Wall clock time and date at job start Mon Mar 30 2020 18:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47487 * 2 1 4 4 C 1.50699 * 109.47015 * 239.99749 * 2 1 3 5 5 H 1.08001 * 120.00523 * 239.99831 * 4 2 1 6 6 C 1.37884 * 119.99923 * 60.00421 * 4 2 1 7 7 N 1.31504 * 120.00406 * 179.97438 * 6 4 2 8 8 Si 1.86807 * 119.99699 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46978 * 269.99939 * 8 6 4 10 10 H 1.48498 * 109.46985 * 29.99689 * 8 6 4 11 11 H 1.48501 * 109.46837 * 150.00117 * 8 6 4 12 12 N 1.46503 * 109.47112 * 120.00479 * 2 1 3 13 13 C 1.46500 * 120.00150 * 65.60581 * 12 2 1 14 14 C 1.38501 * 119.99902 * 245.60955 * 12 2 1 15 15 C 1.39900 * 120.51326 * 10.67889 * 14 12 2 16 16 C 1.39048 * 118.18696 * 179.76150 * 15 14 12 17 17 C 1.48441 * 120.50377 * 180.21238 * 16 15 14 18 18 N 1.34772 * 119.99648 * 180.30123 * 17 16 15 19 19 O 1.21484 * 119.99949 * 0.30453 * 17 16 15 20 20 N 1.33337 * 118.98656 * 0.50907 * 16 15 14 21 21 C 1.31530 * 120.93207 * 359.72774 * 20 16 15 22 22 N 1.31876 * 122.01256 * 0.02562 * 21 20 16 23 23 H 1.08999 * 109.47115 * 59.99932 * 1 2 3 24 24 H 1.09001 * 109.47710 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46981 * 299.99906 * 1 2 3 26 26 H 0.97001 * 120.00381 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47326 * 90.00416 * 13 12 2 28 28 H 1.09004 * 109.47228 * 210.00557 * 13 12 2 29 29 H 1.09004 * 109.47148 * 330.00023 * 13 12 2 30 30 H 1.08002 * 120.90463 * 359.97438 * 15 14 12 31 31 H 0.96997 * 120.00595 * 0.02562 * 18 17 16 32 32 H 0.96999 * 120.00033 * 179.97438 * 18 17 16 33 33 H 1.08004 * 118.99532 * 179.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 2.1379 -0.8590 -3.5565 8 14 0.6248 1.2791 -2.6541 9 1 -0.8028 0.8727 -2.6998 10 1 0.8470 2.1764 -1.4919 11 1 0.9760 1.9952 -3.9068 12 7 2.0183 -0.6907 1.1961 13 6 1.7685 -2.1240 1.3677 14 6 2.7162 0.0114 2.1648 15 6 2.7709 1.4088 2.1281 16 6 3.4809 2.0648 3.1277 17 6 3.5685 3.5465 3.1412 18 7 4.2645 4.1715 4.1115 19 8 3.0129 4.1958 2.2778 20 7 4.0867 1.3422 4.0704 21 6 4.0149 0.0289 4.0662 22 7 3.3483 -0.6318 3.1398 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.9033 -0.5278 -4.4375 27 1 2.5889 -2.6911 0.9279 28 1 1.6954 -2.3555 2.4303 29 1 0.8351 -2.3920 0.8725 30 1 2.2724 1.9632 1.3467 31 1 4.7084 3.6531 4.8007 32 1 4.3221 5.1397 4.1202 33 1 4.5180 -0.5255 4.8447 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603300797.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:39 Heat of formation + Delta-G solvation = 4.790304 kcal Electronic energy + Delta-G solvation = -18251.410127 eV Core-core repulsion = 15311.941587 eV Total energy + Delta-G solvation = -2939.468540 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.11883 -40.26767 -38.69552 -35.42271 -34.75446 -33.88764 -32.74956 -31.67248 -28.03506 -27.24306 -25.64467 -25.17644 -22.69186 -21.34510 -19.38346 -19.12054 -18.57474 -17.83113 -17.23238 -16.68765 -16.51927 -16.22520 -15.75587 -15.70625 -15.16622 -14.89044 -14.75430 -14.43465 -14.10995 -13.65149 -13.20534 -12.99573 -12.57857 -12.24343 -11.99459 -11.75443 -11.68955 -11.54867 -11.29719 -11.01539 -10.82214 -10.74915 -10.30870 -8.80750 -8.38988 -6.45864 -0.43730 0.23071 1.26273 1.35459 1.42225 1.71313 1.88130 2.23584 2.25296 2.93462 2.95590 3.16270 3.43994 3.69358 3.99485 4.24221 4.34023 4.44702 4.54092 4.58988 4.63961 4.71239 4.88469 4.98239 5.22368 5.33576 5.39441 5.60992 5.77427 6.01838 6.21795 6.35894 6.49365 6.59413 7.13487 7.19136 7.24600 8.76945 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.022262 B = 0.007577 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.468110 B = 3694.599892 C = 4539.725693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.240 3.760 3 H 0.044 0.956 4 C -0.532 4.532 5 H 0.044 0.956 6 C 0.028 3.972 7 N -0.936 5.936 8 Si 0.937 3.063 9 H -0.255 1.255 10 H -0.252 1.252 11 H -0.296 1.296 12 N -0.571 5.571 13 C 0.112 3.888 14 C 0.432 3.568 15 C -0.253 4.253 16 C 0.146 3.854 17 C 0.577 3.423 18 N -0.803 5.803 19 O -0.570 6.570 20 N -0.545 5.545 21 C 0.338 3.662 22 N -0.581 5.581 23 H 0.047 0.953 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.270 0.730 27 H 0.036 0.964 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.135 0.865 31 H 0.425 0.575 32 H 0.418 0.582 33 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.392 5.132 17.584 18.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.137 3.863 3 H 0.061 0.939 4 C -0.571 4.571 5 H 0.062 0.938 6 C -0.172 4.172 7 N -0.575 5.575 8 Si 0.763 3.237 9 H -0.180 1.180 10 H -0.177 1.177 11 H -0.223 1.223 12 N -0.280 5.280 13 C -0.030 4.030 14 C 0.187 3.813 15 C -0.283 4.283 16 C 0.003 3.997 17 C 0.359 3.641 18 N -0.368 5.368 19 O -0.448 6.448 20 N -0.268 5.268 21 C 0.049 3.951 22 N -0.307 5.307 23 H 0.065 0.935 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.054 0.946 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.153 0.847 31 H 0.257 0.743 32 H 0.251 0.749 33 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 1.316 4.810 17.313 18.017 hybrid contribution -0.467 0.870 -1.295 1.628 sum 0.850 5.681 16.019 17.017 Atomic orbital electron populations 1.22386 0.96519 1.02466 1.00345 1.19225 0.92050 0.93169 0.81835 0.93860 1.21286 1.32210 1.13526 0.90029 0.93789 1.25628 0.96916 0.99498 0.95163 1.69988 1.46711 1.42079 0.98731 0.86046 0.79870 0.80055 0.77738 1.18013 1.17662 1.22322 1.46780 1.53633 1.09667 1.17882 1.21474 1.00814 0.78845 1.01892 1.18733 0.86972 0.88080 0.87550 1.22257 1.07959 0.94312 1.03812 1.21128 0.92869 0.94639 0.91028 1.17867 0.78676 0.85766 0.81803 1.43357 1.52604 1.11990 1.28834 1.90832 1.47946 1.66696 1.39348 1.68319 1.23629 1.09258 1.25577 1.25477 0.89435 0.86859 0.93341 1.68025 1.14634 1.41625 1.06454 0.93478 0.91364 0.92111 0.92079 0.94570 0.89730 0.90818 0.84725 0.74278 0.74887 0.74164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.31 8.74 71.98 0.63 -5.68 16 2 C 0.24 10.90 2.09 44.24 0.09 10.99 16 3 H 0.04 2.07 4.63 -2.39 -0.01 2.06 16 4 C -0.53 -29.10 8.89 25.60 0.23 -28.88 16 5 H 0.04 2.69 7.58 -2.91 -0.02 2.66 16 6 C 0.03 1.54 5.45 84.66 0.46 2.01 16 7 N -0.94 -56.63 13.96 21.45 0.30 -56.33 16 8 Si 0.94 43.38 24.37 68.60 1.67 45.05 16 9 H -0.25 -10.92 6.87 99.48 0.68 -10.24 16 10 H -0.25 -11.19 6.53 99.48 0.65 -10.54 16 11 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 12 N -0.57 -23.12 2.86 -708.23 -2.02 -25.14 16 13 C 0.11 3.96 9.41 127.77 1.20 5.16 16 14 C 0.43 16.33 7.34 133.30 0.98 17.31 16 15 C -0.25 -9.51 8.84 22.87 0.20 -9.31 16 16 C 0.15 4.64 6.79 41.83 0.28 4.92 16 17 C 0.58 17.02 8.10 86.96 0.70 17.73 16 18 N -0.80 -14.50 8.87 -175.20 -1.55 -16.05 16 19 O -0.57 -21.42 17.25 -3.66 -0.06 -21.48 16 20 N -0.54 -14.24 9.70 -189.41 -1.84 -16.08 16 21 C 0.34 8.45 12.27 180.94 2.22 10.67 16 22 N -0.58 -18.77 9.40 -197.64 -1.86 -20.63 16 23 H 0.05 1.92 3.27 -2.39 -0.01 1.92 16 24 H 0.07 2.56 6.90 -2.39 -0.02 2.55 16 25 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 27 H 0.04 1.37 8.00 -2.39 -0.02 1.35 16 28 H 0.08 2.56 7.59 -2.39 -0.02 2.54 16 29 H 0.07 2.51 6.74 -2.38 -0.02 2.50 16 30 H 0.13 5.57 5.77 -2.91 -0.02 5.55 16 31 H 0.42 5.80 8.21 -92.71 -0.76 5.04 16 32 H 0.42 5.63 8.93 -92.71 -0.83 4.80 16 33 H 0.24 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -69.73 276.95 1.15 -68.59 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -0.49 Total: 17.15 kcal Atomic # 6 Polarization: 17.92 SS G_CDS: 7.00 Total: 24.92 kcal Atomic # 7 Polarization: -127.26 SS G_CDS: -6.97 Total: -134.23 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.06 Total: -21.48 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.67 Total: 45.05 kcal Total: -69.73 1.15 -68.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603300797.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.376 kcal (2) G-P(sol) polarization free energy of solvation -69.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds