1.81991 1.22348 1.04136 0.96308 1.74661 1.08278 1.13476 1.11256 0.95328 0.89003 0.96585 0.92673 0.76895 0.78245 0.83319 0.87203 0.86185 0.86572 0.87637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.26 37.15 0.34 -3.42 16 2 C 0.26 6.93 2.56 -69.09 -0.18 6.76 16 3 H 0.05 1.51 7.58 -51.92 -0.39 1.12 16 4 C -0.53 -14.58 8.73 -34.44 -0.30 -14.88 16 5 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -25.23 11.32 55.43 0.63 -24.60 16 8 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.69 -15.72 5.07 -55.98 -0.28 -16.00 16 13 C 0.59 12.69 7.78 -12.48 -0.10 12.59 16 14 O -0.55 -13.33 16.53 5.28 0.09 -13.24 16 15 C -0.08 -1.51 6.99 -83.55 -0.58 -2.10 16 16 C 0.08 1.14 10.63 -16.83 -0.18 0.96 16 17 N -0.34 -4.26 3.96 -54.56 -0.22 -4.47 16 18 C 0.07 0.52 7.16 -67.93 -0.49 0.04 16 19 C -0.17 -0.84 10.00 -26.73 -0.27 -1.11 16 20 C -0.17 -0.97 10.46 -26.73 -0.28 -1.25 16 21 N -0.07 -1.09 13.78 60.35 0.83 -0.26 16 22 N -0.20 -3.65 12.04 32.85 0.40 -3.26 16 23 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.40 8.48 8.23 -40.82 -0.34 8.15 16 28 H 0.20 2.17 7.32 -52.49 -0.38 1.79 16 29 H 0.15 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.11 0.59 7.08 -51.93 -0.37 0.22 16 31 H 0.12 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 293.59 15.07 4.42 4.42 Total: -1.00 -32.66 293.59 -5.15 -37.81 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -3.87 Total: 4.17 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -2.12 Total: -0.69 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 1.35 Total: -48.59 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.09 Total: -13.24 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.66 -5.15 -37.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599222484.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.831 kcal (2) G-P(sol) polarization free energy of solvation -32.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds