Wall clock time and date at job start Mon Mar 30 2020 18:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99779 * 2 1 4 4 H 1.48500 * 109.47036 * 269.99441 * 3 2 1 5 5 H 1.48492 * 109.47221 * 29.99692 * 3 2 1 6 6 H 1.48504 * 109.46957 * 149.99926 * 3 2 1 7 7 C 1.37874 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00115 * 173.70112 * 7 2 1 9 9 C 1.50702 * 119.99978 * 353.70465 * 7 2 1 10 10 C 1.53005 * 115.55009 * 86.10942 * 9 7 2 11 11 O 1.45196 * 109.47229 * 65.10433 * 10 9 7 12 12 C 1.34234 * 117.00078 * 179.97438 * 11 10 9 13 13 O 1.20822 * 119.99477 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99995 * 179.97438 * 12 11 10 15 15 H 1.08997 * 115.54960 * 325.58349 * 14 12 11 16 16 C 1.53006 * 117.51664 * 111.28883 * 14 12 11 17 17 C 1.52998 * 59.99849 * 107.47739 * 16 14 12 18 18 H 1.09007 * 117.52005 * 252.51340 * 17 16 14 19 19 C 1.53003 * 117.49833 * 107.48972 * 17 16 14 20 20 C 1.53002 * 117.50023 * 179.97438 * 19 17 16 21 21 C 1.52997 * 59.99958 * 252.51294 * 20 19 17 22 22 C 1.52998 * 117.49907 * 231.77644 * 9 7 2 23 23 C 1.52995 * 117.49905 * 300.43568 * 9 7 2 24 24 H 0.97000 * 120.00542 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.46831 * 305.10426 * 10 9 7 26 26 H 1.08996 * 109.47028 * 185.10932 * 10 9 7 27 27 H 1.08990 * 117.49611 * 214.97107 * 16 14 12 28 28 H 1.08997 * 117.49471 * 359.97438 * 16 14 12 29 29 H 1.09002 * 115.54567 * 325.70969 * 19 17 16 30 30 H 1.08993 * 117.49640 * 0.02562 * 20 19 17 31 31 H 1.08998 * 117.49315 * 145.01740 * 20 19 17 32 32 H 1.09007 * 117.49780 * 252.50791 * 21 20 19 33 33 H 1.09000 * 117.51920 * 107.48260 * 21 20 19 34 34 H 1.09006 * 117.50346 * 215.00266 * 22 9 7 35 35 H 1.09001 * 117.50121 * 0.02562 * 22 9 7 36 36 H 1.09001 * 117.49923 * 359.97438 * 23 9 7 37 37 H 1.09002 * 117.49733 * 144.99771 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0795 -1.1969 -0.1021 9 6 1.2578 -2.4951 0.1442 10 6 0.7192 -3.0940 -1.1566 11 8 1.8299 -3.4658 -2.0147 12 6 1.5260 -4.0106 -3.2032 13 8 0.3702 -4.1710 -3.5164 14 6 2.6265 -4.4211 -4.1474 15 1 3.5155 -3.7905 -4.1357 16 6 2.8254 -5.9182 -4.3931 17 6 2.2154 -5.0380 -5.4858 18 1 1.1490 -5.1469 -5.6835 19 6 3.0837 -4.7225 -6.7055 20 6 2.4735 -3.8427 -7.7985 21 6 2.6729 -5.3397 -8.0438 22 6 1.7340 -3.4673 1.2254 23 6 0.4253 -2.6956 1.4121 24 1 -0.4851 0.8400 -0.0004 25 1 0.0975 -2.3574 -1.6657 26 1 0.1232 -3.9781 -0.9302 27 1 3.8451 -6.2724 -4.5430 28 1 2.1604 -6.6064 -3.8714 29 1 4.1501 -4.6136 -6.5078 30 1 1.4538 -3.4884 -7.6485 31 1 3.1385 -3.1543 -8.3200 32 1 3.4690 -5.6362 -8.7268 33 1 1.7843 -5.9709 -8.0553 34 1 1.6636 -4.5335 1.0101 35 1 2.5871 -3.1656 1.8332 36 1 0.4180 -1.8866 2.1426 37 1 -0.5061 -3.2541 1.3195 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751854156.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:00 Heat of formation + Delta-G solvation = -33.335174 kcal Electronic energy + Delta-G solvation = -17907.101960 eV Core-core repulsion = 15037.227767 eV Total energy + Delta-G solvation = -2869.874193 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.58812 -39.40754 -38.43287 -37.00519 -36.00328 -34.04287 -29.11253 -27.49650 -25.83460 -24.47309 -23.16154 -22.99332 -21.49591 -21.22328 -20.91069 -18.68061 -18.42963 -17.33586 -17.27490 -16.60863 -16.48261 -15.85195 -15.28082 -14.99827 -14.40042 -14.09217 -13.85908 -13.59653 -13.33404 -12.92675 -12.84852 -12.53284 -12.38645 -12.30067 -12.20108 -12.10676 -11.91052 -11.70799 -11.66424 -11.39368 -11.02463 -10.79625 -10.54752 -10.46565 -10.10367 -8.15800 -6.27376 1.08921 1.40543 1.41706 1.52406 1.72319 2.41037 2.53005 3.12785 3.17881 3.36848 3.52361 3.64126 3.79015 4.01339 4.10589 4.18656 4.25665 4.31053 4.34657 4.36937 4.44413 4.62836 4.74598 4.81815 4.83055 4.94362 4.95519 5.05514 5.13508 5.15761 5.29576 5.35046 5.42792 5.56165 5.67272 5.72812 6.33498 6.77908 6.80838 7.41592 8.93257 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023718 B = 0.005167 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.242193 B = 5417.864292 C = 6106.472297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.022 3.978 3 Si 0.954 3.046 4 H -0.279 1.279 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.505 4.505 8 H 0.055 0.945 9 C 0.002 3.998 10 C 0.128 3.872 11 O -0.344 6.344 12 C 0.477 3.523 13 O -0.555 6.555 14 C -0.178 4.178 15 H 0.148 0.852 16 C -0.117 4.117 17 C -0.086 4.086 18 H 0.098 0.902 19 C -0.132 4.132 20 C -0.190 4.190 21 C -0.158 4.158 22 C -0.176 4.176 23 C -0.145 4.145 24 H 0.261 0.739 25 H 0.037 0.963 26 H 0.048 0.952 27 H 0.144 0.856 28 H 0.098 0.902 29 H 0.126 0.874 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.516 -10.727 -11.475 17.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.178 4.178 3 Si 0.779 3.221 4 H -0.205 1.205 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.543 4.543 8 H 0.074 0.926 9 C 0.001 3.999 10 C 0.054 3.946 11 O -0.259 6.259 12 C 0.323 3.677 13 O -0.447 6.447 14 C -0.197 4.197 15 H 0.166 0.834 16 C -0.153 4.153 17 C -0.104 4.104 18 H 0.116 0.884 19 C -0.150 4.150 20 C -0.227 4.227 21 C -0.195 4.195 22 C -0.213 4.213 23 C -0.183 4.183 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.162 0.838 28 H 0.117 0.883 29 H 0.143 0.857 30 H 0.098 0.902 31 H 0.126 0.874 32 H 0.134 0.866 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.007 -10.628 -11.504 17.158 hybrid contribution -0.470 1.344 0.293 1.453 sum 6.537 -9.285 -11.211 15.957 Atomic orbital electron populations 1.70109 1.07219 1.27375 1.50135 1.25747 0.95618 1.02259 0.94183 0.85622 0.79025 0.79286 0.78158 1.20484 1.20691 1.18804 1.20637 0.92965 0.89819 1.50879 0.92632 1.18887 1.00741 0.94889 0.85358 1.22532 0.85619 0.96105 0.90331 1.86515 1.40671 1.71015 1.27703 1.23504 0.89781 0.73103 0.81339 1.90572 1.23647 1.53912 1.76570 1.21908 0.98927 1.01616 0.97242 0.83400 1.23248 1.04798 0.88201 0.99073 1.21904 0.99652 1.01220 0.87616 0.88433 1.21774 0.99119 1.06140 0.87939 1.23029 1.02145 0.94686 1.02859 1.23023 1.03913 0.95075 0.97464 1.23020 0.97639 0.96399 1.04265 1.22472 0.93640 1.01296 1.00861 0.92973 0.94446 0.93420 0.83814 0.88319 0.85652 0.90173 0.87416 0.86551 0.88744 0.89088 0.89451 0.91055 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.91 12.88 21.45 0.28 -52.64 16 2 C 0.02 1.23 5.38 84.65 0.46 1.69 16 3 Si 0.95 43.74 29.54 68.60 2.03 45.76 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.51 -28.15 8.78 25.60 0.22 -27.93 16 8 H 0.06 3.09 7.82 -2.91 -0.02 3.07 16 9 C 0.00 0.09 1.62 -52.93 -0.09 0.00 16 10 C 0.13 6.38 5.29 71.98 0.38 6.76 16 11 O -0.34 -15.79 10.16 -51.45 -0.52 -16.31 16 12 C 0.48 19.24 7.74 71.24 0.55 19.79 16 13 O -0.55 -25.22 16.01 21.97 0.35 -24.87 16 14 C -0.18 -5.05 6.02 -11.54 -0.07 -5.12 16 15 H 0.15 3.75 8.14 -2.39 -0.02 3.74 16 16 C -0.12 -2.39 9.96 30.60 0.30 -2.08 16 17 C -0.09 -2.01 5.36 -10.79 -0.06 -2.07 16 18 H 0.10 2.70 7.67 -2.38 -0.02 2.68 16 19 C -0.13 -2.37 5.85 -10.79 -0.06 -2.43 16 20 C -0.19 -3.48 10.25 30.59 0.31 -3.17 16 21 C -0.16 -2.34 10.25 30.59 0.31 -2.03 16 22 C -0.18 -7.53 9.96 30.62 0.30 -7.23 16 23 C -0.15 -6.81 9.37 30.62 0.29 -6.52 16 24 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 25 H 0.04 2.11 8.14 -2.38 -0.02 2.09 16 26 H 0.05 2.22 8.08 -2.39 -0.02 2.20 16 27 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.12 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.09 3.43 8.14 -2.38 -0.02 3.41 16 35 H 0.09 3.61 8.14 -2.39 -0.02 3.59 16 36 H 0.07 3.54 8.14 -2.39 -0.02 3.53 16 37 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 Total: -1.00 -65.98 323.45 6.03 -59.95 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 1.04 Total: 18.44 kcal Atomic # 6 Polarization: -33.19 SS G_CDS: 2.86 Total: -30.33 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.28 Total: -52.64 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -0.17 Total: -41.18 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -65.98 6.03 -59.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751854156.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.615 kcal (2) G-P(sol) polarization free energy of solvation -65.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds