Wall clock time and date at job start Mon Mar 30 2020 18:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 120.00257 * 2 1 4 4 H 1.48500 * 109.46794 * 275.05204 * 3 2 1 5 5 H 1.48500 * 109.47458 * 35.05008 * 3 2 1 6 6 H 1.48501 * 109.47288 * 155.05526 * 3 2 1 7 7 C 1.38811 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00483 * 347.95241 * 7 2 1 9 9 N 1.36945 * 119.99983 * 167.94516 * 7 2 1 10 10 C 1.46504 * 119.99668 * 123.76239 * 9 7 2 11 11 C 1.50698 * 109.46918 * 90.00346 * 10 9 7 12 12 C 1.38194 * 120.02518 * 259.99224 * 11 10 9 13 13 C 1.38223 * 120.11359 * 179.97438 * 12 11 10 14 14 C 1.38333 * 120.16098 * 0.02681 * 13 12 11 15 15 C 1.38239 * 120.04989 * 359.97438 * 14 13 12 16 16 F 1.35092 * 120.05518 * 179.97438 * 15 14 13 17 17 C 1.38794 * 120.02526 * 80.25149 * 11 10 9 18 18 N 1.39840 * 120.07979 * 359.97438 * 17 11 10 19 19 C 1.46494 * 119.99794 * 303.76480 * 9 7 2 20 20 C 1.52994 * 117.50303 * 3.17200 * 19 9 7 21 21 C 1.52991 * 117.50043 * 294.54815 * 19 9 7 22 22 H 0.96993 * 119.99485 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47141 * 330.00003 * 10 9 7 24 24 H 1.08995 * 109.46811 * 210.00110 * 10 9 7 25 25 H 1.08000 * 119.94298 * 359.97438 * 12 11 10 26 26 H 1.08007 * 119.92143 * 180.02562 * 13 12 11 27 27 H 1.08003 * 119.97309 * 179.97438 * 14 13 12 28 28 H 0.96998 * 119.99727 * 180.23864 * 18 17 11 29 29 H 0.96999 * 120.00326 * 0.22893 * 18 17 11 30 30 H 1.09007 * 115.54820 * 148.88320 * 19 9 7 31 31 H 1.08997 * 117.49533 * 0.02562 * 20 19 9 32 32 H 1.08997 * 117.50002 * 145.01992 * 20 19 9 33 33 H 1.09002 * 117.50229 * 214.98463 * 21 19 9 34 34 H 1.09003 * 117.50346 * 0.02562 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3910 2.1079 -1.3947 5 1 1.5053 2.6195 0.8040 6 1 3.5972 1.4116 0.5905 7 6 2.0102 -1.2022 0.0005 8 1 1.4881 -2.1271 0.1962 9 7 3.3570 -1.2154 -0.2471 10 6 4.2749 -1.8131 0.7258 11 6 4.4580 -3.2755 0.4111 12 6 3.7594 -4.2295 1.1262 13 6 3.9255 -5.5712 0.8387 14 6 4.7919 -5.9648 -0.1654 15 6 5.4942 -5.0161 -0.8850 16 9 6.3407 -5.4003 -1.8652 17 6 5.3325 -3.6654 -0.5937 18 7 6.0445 -2.7025 -1.3158 19 6 3.8799 -0.6319 -1.4850 20 6 2.8795 0.0427 -2.4256 21 6 3.4936 -1.3070 -2.8024 22 1 -0.4849 0.8400 -0.0004 23 1 3.8613 -1.7063 1.7286 24 1 5.2388 -1.3069 0.6745 25 1 3.0824 -3.9262 1.9111 26 1 3.3776 -6.3143 1.3993 27 1 4.9198 -7.0140 -0.3872 28 1 6.6528 -2.9761 -2.0201 29 1 5.9301 -1.7610 -1.1125 30 1 4.8774 -0.1979 -1.4154 31 1 1.8324 0.0527 -2.1233 32 1 3.2186 0.9209 -2.9750 33 1 4.2367 -1.3168 -3.5998 34 1 2.8501 -2.1851 -2.7484 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602449640.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:32 Heat of formation + Delta-G solvation = 34.152511 kcal Electronic energy + Delta-G solvation = -18755.111316 eV Core-core repulsion = 15796.996055 eV Total energy + Delta-G solvation = -2958.115261 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.118 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.41642 -39.06704 -37.14153 -34.20391 -33.24145 -31.94738 -29.82927 -28.19126 -25.89656 -23.46992 -21.87178 -21.59848 -21.19733 -19.75759 -17.24164 -16.98914 -16.64025 -16.18401 -15.32218 -15.09568 -14.70076 -14.58634 -14.06204 -13.73859 -13.36031 -13.01509 -12.67896 -12.37672 -11.84295 -11.73319 -11.39567 -11.25400 -10.78035 -10.62264 -10.49572 -10.39701 -10.33005 -9.80604 -9.50009 -9.19822 -8.54908 -8.18880 -7.12346 -6.48880 -6.03424 -3.76814 1.68744 1.92338 3.34502 3.44436 3.50493 4.07987 4.21708 4.47996 4.69862 4.83979 4.96278 5.17317 5.30241 5.39334 5.67425 5.72299 5.74883 5.96460 6.06155 6.08691 6.18467 6.41950 6.46897 6.50505 6.54803 6.61000 6.81326 6.99080 7.08146 7.25393 7.27027 7.80824 8.05419 8.07152 8.49451 8.94706 9.59105 10.07047 11.05212 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.029271 B = 0.008067 C = 0.007141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.349071 B = 3470.240494 C = 3920.039936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.305 1.305 6 H -0.270 1.270 7 C -0.281 4.281 8 H 0.072 0.928 9 N -0.566 5.566 10 C 0.188 3.812 11 C -0.133 4.133 12 C -0.066 4.066 13 C -0.158 4.158 14 C -0.119 4.119 15 C 0.001 3.999 16 F -0.154 7.154 17 C 0.206 3.794 18 N -0.869 5.869 19 C 0.108 3.892 20 C -0.201 4.201 21 C -0.202 4.202 22 H 0.265 0.735 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.126 0.874 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.393 0.607 29 H 0.402 0.598 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.866 -5.532 -0.493 12.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.148 4.148 3 Si 0.719 3.281 4 H -0.199 1.199 5 H -0.233 1.233 6 H -0.194 1.194 7 C -0.409 4.409 8 H 0.089 0.911 9 N -0.285 5.285 10 C 0.063 3.937 11 C -0.140 4.140 12 C -0.085 4.085 13 C -0.178 4.178 14 C -0.139 4.139 15 C -0.023 4.023 16 F -0.133 7.133 17 C 0.100 3.900 18 N -0.410 5.410 19 C 0.000 4.000 20 C -0.239 4.239 21 C -0.242 4.242 22 H 0.075 0.925 23 H 0.091 0.909 24 H 0.059 0.941 25 H 0.144 0.856 26 H 0.139 0.861 27 H 0.141 0.859 28 H 0.221 0.779 29 H 0.234 0.766 30 H 0.099 0.901 31 H 0.137 0.863 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.703 -5.421 -0.461 12.006 hybrid contribution 0.554 0.998 -0.679 1.328 sum 11.257 -4.423 -1.139 12.148 Atomic orbital electron populations 1.69843 1.06265 1.27083 1.50486 1.25892 0.95020 0.98647 0.95197 0.86716 0.80231 0.83373 0.77813 1.19918 1.23321 1.19438 1.18542 0.81586 0.93157 1.47660 0.91094 1.43566 1.03730 1.66843 1.14351 1.19812 0.93047 0.86622 0.94233 1.20369 0.97623 0.99085 0.96906 1.20925 0.96956 0.91930 0.98726 1.20681 1.01194 0.96166 0.99791 1.20738 0.97871 0.98311 0.96945 1.17112 0.99392 0.91578 0.94249 1.91370 1.69474 1.91721 1.60752 1.17558 0.92878 0.87040 0.92575 1.42516 1.49491 1.07831 1.41141 1.21249 0.94640 0.99908 0.84163 1.23539 1.01926 0.94672 1.03802 1.23269 1.03858 0.96700 1.00400 0.92521 0.90942 0.94136 0.85576 0.86146 0.85924 0.77939 0.76607 0.90074 0.86257 0.90720 0.91281 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.25 13.97 55.49 0.78 -25.48 16 2 C 0.06 1.50 3.88 -17.43 -0.07 1.44 16 3 Si 0.89 21.46 24.50 -169.99 -4.16 17.29 16 4 H -0.27 -6.35 5.88 56.52 0.33 -6.01 16 5 H -0.31 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.28 -7.42 9.18 -15.06 -0.14 -7.56 16 8 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 9 N -0.57 -12.55 2.04 -167.03 -0.34 -12.89 16 10 C 0.19 3.58 5.39 -5.19 -0.03 3.55 16 11 C -0.13 -2.36 5.48 -104.43 -0.57 -2.94 16 12 C -0.07 -1.10 9.66 -39.60 -0.38 -1.49 16 13 C -0.16 -2.37 10.04 -39.55 -0.40 -2.77 16 14 C -0.12 -1.80 10.02 -39.55 -0.40 -2.20 16 15 C 0.00 0.01 7.31 -39.25 -0.29 -0.28 16 16 F -0.15 -2.48 16.64 2.25 0.04 -2.44 16 17 C 0.21 3.47 6.74 -83.67 -0.56 2.91 16 18 N -0.87 -12.72 8.61 32.46 0.28 -12.44 16 19 C 0.11 2.19 3.49 -67.94 -0.24 1.95 16 20 C -0.20 -4.32 6.59 -26.74 -0.18 -4.49 16 21 C -0.20 -3.97 10.36 -26.74 -0.28 -4.25 16 22 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 23 H 0.07 1.39 7.90 -51.93 -0.41 0.98 16 24 H 0.04 0.69 7.01 -51.93 -0.36 0.33 16 25 H 0.13 2.04 8.04 -52.49 -0.42 1.62 16 26 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 27 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 28 H 0.39 5.06 8.32 -40.82 -0.34 4.72 16 29 H 0.40 5.85 4.53 -40.82 -0.19 5.67 16 30 H 0.08 1.45 7.07 -51.93 -0.37 1.08 16 31 H 0.12 2.99 5.05 -51.93 -0.26 2.73 16 32 H 0.07 1.46 7.85 -51.93 -0.41 1.05 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 LS Contribution 278.54 15.07 4.20 4.20 Total: -1.00 -28.83 278.54 -6.82 -35.64 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -4.08 Total: 12.24 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -3.52 Total: -16.12 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 0.71 Total: -50.81 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.16 Total: 17.29 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.83 -6.82 -35.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602449640.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.796 kcal (2) G-P(sol) polarization free energy of solvation -28.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds