Wall clock time and date at job start Mon Mar 30 2020 18:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99653 * 2 1 4 4 H 1.48499 * 109.47269 * 270.00217 * 3 2 1 5 5 H 1.48501 * 109.47311 * 30.00258 * 3 2 1 6 6 H 1.48498 * 109.46945 * 150.00145 * 3 2 1 7 7 C 1.37876 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99524 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99967 * 179.97438 * 7 2 1 10 10 C 1.53123 * 109.52122 * 180.02562 * 9 7 2 11 11 C 1.53037 * 109.27640 * 177.56283 * 10 9 7 12 12 N 1.46849 * 109.52039 * 300.82059 * 11 10 9 13 13 C 1.39333 * 110.99846 * 185.84319 * 12 11 10 14 14 C 1.39394 * 120.86631 * 299.99935 * 13 12 11 15 15 C 1.37945 * 119.09412 * 179.97438 * 14 13 12 16 16 N 1.31969 * 120.88336 * 359.97438 * 15 14 13 17 17 C 1.32011 * 121.91816 * 0.02562 * 16 15 14 18 18 C 1.38081 * 120.81042 * 359.97438 * 17 16 15 19 19 F 1.35103 * 120.48399 * 180.02562 * 18 17 16 20 20 C 1.46845 * 111.20031 * 61.74352 * 12 11 10 21 21 C 1.53037 * 109.52433 * 298.25574 * 20 12 11 22 22 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.57447 * 59.84308 * 9 7 2 24 24 H 1.08996 * 109.49934 * 57.61903 * 10 9 7 25 25 H 1.09000 * 109.50165 * 297.50344 * 10 9 7 26 26 H 1.09000 * 109.45807 * 180.80554 * 11 10 9 27 27 H 1.08994 * 109.46354 * 60.83228 * 11 10 9 28 28 H 1.08002 * 120.45749 * 0.25051 * 14 13 12 29 29 H 1.08001 * 119.55802 * 179.97438 * 15 14 13 30 30 H 1.08003 * 119.59013 * 180.02562 * 17 16 15 31 31 H 1.09003 * 109.46146 * 58.27409 * 20 12 11 32 32 H 1.09006 * 109.46173 * 178.23868 * 20 12 11 33 33 H 1.08994 * 109.50329 * 299.24217 * 21 20 12 34 34 H 1.08995 * 109.50176 * 179.11477 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0047 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0234 -2.6371 0.0001 11 6 5.5525 -2.6310 -0.0619 12 7 5.9914 -1.9371 -1.2795 13 6 7.3731 -2.0271 -1.4349 14 6 8.2364 -1.5154 -0.4675 15 6 9.5982 -1.6248 -0.6583 16 7 10.0863 -2.2049 -1.7386 17 6 9.3035 -2.7021 -2.6780 18 6 7.9292 -2.6332 -2.5631 19 9 7.1342 -3.1447 -3.5283 20 6 5.5519 -0.5360 -1.2799 21 6 4.0228 -0.4795 -1.2542 22 1 -0.4850 0.8400 0.0004 23 1 3.8771 -0.6774 0.8874 24 1 3.6260 -3.1641 -0.8673 25 1 3.6981 -3.1385 0.9117 26 1 5.9194 -3.6573 -0.0764 27 1 5.9493 -2.1158 0.8127 28 1 7.8445 -1.0436 0.4215 29 1 10.2739 -1.2306 0.0862 30 1 9.7434 -3.1693 -3.5467 31 1 5.9489 -0.0306 -0.3994 32 1 5.9186 -0.0406 -2.1790 33 1 3.6255 -0.9727 -2.1413 34 1 3.6973 0.5606 -1.2386 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603332812.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:46 Heat of formation + Delta-G solvation = -21.245195 kcal Electronic energy + Delta-G solvation = -18368.976456 eV Core-core repulsion = 15408.458970 eV Total energy + Delta-G solvation = -2960.517486 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.118 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.86130 -41.55153 -39.70831 -36.20386 -34.02017 -31.95813 -31.89139 -31.39704 -27.84007 -25.00563 -24.25034 -24.08642 -22.84101 -20.58376 -18.85668 -18.82499 -18.25707 -18.08798 -16.86541 -16.75717 -15.87759 -15.83378 -15.34273 -15.18306 -14.87003 -14.62526 -14.52169 -14.42119 -14.08988 -13.65574 -13.42247 -13.16095 -12.74538 -12.28511 -12.19829 -11.75123 -11.50806 -11.05407 -11.01593 -10.71225 -10.68592 -10.53656 -9.97930 -9.62935 -8.29875 -6.33745 -0.10082 -0.07599 1.29555 1.33900 1.44786 2.31737 2.51504 2.57408 3.05223 3.07785 3.47968 3.77016 3.77450 3.91591 4.02001 4.14735 4.26916 4.38072 4.44264 4.46676 4.56737 4.66855 4.78614 4.82308 4.87459 4.95938 5.04932 5.18592 5.46314 5.50144 5.65333 5.72808 5.84493 6.18953 6.31626 6.73565 6.77264 7.31518 8.87381 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.037785 B = 0.005953 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.847370 B = 4702.158675 C = 4888.128297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.009 3.991 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.299 1.299 6 H -0.240 1.240 7 C -0.518 4.518 8 H 0.030 0.970 9 C 0.013 3.987 10 C -0.093 4.093 11 C 0.072 3.928 12 N -0.516 5.516 13 C 0.094 3.906 14 C -0.173 4.173 15 C 0.104 3.896 16 N -0.477 5.477 17 C 0.082 3.918 18 C 0.049 3.951 19 F -0.133 7.133 20 C 0.071 3.929 21 C -0.115 4.115 22 H 0.265 0.735 23 H 0.028 0.972 24 H 0.047 0.953 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.156 0.844 29 H 0.196 0.804 30 H 0.191 0.809 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.511 -1.881 -1.418 21.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.188 4.188 3 Si 0.776 3.224 4 H -0.194 1.194 5 H -0.227 1.227 6 H -0.163 1.163 7 C -0.556 4.556 8 H 0.049 0.951 9 C -0.006 4.006 10 C -0.131 4.131 11 C -0.054 4.054 12 N -0.238 5.238 13 C -0.009 4.009 14 C -0.195 4.195 15 C -0.053 4.053 16 N -0.186 5.186 17 C -0.076 4.076 18 C 0.026 3.974 19 F -0.111 7.111 20 C -0.055 4.055 21 C -0.152 4.152 22 H 0.074 0.926 23 H 0.047 0.953 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.073 0.927 28 H 0.174 0.826 29 H 0.212 0.788 30 H 0.208 0.792 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 21.987 -2.099 -1.941 22.172 hybrid contribution -1.542 0.983 0.389 1.870 sum 20.445 -1.115 -1.552 20.534 Atomic orbital electron populations 1.70065 1.08351 1.27986 1.52936 1.25934 0.95426 1.03160 0.94257 0.85834 0.79396 0.78533 0.78660 1.19430 1.22731 1.16328 1.21380 0.91618 0.92849 1.49708 0.95121 1.19158 0.93482 0.94291 0.93645 1.21409 0.93341 0.97208 1.01098 1.22179 0.95820 0.98567 0.88829 1.59297 1.07842 1.16012 1.40696 1.19504 0.90132 0.97222 0.94071 1.22908 0.95096 1.00915 1.00583 1.23216 0.93237 0.94007 0.94825 1.67860 1.39292 1.09275 1.02162 1.23173 0.87046 0.97820 0.99575 1.19096 0.90117 1.00440 0.87735 1.91500 1.74138 1.84532 1.60963 1.22137 0.95689 0.86332 1.01323 1.21900 0.93678 0.99207 1.00464 0.92633 0.95345 0.93405 0.91582 0.89963 0.92727 0.82601 0.78753 0.79223 0.92988 0.90501 0.92861 0.93670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 2 C 0.01 0.51 5.45 84.65 0.46 0.97 16 3 Si 0.95 44.07 24.37 68.60 1.67 45.74 16 4 H -0.27 -11.94 6.89 99.48 0.69 -11.25 16 5 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 6 H -0.24 -9.97 6.53 99.48 0.65 -9.32 16 7 C -0.52 -29.34 9.14 25.60 0.23 -29.11 16 8 H 0.03 1.94 7.99 -2.91 -0.02 1.91 16 9 C 0.01 0.59 1.75 -11.46 -0.02 0.57 16 10 C -0.09 -3.53 5.32 30.65 0.16 -3.37 16 11 C 0.07 2.14 5.13 86.33 0.44 2.58 16 12 N -0.52 -15.88 4.52 -694.54 -3.14 -19.02 16 13 C 0.09 2.41 4.70 38.56 0.18 2.59 16 14 C -0.17 -3.39 8.81 22.48 0.20 -3.19 16 15 C 0.10 1.74 11.17 84.60 0.95 2.69 16 16 N -0.48 -9.56 10.36 -195.98 -2.03 -11.59 16 17 C 0.08 1.65 11.16 84.63 0.94 2.60 16 18 C 0.05 1.22 7.35 22.57 0.17 1.39 16 19 F -0.13 -3.85 17.15 44.97 0.77 -3.08 16 20 C 0.07 2.27 5.18 86.33 0.45 2.72 16 21 C -0.11 -4.69 4.84 30.65 0.15 -4.54 16 22 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 23 H 0.03 1.25 7.19 -2.39 -0.02 1.23 16 24 H 0.05 1.97 8.14 -2.39 -0.02 1.96 16 25 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.08 2.22 8.11 -2.39 -0.02 2.20 16 27 H 0.05 1.44 7.41 -2.39 -0.02 1.42 16 28 H 0.16 2.59 7.30 -2.91 -0.02 2.57 16 29 H 0.20 1.85 8.06 -2.91 -0.02 1.83 16 30 H 0.19 2.75 8.06 -2.91 -0.02 2.73 16 31 H 0.05 1.49 7.64 -2.39 -0.02 1.48 16 32 H 0.08 2.29 8.11 -2.38 -0.02 2.27 16 33 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.05 1.91 3.38 -2.39 -0.01 1.90 16 Total: -1.00 -67.33 276.85 2.90 -64.43 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 1.02 Total: 7.26 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: 4.31 Total: -24.12 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -4.87 Total: -90.23 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.77 Total: -3.08 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.67 Total: 45.74 kcal Total: -67.33 2.90 -64.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603332812.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.182 kcal (2) G-P(sol) polarization free energy of solvation -67.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds