Wall clock time and date at job start Mon Mar 30 2020 18:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47099 * 2 1 4 4 C 1.50703 * 109.47049 * 119.99914 * 2 1 3 5 5 H 1.07990 * 120.00514 * 94.83357 * 4 2 1 6 6 C 1.37879 * 119.99676 * 274.82942 * 4 2 1 7 7 N 1.31515 * 119.99835 * 174.91786 * 6 4 2 8 8 Si 1.86804 * 120.00036 * 354.92450 * 6 4 2 9 9 H 1.48496 * 109.46657 * 275.03794 * 8 6 4 10 10 H 1.48494 * 109.47320 * 35.04229 * 8 6 4 11 11 H 1.48502 * 109.46996 * 155.04318 * 8 6 4 12 12 N 1.46901 * 109.46985 * 239.99514 * 2 1 3 13 13 C 1.46901 * 110.99775 * 85.00245 * 12 2 1 14 14 C 1.50697 * 109.47086 * 180.02562 * 13 12 2 15 15 O 1.21279 * 120.00211 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00210 * 180.02562 * 14 13 12 17 17 C 1.39400 * 120.00154 * 185.20809 * 16 14 13 18 18 C 1.39234 * 120.08474 * 185.19367 * 17 16 14 19 19 N 1.31953 * 119.90185 * 179.97438 * 18 17 16 20 20 C 1.32244 * 120.07511 * 0.02562 * 19 18 17 21 21 C 1.38219 * 120.17471 * 359.97438 * 20 19 18 22 22 N 1.32218 * 120.09292 * 359.78920 * 21 20 19 23 23 H 1.09010 * 109.47045 * 174.99150 * 1 2 3 24 24 H 1.08999 * 109.47409 * 294.98351 * 1 2 3 25 25 H 1.08997 * 109.47472 * 54.98987 * 1 2 3 26 26 H 0.97001 * 119.99862 * 180.02562 * 7 6 4 27 27 H 1.00893 * 110.99963 * 321.04589 * 12 2 1 28 28 H 1.09000 * 109.47291 * 299.99774 * 13 12 2 29 29 H 1.08994 * 109.47157 * 59.99731 * 13 12 2 30 30 H 0.97003 * 119.99871 * 5.19999 * 16 14 13 31 31 H 1.07994 * 120.04665 * 359.95526 * 18 17 16 32 32 H 1.08004 * 119.91530 * 179.97438 * 20 19 18 33 33 H 1.07989 * 119.95686 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.2866 -1.7589 1.1828 6 6 2.1673 -0.0216 2.4173 7 7 2.5094 -0.6619 3.5139 8 14 1.8641 1.8209 2.4675 9 1 3.1040 2.5374 2.0745 10 1 0.7712 2.1687 1.5244 11 1 1.4762 2.2214 3.8440 12 7 2.0196 -0.6926 -1.1994 13 6 2.0824 0.2224 -2.3469 14 6 2.5873 -0.5220 -3.5560 15 8 2.8676 -1.6988 -3.4702 16 7 2.7282 0.1202 -4.7325 17 6 3.0906 -0.5907 -5.8756 18 6 3.3421 0.0846 -7.0669 19 7 3.6854 -0.5918 -8.1467 20 6 3.7901 -1.9092 -8.0980 21 6 3.5411 -2.5827 -6.9169 22 7 3.2012 -1.9113 -5.8298 23 1 -0.3634 -1.0238 -0.0897 24 1 -0.3634 0.4340 0.9315 25 1 -0.3634 0.5896 -0.8417 26 1 2.6040 -0.1774 4.3489 27 1 1.4496 -1.4980 -1.4099 28 1 1.0871 0.6162 -2.5526 29 1 2.7588 1.0460 -2.1182 30 1 2.5774 1.0770 -4.7839 31 1 3.2560 1.1604 -7.1073 32 1 4.0708 -2.4603 -8.9834 33 1 3.6280 -3.6585 -6.8811 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602871781.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:37 Heat of formation + Delta-G solvation = 36.004426 kcal Electronic energy + Delta-G solvation = -17449.612130 eV Core-core repulsion = 14511.497135 eV Total energy + Delta-G solvation = -2938.114994 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.43287 -39.45417 -36.17238 -35.17745 -34.06331 -32.43339 -30.89168 -29.72573 -26.13279 -25.19889 -24.90318 -23.63637 -20.66775 -20.14634 -18.56550 -17.57400 -17.05002 -16.90424 -16.16939 -15.84066 -15.01537 -14.75761 -14.54735 -14.07561 -13.68264 -13.27500 -13.14750 -12.61048 -12.24731 -12.08262 -11.69858 -11.64565 -11.35588 -11.10746 -10.77811 -10.64372 -10.31542 -10.03351 -9.75847 -9.23551 -8.96504 -8.63784 -8.53879 -7.50400 -6.05533 -4.02948 0.58603 1.00417 2.58892 2.72552 3.25394 3.31966 3.34409 3.63430 4.02115 4.07319 4.22267 4.39769 4.77790 4.94257 4.99259 5.03735 5.20919 5.30188 5.55863 5.60187 5.81799 6.15020 6.29334 6.33106 6.52319 6.67570 6.85102 7.10037 7.22719 7.61791 7.69212 7.84777 8.18192 8.28149 8.65042 9.05795 9.55865 11.08149 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.050460 B = 0.004094 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.760031 B = 6837.682805 C = 7060.430259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.185 3.815 3 H 0.035 0.965 4 C -0.495 4.495 5 H 0.080 0.920 6 C 0.069 3.931 7 N -0.899 5.899 8 Si 0.872 3.128 9 H -0.276 1.276 10 H -0.265 1.265 11 H -0.288 1.288 12 N -0.658 5.658 13 C 0.042 3.958 14 C 0.500 3.500 15 O -0.449 6.449 16 N -0.662 5.662 17 C 0.324 3.676 18 C 0.014 3.986 19 N -0.414 5.414 20 C -0.001 4.001 21 C 0.090 3.910 22 N -0.436 5.436 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.019 0.981 26 H 0.264 0.736 27 H 0.341 0.659 28 H 0.053 0.947 29 H 0.099 0.901 30 H 0.419 0.581 31 H 0.168 0.832 32 H 0.169 0.831 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.823 3.987 -21.533 21.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.076 3.924 3 H 0.053 0.947 4 C -0.533 4.533 5 H 0.098 0.902 6 C -0.132 4.132 7 N -0.537 5.537 8 Si 0.700 3.300 9 H -0.202 1.202 10 H -0.190 1.190 11 H -0.214 1.214 12 N -0.289 5.289 13 C -0.091 4.091 14 C 0.286 3.714 15 O -0.315 6.315 16 N -0.311 5.311 17 C 0.089 3.911 18 C -0.152 4.152 19 N -0.128 5.128 20 C -0.160 4.160 21 C -0.071 4.071 22 N -0.157 5.157 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.038 0.962 26 H 0.074 0.926 27 H 0.159 0.841 28 H 0.071 0.929 29 H 0.117 0.883 30 H 0.256 0.744 31 H 0.186 0.814 32 H 0.186 0.814 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.051 3.211 -20.937 21.182 hybrid contribution -1.136 1.649 -0.085 2.005 sum -1.085 4.860 -21.023 21.604 Atomic orbital electron populations 1.22752 1.00853 1.00207 0.99596 1.19645 0.89380 0.94541 0.88801 0.94730 1.20865 1.42947 0.98676 0.90832 0.90241 1.24948 0.94873 0.97878 0.95518 1.69893 1.48326 1.35923 0.99574 0.86983 0.78994 0.86711 0.77322 1.20231 1.18990 1.21445 1.60596 1.59091 1.08073 1.01188 1.21883 1.00170 0.97036 0.89995 1.21421 0.78117 0.88509 0.83357 1.90811 1.42710 1.15268 1.82683 1.43888 1.68328 1.12210 1.06666 1.19632 0.93525 0.90166 0.87809 1.23167 1.02479 1.01392 0.88203 1.68310 1.07623 1.08708 1.28131 1.23561 1.01750 0.91059 0.99678 1.23784 0.93332 1.01877 0.88070 1.68539 1.12246 1.05724 1.29198 0.93252 0.92597 0.96227 0.92638 0.84060 0.92946 0.88289 0.74375 0.81450 0.81416 0.81112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.55 8.79 37.16 0.33 -3.22 16 2 C 0.18 4.20 2.13 -68.86 -0.15 4.05 16 3 H 0.03 0.78 5.56 -51.93 -0.29 0.49 16 4 C -0.49 -13.88 9.19 -34.44 -0.32 -14.19 16 5 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 8 Si 0.87 20.83 26.20 -169.99 -4.45 16.38 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.27 -5.88 6.15 56.52 0.35 -5.54 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 N -0.66 -13.53 5.86 -109.22 -0.64 -14.17 16 13 C 0.04 0.65 5.97 -4.98 -0.03 0.62 16 14 C 0.50 7.72 7.82 -10.99 -0.09 7.64 16 15 O -0.45 -8.94 14.52 5.56 0.08 -8.86 16 16 N -0.66 -7.42 5.39 -11.32 -0.06 -7.48 16 17 C 0.32 3.98 7.41 -154.42 -1.14 2.83 16 18 C 0.01 0.13 11.09 -17.13 -0.19 -0.06 16 19 N -0.41 -4.38 10.49 -12.89 -0.14 -4.52 16 20 C 0.00 -0.01 11.21 -17.38 -0.19 -0.20 16 21 C 0.09 0.96 11.22 -17.39 -0.20 0.76 16 22 N -0.44 -6.30 8.10 -12.17 -0.10 -6.40 16 23 H 0.05 0.98 8.04 -51.92 -0.42 0.56 16 24 H 0.05 1.19 6.74 -51.93 -0.35 0.84 16 25 H 0.02 0.33 7.58 -51.93 -0.39 -0.06 16 26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.34 7.00 8.11 -39.30 -0.32 6.68 16 28 H 0.05 0.69 7.53 -51.93 -0.39 0.30 16 29 H 0.10 1.39 8.05 -51.93 -0.42 0.97 16 30 H 0.42 2.80 8.71 -40.82 -0.36 2.44 16 31 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.17 0.94 8.06 -52.48 -0.42 0.52 16 33 H 0.17 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 286.06 15.07 4.31 4.31 Total: -1.00 -35.86 286.06 -6.11 -41.97 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -3.81 Total: 5.35 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -2.07 Total: 0.11 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -0.16 Total: -59.26 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.08 Total: -8.86 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.45 Total: 16.38 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -35.86 -6.11 -41.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602871781.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.971 kcal (2) G-P(sol) polarization free energy of solvation -35.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds