Wall clock time and date at job start Mon Mar 30 2020 18:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47099 * 2 1 4 4 C 1.50703 * 109.47049 * 119.99914 * 2 1 3 5 5 H 1.07990 * 120.00514 * 94.83357 * 4 2 1 6 6 C 1.37879 * 119.99676 * 274.82942 * 4 2 1 7 7 N 1.31515 * 119.99835 * 174.91786 * 6 4 2 8 8 Si 1.86804 * 120.00036 * 354.92450 * 6 4 2 9 9 H 1.48496 * 109.46657 * 275.03794 * 8 6 4 10 10 H 1.48494 * 109.47320 * 35.04229 * 8 6 4 11 11 H 1.48502 * 109.46996 * 155.04318 * 8 6 4 12 12 N 1.46901 * 109.46985 * 239.99514 * 2 1 3 13 13 C 1.46901 * 110.99775 * 85.00245 * 12 2 1 14 14 C 1.50697 * 109.47086 * 180.02562 * 13 12 2 15 15 O 1.21279 * 120.00211 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00210 * 180.02562 * 14 13 12 17 17 C 1.39400 * 120.00154 * 185.20809 * 16 14 13 18 18 C 1.39234 * 120.08474 * 185.19367 * 17 16 14 19 19 N 1.31953 * 119.90185 * 179.97438 * 18 17 16 20 20 C 1.32244 * 120.07511 * 0.02562 * 19 18 17 21 21 C 1.38219 * 120.17471 * 359.97438 * 20 19 18 22 22 N 1.32218 * 120.09292 * 359.78920 * 21 20 19 23 23 H 1.09010 * 109.47045 * 174.99150 * 1 2 3 24 24 H 1.08999 * 109.47409 * 294.98351 * 1 2 3 25 25 H 1.08997 * 109.47472 * 54.98987 * 1 2 3 26 26 H 0.97001 * 119.99862 * 180.02562 * 7 6 4 27 27 H 1.00893 * 110.99963 * 321.04589 * 12 2 1 28 28 H 1.09000 * 109.47291 * 299.99774 * 13 12 2 29 29 H 1.08994 * 109.47157 * 59.99731 * 13 12 2 30 30 H 0.97003 * 119.99871 * 5.19999 * 16 14 13 31 31 H 1.07994 * 120.04665 * 359.95526 * 18 17 16 32 32 H 1.08004 * 119.91530 * 179.97438 * 20 19 18 33 33 H 1.07989 * 119.95686 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.2866 -1.7589 1.1828 6 6 2.1673 -0.0216 2.4173 7 7 2.5094 -0.6619 3.5139 8 14 1.8641 1.8209 2.4675 9 1 3.1040 2.5374 2.0745 10 1 0.7712 2.1687 1.5244 11 1 1.4762 2.2214 3.8440 12 7 2.0196 -0.6926 -1.1994 13 6 2.0824 0.2224 -2.3469 14 6 2.5873 -0.5220 -3.5560 15 8 2.8676 -1.6988 -3.4702 16 7 2.7282 0.1202 -4.7325 17 6 3.0906 -0.5907 -5.8756 18 6 3.3421 0.0846 -7.0669 19 7 3.6854 -0.5918 -8.1467 20 6 3.7901 -1.9092 -8.0980 21 6 3.5411 -2.5827 -6.9169 22 7 3.2012 -1.9113 -5.8298 23 1 -0.3634 -1.0238 -0.0897 24 1 -0.3634 0.4340 0.9315 25 1 -0.3634 0.5896 -0.8417 26 1 2.6040 -0.1774 4.3489 27 1 1.4496 -1.4980 -1.4099 28 1 1.0871 0.6162 -2.5526 29 1 2.7588 1.0460 -2.1182 30 1 2.5774 1.0770 -4.7839 31 1 3.2560 1.1604 -7.1073 32 1 4.0708 -2.4603 -8.9834 33 1 3.6280 -3.6585 -6.8811 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602871781.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:36 Heat of formation + Delta-G solvation = 6.040021 kcal Electronic energy + Delta-G solvation = -17450.911484 eV Core-core repulsion = 14511.497135 eV Total energy + Delta-G solvation = -2939.414349 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.28399 -40.55570 -37.72611 -36.26534 -34.92659 -34.43407 -32.07802 -31.04779 -27.41495 -27.11050 -25.79156 -24.59602 -21.95273 -21.70974 -19.62804 -18.84848 -18.49087 -17.71225 -17.34822 -16.94681 -16.41858 -16.08310 -15.65703 -15.37864 -15.15987 -14.60575 -14.43287 -13.93576 -13.85195 -13.57282 -12.97785 -12.89783 -12.55601 -12.51227 -12.43108 -12.05164 -11.69925 -11.69048 -11.31219 -11.08134 -10.66876 -9.88151 -9.47933 -9.03422 -8.22975 -6.26713 -0.19969 0.18574 1.38809 1.41163 1.51454 1.62501 1.68584 2.39498 2.83532 3.07383 3.18716 3.40581 3.45990 3.62106 3.89334 4.21271 4.31028 4.34689 4.40785 4.55612 4.56788 4.72331 4.79790 5.03870 5.04881 5.47197 5.51994 5.68579 5.93738 6.07778 6.43625 6.63009 6.68240 6.79424 6.87655 7.21876 7.37304 8.95182 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.050460 B = 0.004094 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.760031 B = 6837.682805 C = 7060.430259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.190 3.810 3 H 0.048 0.952 4 C -0.506 4.506 5 H 0.021 0.979 6 C 0.003 3.997 7 N -0.956 5.956 8 Si 0.948 3.052 9 H -0.267 1.267 10 H -0.229 1.229 11 H -0.291 1.291 12 N -0.685 5.685 13 C 0.044 3.956 14 C 0.505 3.495 15 O -0.507 6.507 16 N -0.643 5.643 17 C 0.296 3.704 18 C 0.030 3.970 19 N -0.432 5.432 20 C 0.014 3.986 21 C 0.074 3.926 22 N -0.486 5.486 23 H 0.042 0.958 24 H 0.045 0.955 25 H 0.061 0.939 26 H 0.265 0.735 27 H 0.336 0.664 28 H 0.089 0.911 29 H 0.118 0.882 30 H 0.441 0.559 31 H 0.206 0.794 32 H 0.204 0.796 33 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.604 7.058 -24.297 25.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.081 3.919 3 H 0.066 0.934 4 C -0.544 4.544 5 H 0.040 0.960 6 C -0.193 4.193 7 N -0.597 5.597 8 Si 0.770 3.230 9 H -0.192 1.192 10 H -0.152 1.152 11 H -0.217 1.217 12 N -0.316 5.316 13 C -0.088 4.088 14 C 0.291 3.709 15 O -0.377 6.377 16 N -0.294 5.294 17 C 0.062 3.938 18 C -0.135 4.135 19 N -0.146 5.146 20 C -0.145 4.145 21 C -0.086 4.086 22 N -0.207 5.207 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.154 0.846 28 H 0.107 0.893 29 H 0.136 0.864 30 H 0.282 0.718 31 H 0.222 0.778 32 H 0.220 0.780 33 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -0.739 6.325 -23.785 24.623 hybrid contribution -0.831 0.555 0.630 1.182 sum -1.571 6.881 -23.155 24.207 Atomic orbital electron populations 1.22595 0.98645 1.00703 1.00849 1.19441 0.90835 0.94166 0.87413 0.93433 1.21206 1.42734 0.96659 0.93836 0.96023 1.25978 0.94583 1.04052 0.94694 1.70090 1.50612 1.38502 1.00526 0.85781 0.80242 0.78986 0.77950 1.19223 1.15177 1.21742 1.60295 1.59451 1.09134 1.02730 1.21964 1.02590 0.96157 0.88118 1.21415 0.77281 0.87770 0.84403 1.90798 1.45500 1.17599 1.83769 1.43506 1.67408 1.13107 1.05343 1.19880 0.95183 0.89996 0.88722 1.23672 1.00180 1.02897 0.86793 1.68441 1.08448 1.09374 1.28339 1.24100 0.99377 0.90864 1.00179 1.24178 0.93585 1.02914 0.87891 1.68417 1.13472 1.07439 1.31382 0.93916 0.93563 0.91965 0.92665 0.84609 0.89338 0.86404 0.71765 0.77778 0.77950 0.79313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.42 8.79 71.98 0.63 -5.78 16 2 C 0.19 8.40 2.13 44.17 0.09 8.49 16 3 H 0.05 1.98 5.56 -2.39 -0.01 1.97 16 4 C -0.51 -29.25 9.19 25.60 0.24 -29.02 16 5 H 0.02 1.44 8.06 -2.92 -0.02 1.42 16 6 C 0.00 0.18 5.47 84.66 0.46 0.64 16 7 N -0.96 -60.83 13.96 21.45 0.30 -60.53 16 8 Si 0.95 42.29 26.20 68.60 1.80 44.08 16 9 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 10 H -0.23 -8.83 6.15 99.48 0.61 -8.22 16 11 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 12 N -0.68 -27.80 5.86 -499.47 -2.93 -30.73 16 13 C 0.04 1.23 5.97 85.56 0.51 1.74 16 14 C 0.50 14.97 7.82 87.66 0.69 15.65 16 15 O -0.51 -20.54 14.52 -3.03 -0.04 -20.59 16 16 N -0.64 -12.98 5.39 -308.13 -1.66 -14.64 16 17 C 0.30 6.81 7.41 132.89 0.99 7.80 16 18 C 0.03 0.50 11.09 84.91 0.94 1.44 16 19 N -0.43 -7.96 10.49 -194.71 -2.04 -10.00 16 20 C 0.01 0.22 11.21 84.63 0.95 1.17 16 21 C 0.07 1.51 11.22 84.63 0.95 2.46 16 22 N -0.49 -13.86 8.10 -192.42 -1.56 -15.42 16 23 H 0.04 1.65 8.04 -2.38 -0.02 1.63 16 24 H 0.05 1.83 6.74 -2.39 -0.02 1.82 16 25 H 0.06 1.84 7.58 -2.39 -0.02 1.83 16 26 H 0.26 15.69 8.31 -92.71 -0.77 14.91 16 27 H 0.34 14.01 8.11 -89.70 -0.73 13.29 16 28 H 0.09 1.89 7.53 -2.39 -0.02 1.87 16 29 H 0.12 2.86 8.05 -2.39 -0.02 2.84 16 30 H 0.44 4.33 8.71 -92.71 -0.81 3.52 16 31 H 0.21 1.65 8.06 -2.91 -0.02 1.63 16 32 H 0.20 1.61 8.06 -2.91 -0.02 1.58 16 33 H 0.19 2.77 8.06 -2.92 -0.02 2.75 16 Total: -1.00 -83.31 286.06 -0.17 -83.48 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -0.48 Total: 19.75 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 6.45 Total: 4.59 kcal Atomic # 7 Polarization: -123.42 SS G_CDS: -7.89 Total: -131.31 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.04 Total: -20.59 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 1.80 Total: 44.08 kcal Total: -83.31 -0.17 -83.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602871781.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.518 kcal (2) G-P(sol) polarization free energy of solvation -83.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds