Wall clock time and date at job start Mon Mar 30 2020 18:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99653 * 2 1 4 4 H 1.48499 * 109.47269 * 270.00217 * 3 2 1 5 5 H 1.48501 * 109.47311 * 30.00258 * 3 2 1 6 6 H 1.48498 * 109.46945 * 150.00145 * 3 2 1 7 7 C 1.37876 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99524 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99967 * 179.97438 * 7 2 1 10 10 C 1.53123 * 109.52122 * 180.02562 * 9 7 2 11 11 C 1.53037 * 109.27640 * 177.56283 * 10 9 7 12 12 N 1.46849 * 109.52039 * 300.82059 * 11 10 9 13 13 C 1.39333 * 110.99846 * 185.84319 * 12 11 10 14 14 C 1.39394 * 120.86631 * 299.99935 * 13 12 11 15 15 C 1.37945 * 119.09412 * 179.97438 * 14 13 12 16 16 N 1.31969 * 120.88336 * 359.97438 * 15 14 13 17 17 C 1.32011 * 121.91816 * 0.02562 * 16 15 14 18 18 C 1.38081 * 120.81042 * 359.97438 * 17 16 15 19 19 F 1.35103 * 120.48399 * 180.02562 * 18 17 16 20 20 C 1.46845 * 111.20031 * 61.74352 * 12 11 10 21 21 C 1.53037 * 109.52433 * 298.25574 * 20 12 11 22 22 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.57447 * 59.84308 * 9 7 2 24 24 H 1.08996 * 109.49934 * 57.61903 * 10 9 7 25 25 H 1.09000 * 109.50165 * 297.50344 * 10 9 7 26 26 H 1.09000 * 109.45807 * 180.80554 * 11 10 9 27 27 H 1.08994 * 109.46354 * 60.83228 * 11 10 9 28 28 H 1.08002 * 120.45749 * 0.25051 * 14 13 12 29 29 H 1.08001 * 119.55802 * 179.97438 * 15 14 13 30 30 H 1.08003 * 119.59013 * 180.02562 * 17 16 15 31 31 H 1.09003 * 109.46146 * 58.27409 * 20 12 11 32 32 H 1.09006 * 109.46173 * 178.23868 * 20 12 11 33 33 H 1.08994 * 109.50329 * 299.24217 * 21 20 12 34 34 H 1.08995 * 109.50176 * 179.11477 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0047 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0234 -2.6371 0.0001 11 6 5.5525 -2.6310 -0.0619 12 7 5.9914 -1.9371 -1.2795 13 6 7.3731 -2.0271 -1.4349 14 6 8.2364 -1.5154 -0.4675 15 6 9.5982 -1.6248 -0.6583 16 7 10.0863 -2.2049 -1.7386 17 6 9.3035 -2.7021 -2.6780 18 6 7.9292 -2.6332 -2.5631 19 9 7.1342 -3.1447 -3.5283 20 6 5.5519 -0.5360 -1.2799 21 6 4.0228 -0.4795 -1.2542 22 1 -0.4850 0.8400 0.0004 23 1 3.8771 -0.6774 0.8874 24 1 3.6260 -3.1641 -0.8673 25 1 3.6981 -3.1385 0.9117 26 1 5.9194 -3.6573 -0.0764 27 1 5.9493 -2.1158 0.8127 28 1 7.8445 -1.0436 0.4215 29 1 10.2739 -1.2306 0.0862 30 1 9.7434 -3.1693 -3.5467 31 1 5.9489 -0.0306 -0.3994 32 1 5.9186 -0.0406 -2.1790 33 1 3.6255 -0.9727 -2.1413 34 1 3.6973 0.5606 -1.2386 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603332812.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:46 Heat of formation + Delta-G solvation = -1.137341 kcal Electronic energy + Delta-G solvation = -18368.104514 eV Core-core repulsion = 15408.458970 eV Total energy + Delta-G solvation = -2959.645544 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.81806 -40.52693 -38.45606 -34.63051 -32.11770 -31.07028 -30.43360 -30.10927 -26.14839 -23.87219 -23.00972 -22.71507 -21.40923 -19.02159 -17.78649 -17.25932 -17.05677 -16.76175 -15.80129 -15.26153 -14.57653 -14.43777 -14.33062 -13.70332 -13.52596 -13.48411 -13.13648 -13.00506 -12.48092 -12.29248 -11.97224 -11.78680 -10.97511 -10.72748 -10.29489 -10.05331 -9.88832 -9.76514 -9.59289 -9.19282 -9.04203 -9.02874 -8.57200 -8.41668 -6.10255 -4.09225 0.78855 0.86165 3.22096 3.31047 3.34138 3.44564 3.65259 4.01916 4.29242 4.36565 4.63135 4.68605 5.08199 5.18661 5.27024 5.39717 5.46502 5.55043 5.65435 5.67374 5.87117 5.90762 5.98489 6.20646 6.29228 6.36152 6.62122 6.67600 6.82147 7.07489 7.23179 7.29304 7.52998 7.62708 7.73140 8.49590 8.94340 9.52041 11.03238 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.037785 B = 0.005953 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.847370 B = 4702.158675 C = 4888.128297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.885 3.115 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.511 4.511 8 H 0.075 0.925 9 C 0.013 3.987 10 C -0.096 4.096 11 C 0.062 3.938 12 N -0.501 5.501 13 C 0.113 3.887 14 C -0.177 4.177 15 C 0.094 3.906 16 N -0.467 5.467 17 C 0.073 3.927 18 C 0.069 3.931 19 F -0.117 7.117 20 C 0.062 3.938 21 C -0.117 4.117 22 H 0.264 0.736 23 H 0.023 0.977 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.036 0.964 28 H 0.142 0.858 29 H 0.161 0.839 30 H 0.168 0.832 31 H 0.035 0.965 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.808 -2.856 -1.948 18.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.132 4.132 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.224 1.224 6 H -0.193 1.193 7 C -0.549 4.549 8 H 0.093 0.907 9 C -0.006 4.006 10 C -0.134 4.134 11 C -0.064 4.064 12 N -0.223 5.223 13 C 0.009 3.991 14 C -0.199 4.199 15 C -0.064 4.064 16 N -0.175 5.175 17 C -0.086 4.086 18 C 0.046 3.954 19 F -0.096 7.096 20 C -0.063 4.063 21 C -0.155 4.155 22 H 0.073 0.927 23 H 0.041 0.959 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.159 0.841 29 H 0.178 0.822 30 H 0.185 0.815 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 18.250 -3.050 -2.467 18.667 hybrid contribution -0.375 1.401 0.551 1.551 sum 17.876 -1.650 -1.916 18.054 Atomic orbital electron populations 1.69898 1.06262 1.26906 1.50836 1.25027 0.94676 0.98965 0.94548 0.86880 0.79827 0.83816 0.77912 1.20519 1.22428 1.19271 1.21023 0.88651 0.94507 1.50710 0.90738 1.19200 0.96925 0.91783 0.92676 1.21527 0.90455 0.99599 1.01841 1.22316 0.98826 0.97242 0.87992 1.59491 1.05794 1.16590 1.40423 1.19447 0.91219 0.95548 0.92862 1.22789 0.94915 1.01366 1.00865 1.22666 0.93159 0.95629 0.94913 1.67743 1.39204 1.08936 1.01661 1.22839 0.87952 0.98755 0.99032 1.18845 0.89391 0.99378 0.87780 1.91540 1.73605 1.84109 1.60326 1.22307 0.98904 0.85207 0.99929 1.22075 0.90491 1.00449 1.02483 0.92657 0.95863 0.91427 0.91728 0.91486 0.94610 0.84067 0.82165 0.81533 0.94702 0.91639 0.90861 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 2 C 0.07 1.96 5.45 -17.82 -0.10 1.87 16 3 Si 0.89 21.49 24.37 -169.99 -4.14 17.34 16 4 H -0.28 -6.59 6.89 56.52 0.39 -6.20 16 5 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.27 -6.15 6.53 56.52 0.37 -5.78 16 7 C -0.51 -14.02 9.14 -34.44 -0.31 -14.33 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C 0.01 0.29 1.75 -91.65 -0.16 0.13 16 10 C -0.10 -1.85 5.32 -26.65 -0.14 -1.99 16 11 C 0.06 1.00 5.13 -3.83 -0.02 0.98 16 12 N -0.50 -8.28 4.52 -170.88 -0.77 -9.05 16 13 C 0.11 1.62 4.70 -83.50 -0.39 1.22 16 14 C -0.18 -2.11 8.81 -39.26 -0.35 -2.46 16 15 C 0.09 1.00 11.17 -17.60 -0.20 0.80 16 16 N -0.47 -5.56 10.36 -13.30 -0.14 -5.70 16 17 C 0.07 0.84 11.16 -17.53 -0.20 0.64 16 18 C 0.07 0.94 7.35 -39.12 -0.29 0.65 16 19 F -0.12 -1.76 17.15 2.25 0.04 -1.72 16 20 C 0.06 1.08 5.18 -3.83 -0.02 1.06 16 21 C -0.12 -2.47 4.84 -26.65 -0.13 -2.60 16 22 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 23 H 0.02 0.54 7.19 -51.93 -0.37 0.16 16 24 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 27 H 0.04 0.54 7.41 -51.93 -0.38 0.15 16 28 H 0.14 1.53 7.30 -52.49 -0.38 1.15 16 29 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.17 1.46 8.06 -52.48 -0.42 1.03 16 31 H 0.03 0.58 7.64 -51.93 -0.40 0.18 16 32 H 0.07 1.07 8.11 -51.93 -0.42 0.65 16 33 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 34 H 0.05 1.18 3.38 -51.93 -0.18 1.00 16 LS Contribution 276.85 15.07 4.17 4.17 Total: -1.00 -30.17 276.85 -6.64 -36.81 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -4.27 Total: -1.29 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -2.30 Total: -14.02 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: -0.14 Total: -41.29 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.14 Total: 17.34 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.17 -6.64 -36.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603332812.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.669 kcal (2) G-P(sol) polarization free energy of solvation -30.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds