Wall clock time and date at job start Mon Mar 30 2020 18:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 119.99831 * 2 1 4 4 H 1.48507 * 109.47108 * 270.00005 * 3 2 1 5 5 H 1.48500 * 109.47121 * 30.00058 * 3 2 1 6 6 H 1.48501 * 109.46780 * 150.00395 * 3 2 1 7 7 C 1.37875 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00475 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99821 * 179.97438 * 7 2 1 10 10 C 1.53124 * 109.52566 * 180.02562 * 9 7 2 11 11 C 1.53032 * 109.28012 * 177.55932 * 10 9 7 12 12 N 1.46846 * 109.52260 * 300.82015 * 11 10 9 13 13 C 1.39003 * 111.00085 * 185.84078 * 12 11 10 14 14 C 1.39067 * 119.69027 * 179.72668 * 13 12 11 15 15 C 1.38379 * 119.15671 * 179.79659 * 14 13 12 16 16 C 1.38760 * 118.52959 * 0.46896 * 15 14 13 17 17 C 1.38366 * 119.30988 * 359.75296 * 16 15 14 18 18 F 1.35100 * 119.60342 * 179.97438 * 17 16 15 19 19 N 1.32136 * 120.79361 * 0.02562 * 17 16 15 20 20 C 1.46846 * 111.19997 * 61.74591 * 12 11 10 21 21 C 1.53040 * 109.51964 * 298.25655 * 20 12 11 22 22 H 0.97005 * 120.00585 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.57949 * 59.84106 * 9 7 2 24 24 H 1.08999 * 109.49853 * 57.61556 * 10 9 7 25 25 H 1.08996 * 109.49839 * 297.50587 * 10 9 7 26 26 H 1.09001 * 109.46314 * 180.80749 * 11 10 9 27 27 H 1.08997 * 109.46418 * 60.83870 * 11 10 9 28 28 H 1.08003 * 120.42070 * 359.97438 * 14 13 12 29 29 H 1.07993 * 120.73535 * 180.22148 * 15 14 13 30 30 H 1.08003 * 120.34234 * 179.77591 * 16 15 14 31 31 H 1.08996 * 109.46231 * 58.27402 * 20 12 11 32 32 H 1.09004 * 109.46418 * 178.24241 * 20 12 11 33 33 H 1.09004 * 109.50602 * 299.23671 * 21 20 12 34 34 H 1.08998 * 109.50366 * 179.12192 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0044 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5114 -1.1940 0.0000 10 6 4.0232 -2.6372 0.0001 11 6 5.5523 -2.6311 -0.0620 12 7 5.9912 -1.9373 -1.2796 13 6 7.3696 -2.0270 -1.4346 14 6 7.9789 -1.4350 -2.5357 15 6 9.3524 -1.5276 -2.6769 16 6 10.0725 -2.2201 -1.7139 17 6 9.4019 -2.7892 -0.6458 18 9 10.0971 -3.4652 0.2949 19 7 8.0897 -2.6804 -0.5353 20 6 5.5518 -0.5361 -1.2800 21 6 4.0227 -0.4797 -1.2542 22 1 -0.4851 0.8400 0.0004 23 1 3.8770 -0.6775 0.8874 24 1 3.6259 -3.1642 -0.8673 25 1 3.6980 -3.1385 0.9116 26 1 5.9193 -3.6573 -0.0766 27 1 5.9493 -2.1159 0.8127 28 1 7.3880 -0.9073 -3.2697 29 1 9.8523 -1.0743 -3.5201 30 1 11.1452 -2.3135 -1.7971 31 1 5.9488 -0.0307 -0.3996 32 1 5.9184 -0.0407 -2.1791 33 1 3.6253 -0.9728 -2.1414 34 1 3.6971 0.5605 -1.2387 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781675444.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:10 Heat of formation + Delta-G solvation = 6.150281 kcal Electronic energy + Delta-G solvation = -18178.825060 eV Core-core repulsion = 15219.495531 eV Total energy + Delta-G solvation = -2959.329529 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.06084 -40.65096 -38.11161 -34.29160 -32.71380 -31.85541 -30.39170 -29.51294 -26.12707 -24.03849 -23.17154 -22.12116 -21.45389 -19.03765 -18.11419 -17.28673 -16.74434 -16.22219 -16.12694 -15.78558 -14.63866 -14.49179 -14.21603 -13.75748 -13.36428 -13.30928 -12.99550 -12.77039 -12.41829 -12.28323 -12.00329 -11.67124 -11.01633 -10.69648 -10.23170 -10.18985 -10.07565 -9.79983 -9.71536 -9.54467 -9.14640 -8.98603 -8.56270 -8.03981 -6.09345 -4.08257 0.88266 1.06015 3.20376 3.23924 3.32727 3.36305 3.52092 3.94518 4.37269 4.43861 4.81841 4.93835 5.02010 5.18745 5.36767 5.47478 5.57703 5.61412 5.72959 5.83452 5.91913 5.97608 6.06659 6.24183 6.32152 6.39150 6.59343 6.65714 6.83132 6.98149 7.19818 7.26660 7.52856 7.72077 7.74954 8.50921 8.95528 9.52923 11.04163 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.040530 B = 0.005552 C = 0.005211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.683707 B = 5041.722283 C = 5372.042739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.884 3.116 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.510 4.510 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.101 4.101 11 C 0.065 3.935 12 N -0.468 5.468 13 C 0.360 3.640 14 C -0.203 4.203 15 C -0.027 4.027 16 C -0.236 4.236 17 C 0.333 3.667 18 F -0.116 7.116 19 N -0.554 5.554 20 C 0.059 3.941 21 C -0.119 4.119 22 H 0.263 0.737 23 H 0.025 0.975 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.046 0.954 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.143 0.857 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.884 -1.402 -5.245 19.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.132 4.132 3 Si 0.714 3.286 4 H -0.205 1.205 5 H -0.224 1.224 6 H -0.192 1.192 7 C -0.548 4.548 8 H 0.093 0.907 9 C -0.008 4.008 10 C -0.139 4.139 11 C -0.061 4.061 12 N -0.183 5.183 13 C 0.127 3.873 14 C -0.226 4.226 15 C -0.053 4.053 16 C -0.259 4.259 17 C 0.179 3.821 18 F -0.095 7.095 19 N -0.275 5.275 20 C -0.066 4.066 21 C -0.157 4.157 22 H 0.073 0.927 23 H 0.043 0.957 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.163 0.837 29 H 0.162 0.838 30 H 0.160 0.840 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 17.999 -1.909 -4.875 18.745 hybrid contribution 1.234 1.422 0.031 1.883 sum 19.233 -0.488 -4.844 19.840 Atomic orbital electron populations 1.69893 1.06268 1.26899 1.50856 1.25026 0.94673 0.98956 0.94571 0.86900 0.79962 0.83841 0.77895 1.20471 1.22389 1.19182 1.21026 0.88622 0.94517 1.50658 0.90711 1.19233 0.96954 0.91957 0.92676 1.21602 0.90978 0.99401 1.01891 1.22171 0.97441 0.98464 0.88030 1.59115 1.04554 1.15926 1.38751 1.19734 0.89213 0.89482 0.88893 1.21653 0.95356 1.05717 0.99903 1.21277 0.93210 0.93719 0.97053 1.21580 1.01969 1.05732 0.96643 1.17903 0.86599 0.91597 0.86050 1.91613 1.76715 1.77336 1.63883 1.66917 1.06411 1.23575 1.30566 1.22449 0.99255 0.84008 1.00849 1.22124 0.90125 1.00776 1.02673 0.92662 0.95703 0.91654 0.91590 0.90446 0.93595 0.83723 0.83772 0.83964 0.93913 0.90685 0.90725 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 2 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 3 Si 0.88 21.33 24.37 -169.99 -4.14 17.19 16 4 H -0.28 -6.43 6.89 56.52 0.39 -6.04 16 5 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.27 -6.16 6.53 56.52 0.37 -5.79 16 7 C -0.51 -14.01 9.14 -34.44 -0.31 -14.33 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C 0.01 0.24 1.75 -91.65 -0.16 0.08 16 10 C -0.10 -2.00 5.32 -26.65 -0.14 -2.14 16 11 C 0.07 1.16 4.65 -3.84 -0.02 1.14 16 12 N -0.47 -7.90 4.68 -173.24 -0.81 -8.71 16 13 C 0.36 5.50 6.40 -155.01 -0.99 4.51 16 14 C -0.20 -2.43 9.18 -39.22 -0.36 -2.79 16 15 C -0.03 -0.26 10.16 -39.34 -0.40 -0.66 16 16 C -0.24 -2.47 10.08 -39.34 -0.40 -2.86 16 17 C 0.33 4.57 8.40 -17.37 -0.15 4.43 16 18 F -0.12 -1.59 17.29 2.25 0.04 -1.55 16 19 N -0.55 -8.86 8.69 -12.78 -0.11 -8.98 16 20 C 0.06 1.00 5.25 -3.83 -0.02 0.98 16 21 C -0.12 -2.44 4.84 -26.65 -0.13 -2.57 16 22 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 23 H 0.02 0.59 7.19 -51.93 -0.37 0.22 16 24 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.08 1.34 7.70 -51.93 -0.40 0.94 16 27 H 0.05 0.84 8.11 -51.93 -0.42 0.42 16 28 H 0.15 1.50 7.16 -52.48 -0.38 1.12 16 29 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 30 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.06 6.68 -51.93 -0.35 0.71 16 33 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.06 1.21 3.38 -51.93 -0.18 1.03 16 LS Contribution 275.34 15.07 4.15 4.15 Total: -1.00 -30.23 275.34 -7.51 -37.73 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -4.23 Total: -1.01 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -3.18 Total: -12.35 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -0.15 Total: -44.16 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.14 Total: 17.19 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.23 -7.51 -37.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781675444.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.883 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds