Wall clock time and date at job start Mon Mar 30 2020 18:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99779 * 2 1 4 4 H 1.48500 * 109.47036 * 269.99441 * 3 2 1 5 5 H 1.48492 * 109.47221 * 29.99692 * 3 2 1 6 6 H 1.48504 * 109.46957 * 149.99926 * 3 2 1 7 7 C 1.37874 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00115 * 173.70112 * 7 2 1 9 9 C 1.50702 * 119.99978 * 353.70465 * 7 2 1 10 10 C 1.53005 * 115.55009 * 86.10942 * 9 7 2 11 11 O 1.45196 * 109.47229 * 65.10433 * 10 9 7 12 12 C 1.34234 * 117.00078 * 179.97438 * 11 10 9 13 13 O 1.20822 * 119.99477 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99995 * 179.97438 * 12 11 10 15 15 H 1.08997 * 115.54960 * 325.58349 * 14 12 11 16 16 C 1.53006 * 117.51664 * 111.28883 * 14 12 11 17 17 C 1.52998 * 59.99849 * 107.47739 * 16 14 12 18 18 H 1.09007 * 117.52005 * 252.51340 * 17 16 14 19 19 C 1.53003 * 117.49833 * 107.48972 * 17 16 14 20 20 C 1.53002 * 117.50023 * 179.97438 * 19 17 16 21 21 C 1.52997 * 59.99958 * 252.51294 * 20 19 17 22 22 C 1.52998 * 117.49907 * 231.77644 * 9 7 2 23 23 C 1.52995 * 117.49905 * 300.43568 * 9 7 2 24 24 H 0.97000 * 120.00542 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.46831 * 305.10426 * 10 9 7 26 26 H 1.08996 * 109.47028 * 185.10932 * 10 9 7 27 27 H 1.08990 * 117.49611 * 214.97107 * 16 14 12 28 28 H 1.08997 * 117.49471 * 359.97438 * 16 14 12 29 29 H 1.09002 * 115.54567 * 325.70969 * 19 17 16 30 30 H 1.08993 * 117.49640 * 0.02562 * 20 19 17 31 31 H 1.08998 * 117.49315 * 145.01740 * 20 19 17 32 32 H 1.09007 * 117.49780 * 252.50791 * 21 20 19 33 33 H 1.09000 * 117.51920 * 107.48260 * 21 20 19 34 34 H 1.09006 * 117.50346 * 215.00266 * 22 9 7 35 35 H 1.09001 * 117.50121 * 0.02562 * 22 9 7 36 36 H 1.09001 * 117.49923 * 359.97438 * 23 9 7 37 37 H 1.09002 * 117.49733 * 144.99771 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0795 -1.1969 -0.1021 9 6 1.2578 -2.4951 0.1442 10 6 0.7192 -3.0940 -1.1566 11 8 1.8299 -3.4658 -2.0147 12 6 1.5260 -4.0106 -3.2032 13 8 0.3702 -4.1710 -3.5164 14 6 2.6265 -4.4211 -4.1474 15 1 3.5155 -3.7905 -4.1357 16 6 2.8254 -5.9182 -4.3931 17 6 2.2154 -5.0380 -5.4858 18 1 1.1490 -5.1469 -5.6835 19 6 3.0837 -4.7225 -6.7055 20 6 2.4735 -3.8427 -7.7985 21 6 2.6729 -5.3397 -8.0438 22 6 1.7340 -3.4673 1.2254 23 6 0.4253 -2.6956 1.4121 24 1 -0.4851 0.8400 -0.0004 25 1 0.0975 -2.3574 -1.6657 26 1 0.1232 -3.9781 -0.9302 27 1 3.8451 -6.2724 -4.5430 28 1 2.1604 -6.6064 -3.8714 29 1 4.1501 -4.6136 -6.5078 30 1 1.4538 -3.4884 -7.6485 31 1 3.1385 -3.1543 -8.3200 32 1 3.4690 -5.6362 -8.7268 33 1 1.7843 -5.9709 -8.0553 34 1 1.6636 -4.5335 1.0101 35 1 2.5871 -3.1656 1.8332 36 1 0.4180 -1.8866 2.1426 37 1 -0.5061 -3.2541 1.3195 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751854156.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:00 Heat of formation + Delta-G solvation = -19.055068 kcal Electronic energy + Delta-G solvation = -17906.482728 eV Core-core repulsion = 15037.227767 eV Total energy + Delta-G solvation = -2869.254961 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.04295 -38.25041 -36.74910 -35.41094 -34.84908 -31.95461 -27.32503 -25.49126 -24.44496 -23.50376 -22.42091 -21.17759 -20.37102 -19.70322 -19.23798 -17.16425 -16.60280 -15.90346 -15.52418 -15.39108 -14.67059 -14.46302 -13.85972 -13.47533 -13.02235 -12.75369 -12.12948 -11.91843 -11.75312 -11.62238 -11.43012 -11.31812 -10.97989 -10.94201 -10.85705 -10.52652 -10.28651 -10.16756 -9.98793 -9.83936 -9.69841 -9.48359 -8.81873 -8.46220 -8.20730 -6.06583 -4.11809 2.58811 3.18759 3.29258 3.35975 3.39627 3.52314 4.09883 4.39194 4.42822 4.64925 4.75804 4.95086 5.10456 5.15569 5.20068 5.23475 5.29510 5.50540 5.51936 5.65471 5.77092 5.94578 5.97832 5.98915 6.00826 6.22069 6.25060 6.33672 6.53404 6.66560 6.73843 7.03182 7.26751 7.36905 7.48017 7.86766 8.36876 8.48246 8.89919 9.54037 11.02869 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023718 B = 0.005167 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.242193 B = 5417.864292 C = 6106.472297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.069 3.931 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.489 4.489 8 H 0.063 0.937 9 C 0.037 3.963 10 C 0.116 3.884 11 O -0.332 6.332 12 C 0.483 3.517 13 O -0.525 6.525 14 C -0.156 4.156 15 H 0.134 0.866 16 C -0.143 4.143 17 C -0.092 4.092 18 H 0.118 0.882 19 C -0.125 4.125 20 C -0.176 4.176 21 C -0.175 4.175 22 C -0.205 4.205 23 C -0.144 4.144 24 H 0.261 0.739 25 H 0.075 0.925 26 H 0.038 0.962 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.505 -9.638 -10.654 15.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.527 4.527 8 H 0.081 0.919 9 C 0.036 3.964 10 C 0.042 3.958 11 O -0.247 6.247 12 C 0.327 3.673 13 O -0.416 6.416 14 C -0.175 4.175 15 H 0.152 0.848 16 C -0.180 4.180 17 C -0.110 4.110 18 H 0.136 0.864 19 C -0.143 4.143 20 C -0.213 4.213 21 C -0.212 4.212 22 C -0.242 4.242 23 C -0.182 4.182 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.056 0.944 27 H 0.126 0.874 28 H 0.119 0.881 29 H 0.126 0.874 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.982 -9.526 -10.680 15.154 hybrid contribution 0.188 1.058 0.089 1.079 sum 5.170 -8.467 -10.591 14.512 Atomic orbital electron populations 1.70000 1.05924 1.26705 1.49215 1.25015 0.94852 0.99092 0.94491 0.86586 0.79975 0.83242 0.78202 1.20618 1.21149 1.19708 1.20384 0.93103 0.88331 1.50895 0.91867 1.18779 0.98986 0.94236 0.84369 1.22919 0.85438 0.96866 0.90537 1.86508 1.41325 1.70369 1.26495 1.22435 0.88631 0.74385 0.81851 1.90596 1.21959 1.52752 1.76269 1.21782 1.00018 0.98821 0.96907 0.84775 1.23044 1.03012 0.90735 1.01210 1.21870 1.00028 1.01782 0.87326 0.86395 1.21721 0.98754 1.05312 0.88563 1.22969 1.02712 0.93384 1.02264 1.22936 1.03462 0.96248 0.98523 1.23010 0.98551 0.95703 1.06969 1.22533 0.92282 1.01205 1.02157 0.92907 0.90642 0.94369 0.87380 0.88059 0.87441 0.88459 0.88657 0.88748 0.88658 0.91570 0.90043 0.89389 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.09 12.88 55.43 0.71 -24.38 16 2 C 0.07 1.89 5.38 -17.82 -0.10 1.79 16 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.49 -13.49 8.78 -34.44 -0.30 -13.79 16 8 H 0.06 1.75 7.82 -52.49 -0.41 1.34 16 9 C 0.04 0.93 1.62 -155.66 -0.25 0.68 16 10 C 0.12 2.81 5.29 37.16 0.20 3.01 16 11 O -0.33 -7.53 10.16 -39.27 -0.40 -7.92 16 12 C 0.48 9.63 7.74 36.00 0.28 9.91 16 13 O -0.52 -11.58 16.01 -18.75 -0.30 -11.88 16 14 C -0.16 -2.30 6.02 -91.77 -0.55 -2.85 16 15 H 0.13 1.81 8.14 -51.93 -0.42 1.39 16 16 C -0.14 -1.65 9.96 -26.73 -0.27 -1.92 16 17 C -0.09 -1.14 5.36 -90.62 -0.49 -1.63 16 18 H 0.12 1.63 7.67 -51.93 -0.40 1.23 16 19 C -0.13 -1.28 5.85 -90.62 -0.53 -1.81 16 20 C -0.18 -1.74 10.25 -26.73 -0.27 -2.01 16 21 C -0.17 -1.53 10.25 -26.73 -0.27 -1.80 16 22 C -0.21 -4.52 9.96 -26.70 -0.27 -4.79 16 23 C -0.14 -3.39 9.37 -26.70 -0.25 -3.64 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 26 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 27 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 0.69 8.14 -51.92 -0.42 0.26 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 36 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 37 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 323.45 15.07 4.87 4.87 Total: -1.00 -30.12 323.45 -9.07 -39.18 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -5.86 Total: 2.83 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -3.07 Total: -18.86 kcal Atomic # 7 Polarization: -25.09 SS G_CDS: 0.71 Total: -24.38 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.70 Total: -19.81 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.12 -9.07 -39.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751854156.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.126 kcal (2) G-P(sol) polarization free energy of solvation -30.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds