Wall clock time and date at job start Mon Mar 30 2020 18:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47336 * 2 1 4 4 C 1.50698 * 109.47076 * 119.99692 * 2 1 3 5 5 H 1.08001 * 120.00173 * 119.99998 * 4 2 1 6 6 C 1.37885 * 119.99954 * 300.00019 * 4 2 1 7 7 N 1.31506 * 120.00188 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99811 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47107 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47178 * 120.00233 * 8 6 4 11 11 H 1.48501 * 109.47291 * 240.00080 * 8 6 4 12 12 N 1.46499 * 109.47350 * 240.00201 * 2 1 3 13 13 C 1.34771 * 120.00232 * 85.00028 * 12 2 1 14 14 O 1.21593 * 120.00343 * 359.97438 * 13 12 2 15 15 C 1.47527 * 119.99610 * 180.02562 * 13 12 2 16 16 C 1.36597 * 125.76547 * 179.97438 * 15 13 12 17 17 N 1.34820 * 106.83727 * 179.71308 * 16 15 13 18 18 C 1.46496 * 126.59512 * 180.28348 * 17 16 15 19 19 C 1.53004 * 117.49978 * 343.62996 * 18 17 16 20 20 C 1.52998 * 117.50144 * 275.00550 * 18 17 16 21 21 N 1.40214 * 106.80954 * 0.26969 * 17 16 15 22 22 N 1.28759 * 108.36470 * 359.97438 * 21 17 16 23 23 H 1.08993 * 109.47174 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47361 * 300.00452 * 1 2 3 25 25 H 1.09004 * 109.46997 * 60.00233 * 1 2 3 26 26 H 0.96998 * 120.00508 * 180.02562 * 7 6 4 27 27 H 0.97003 * 119.99564 * 265.00284 * 12 2 1 28 28 H 1.08002 * 126.58530 * 359.97438 * 16 15 13 29 29 H 1.08998 * 115.54797 * 129.33021 * 18 17 16 30 30 H 1.08997 * 117.49524 * 359.97438 * 19 18 17 31 31 H 1.08997 * 117.49969 * 145.01755 * 19 18 17 32 32 H 1.09005 * 117.50005 * 214.97765 * 20 18 17 33 33 H 1.08999 * 117.50215 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3212 -1.1201 4.0080 9 1 3.1463 -2.2868 3.6039 10 1 3.1464 -0.1871 4.8166 11 1 1.1659 -1.5864 4.8162 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8575 1.1614 -2.4119 15 6 2.6384 -0.7139 -3.5617 16 6 2.8130 -0.1503 -4.7937 17 7 3.2798 -1.1211 -5.6045 18 6 3.6214 -0.9852 -7.0226 19 6 3.0916 0.2449 -7.7623 20 6 2.4881 -1.1334 -8.0397 21 7 3.3756 -2.2856 -4.8295 22 7 2.9871 -2.0098 -3.6333 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7086 1.1614 3.4844 27 1 2.2490 -1.6318 -1.1526 28 1 2.6188 0.8768 -5.0650 29 1 4.6051 -1.3588 -7.3070 30 1 2.4884 0.9528 -7.1938 31 1 3.7267 0.6808 -8.5334 32 1 2.7263 -1.6043 -8.9935 33 1 1.4884 -1.3325 -7.6539 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599222484.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:27 Heat of formation + Delta-G solvation = 62.256491 kcal Electronic energy + Delta-G solvation = -17574.028962 eV Core-core repulsion = 14637.052343 eV Total energy + Delta-G solvation = -2936.976619 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.28770 -40.32805 -38.49630 -36.74897 -34.40253 -33.54019 -32.19929 -30.56400 -27.34340 -25.76088 -24.87703 -23.51020 -22.60042 -22.07538 -21.13422 -19.63847 -18.25872 -17.31645 -17.17756 -17.09522 -16.23695 -16.17334 -15.59878 -15.36791 -14.94407 -14.39985 -14.06890 -13.73172 -13.41198 -13.00767 -12.88885 -12.75351 -12.68768 -12.51581 -12.46804 -12.27713 -12.12770 -11.57579 -11.11514 -11.06612 -11.02310 -10.60393 -10.37160 -9.76714 -8.17513 -6.34343 0.08061 0.62524 0.97046 1.45078 1.45928 1.58740 2.28027 2.31580 2.44274 2.60239 3.12759 3.16646 3.42676 3.59575 3.77621 3.87335 3.93796 4.24127 4.54038 4.66669 4.74401 4.81579 4.92950 4.93592 5.07768 5.08259 5.41260 5.48208 5.58105 5.67284 5.87372 6.08768 6.70830 6.72869 6.98196 7.27410 7.43144 8.89221 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.049725 B = 0.004322 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.964642 B = 6477.577083 C = 6808.651202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H 0.009 0.991 4 C -0.550 4.550 5 H 0.067 0.933 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.973 3.027 9 H -0.265 1.265 10 H -0.280 1.280 11 H -0.276 1.276 12 N -0.692 5.692 13 C 0.589 3.411 14 O -0.585 6.585 15 C -0.116 4.116 16 C 0.106 3.894 17 N -0.322 5.322 18 C 0.033 3.967 19 C -0.147 4.147 20 C -0.162 4.162 21 N -0.082 5.082 22 N -0.227 5.227 23 H 0.037 0.963 24 H 0.072 0.928 25 H 0.017 0.983 26 H 0.267 0.733 27 H 0.404 0.596 28 H 0.231 0.769 29 H 0.169 0.831 30 H 0.108 0.892 31 H 0.150 0.850 32 H 0.142 0.858 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.621 -2.646 -21.855 22.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.166 3.834 3 H 0.027 0.973 4 C -0.588 4.588 5 H 0.086 0.914 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.797 3.203 9 H -0.189 1.189 10 H -0.206 1.206 11 H -0.201 1.201 12 N -0.339 5.339 13 C 0.373 3.627 14 O -0.465 6.465 15 C -0.256 4.256 16 C -0.052 4.052 17 N -0.106 5.106 18 C -0.068 4.068 19 C -0.185 4.185 20 C -0.200 4.200 21 N -0.062 5.062 22 N -0.100 5.100 23 H 0.056 0.944 24 H 0.091 0.909 25 H 0.036 0.964 26 H 0.076 0.924 27 H 0.239 0.761 28 H 0.247 0.753 29 H 0.186 0.814 30 H 0.126 0.874 31 H 0.168 0.832 32 H 0.160 0.840 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.726 -3.215 -21.743 22.481 hybrid contribution -0.048 0.335 1.067 1.119 sum 4.677 -2.880 -20.676 21.393 Atomic orbital electron populations 1.21904 0.97850 0.99476 1.00012 1.18489 0.91461 0.92185 0.81231 0.97273 1.21548 1.32756 1.13575 0.90949 0.91441 1.25751 0.94789 0.95586 1.02098 1.70032 1.36786 1.23763 1.24668 0.85287 0.78164 0.78472 0.78355 1.18892 1.20585 1.20149 1.46200 1.63849 1.14328 1.09477 1.17189 0.77521 0.85557 0.82395 1.90719 1.54014 1.16341 1.85469 1.21465 1.15896 0.91768 0.96473 1.23602 0.95047 0.97748 0.88792 1.50117 1.42460 1.07129 1.10927 1.22672 1.01821 1.09886 0.72382 1.23722 1.02641 0.90656 1.01458 1.23611 0.96498 1.00154 0.99763 1.81882 1.22578 1.05654 0.96050 1.74625 1.09149 1.13664 1.12532 0.94432 0.90945 0.96388 0.92376 0.76088 0.75253 0.81354 0.87361 0.83181 0.84013 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.01 9.26 71.98 0.67 -6.34 16 2 C 0.27 14.67 2.56 44.24 0.11 14.78 16 3 H 0.01 0.58 7.58 -2.38 -0.02 0.56 16 4 C -0.55 -30.65 8.73 25.60 0.22 -30.43 16 5 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 6 C 0.02 1.00 5.30 84.66 0.45 1.44 16 7 N -0.91 -52.99 11.32 21.45 0.24 -52.74 16 8 Si 0.97 43.34 29.54 68.60 2.03 45.36 16 9 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 12 N -0.69 -32.48 5.07 -449.29 -2.28 -34.75 16 13 C 0.59 26.03 7.78 86.69 0.67 26.71 16 14 O -0.58 -28.76 16.53 -4.01 -0.07 -28.82 16 15 C -0.12 -4.15 6.99 40.82 0.29 -3.86 16 16 C 0.11 2.77 10.63 83.85 0.89 3.66 16 17 N -0.32 -7.41 3.96 -326.54 -1.29 -8.70 16 18 C 0.03 0.40 7.16 44.99 0.32 0.72 16 19 C -0.15 -0.89 10.00 30.60 0.31 -0.58 16 20 C -0.16 -1.32 10.46 30.59 0.32 -1.00 16 21 N -0.08 -2.54 13.78 37.02 0.51 -2.03 16 22 N -0.23 -8.13 12.04 -49.99 -0.60 -8.74 16 23 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.07 4.08 6.07 -2.39 -0.01 4.06 16 25 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 27 H 0.40 17.70 8.23 -92.71 -0.76 16.94 16 28 H 0.23 4.43 7.32 -2.91 -0.02 4.41 16 29 H 0.17 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.11 0.75 7.08 -2.39 -0.02 0.74 16 31 H 0.15 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.14 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -72.36 293.59 3.17 -69.19 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.38 Total: 16.14 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 4.25 Total: 5.10 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -3.42 Total: -106.96 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.07 Total: -28.82 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -72.36 3.17 -69.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599222484.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.443 kcal (2) G-P(sol) polarization free energy of solvation -72.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds