Wall clock time and date at job start Mon Mar 30 2020 18:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31449 * 1 3 3 Si 1.86800 * 119.99925 * 2 1 4 4 H 1.48492 * 109.47487 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46870 * 119.99897 * 3 2 1 6 6 H 1.48508 * 109.46883 * 239.99707 * 3 2 1 7 7 C 1.38749 * 119.99465 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99603 * 180.02562 * 7 2 1 9 9 O 1.34914 * 120.00417 * 0.02562 * 7 2 1 10 10 C 1.34318 * 116.99862 * 179.97438 * 9 7 2 11 11 O 1.21204 * 120.00092 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99590 * 180.02562 * 10 9 7 13 13 C 1.52995 * 109.47499 * 60.00180 * 12 10 9 14 14 C 1.53005 * 109.47083 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.47396 * 59.99468 * 14 13 12 16 16 C 1.53000 * 109.47204 * 300.00064 * 15 14 13 17 17 C 1.53001 * 109.47151 * 300.00099 * 16 15 14 18 18 C 1.52995 * 109.47148 * 59.99867 * 17 16 15 19 19 C 1.53000 * 109.47204 * 300.00101 * 18 17 16 20 20 C 1.53001 * 109.46905 * 180.02562 * 12 10 9 21 21 C 1.52995 * 109.47119 * 60.00258 * 16 15 14 22 22 H 0.97001 * 119.99860 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47192 * 299.99260 * 13 12 10 24 24 H 1.08989 * 109.47606 * 59.99958 * 13 12 10 25 25 H 1.08997 * 109.46982 * 180.02562 * 14 13 12 26 26 H 1.08999 * 109.47156 * 180.02562 * 15 14 13 27 27 H 1.08999 * 109.47074 * 60.00166 * 15 14 13 28 28 H 1.09005 * 109.47067 * 179.97438 * 16 15 14 29 29 H 1.08999 * 109.47166 * 299.99782 * 17 16 15 30 30 H 1.08997 * 109.46861 * 180.02562 * 17 16 15 31 31 H 1.08996 * 109.47330 * 179.97438 * 18 17 16 32 32 H 1.09005 * 109.47067 * 180.02562 * 19 18 17 33 33 H 1.08999 * 109.46908 * 299.99960 * 19 18 17 34 34 H 1.09005 * 109.46932 * 299.99527 * 20 12 10 35 35 H 1.09002 * 109.47637 * 59.99628 * 20 12 10 36 36 H 1.09005 * 109.47472 * 180.02562 * 21 16 15 37 37 H 1.08999 * 109.47274 * 59.99827 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 1.2836 2.7465 -0.0006 5 1 3.1022 1.6964 1.2125 6 1 3.1023 1.6963 -1.2125 7 6 2.0081 -1.2017 0.0005 8 1 3.0882 -1.2017 0.0010 9 8 1.3335 -2.3700 0.0005 10 6 2.0651 -3.4965 0.0005 11 8 3.2755 -3.4331 0.0010 12 6 1.3808 -4.8392 0.0000 13 6 0.5072 -4.9659 -1.2496 14 6 -0.1880 -6.3289 -1.2498 15 6 -1.0626 -6.4556 -0.0009 16 6 -0.1889 -6.3289 1.2487 17 6 0.8645 -7.4386 1.2491 18 6 1.7391 -7.3119 0.0002 19 6 0.8653 -7.4386 -1.2494 20 6 2.4345 -5.9486 0.0007 21 6 0.5062 -4.9660 1.2490 22 1 -0.4850 -0.8401 -0.0004 23 1 -0.2436 -4.1757 -1.2497 24 1 1.1301 -4.8754 -2.1393 25 1 -0.8101 -6.4194 -2.1402 26 1 -1.5575 -7.4268 -0.0008 27 1 -1.8131 -5.6650 -0.0012 28 1 -0.8121 -6.4187 2.1385 29 1 0.3693 -8.4096 1.2489 30 1 1.4866 -7.3486 2.1395 31 1 2.4898 -8.1022 0.0006 32 1 1.4886 -7.3488 -2.1392 33 1 0.3702 -8.4096 -1.2495 34 1 3.0580 -5.8581 -0.8889 35 1 3.0567 -5.8582 0.8911 36 1 1.1290 -4.8758 2.1390 37 1 -0.2443 -4.1754 1.2487 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798241792.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:12 Heat of formation + Delta-G solvation = -121.714826 kcal Electronic energy + Delta-G solvation = -19634.044826 eV Core-core repulsion = 16760.338204 eV Total energy + Delta-G solvation = -2873.706622 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.39038 -38.68719 -35.31836 -32.69233 -32.49031 -32.35205 -31.90542 -25.75945 -25.75794 -24.99746 -22.74849 -21.30807 -21.28074 -19.63727 -17.87895 -17.43619 -16.21539 -15.21703 -14.59400 -14.37746 -14.23252 -14.20870 -13.86547 -13.74907 -13.16366 -13.06807 -12.92932 -12.47556 -12.25971 -12.25697 -11.09536 -10.97772 -10.76619 -10.75445 -10.68274 -10.60198 -10.58575 -10.34528 -10.22256 -10.07452 -9.70045 -9.50476 -9.47274 -8.76100 -8.47651 -6.69438 -4.05727 3.26379 3.31309 3.53654 3.56923 4.03322 4.44842 4.63735 4.66306 4.89939 5.18141 5.20593 5.28588 5.34787 5.36445 5.38547 5.47355 5.50085 5.55202 5.64699 5.80422 5.88725 5.92133 6.08860 6.09445 6.11642 6.21699 6.23157 6.30742 6.38999 6.41349 6.42647 6.60051 6.66338 6.70118 6.90651 7.67807 8.48053 8.57281 9.12007 9.83453 10.75641 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.039037 B = 0.006558 C = 0.006242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.092074 B = 4268.605913 C = 4484.588954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.013 3.987 3 Si 1.097 2.903 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.463 4.463 8 H 0.084 0.916 9 O -0.234 6.234 10 C 0.409 3.591 11 O -0.553 6.553 12 C -0.032 4.032 13 C -0.100 4.100 14 C -0.084 4.084 15 C -0.107 4.107 16 C -0.084 4.084 17 C -0.108 4.108 18 C -0.085 4.085 19 C -0.108 4.108 20 C -0.088 4.088 21 C -0.100 4.100 22 H 0.280 0.720 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.152 -14.400 -0.003 14.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.192 4.192 3 Si 0.921 3.079 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.539 4.539 8 H 0.102 0.898 9 O -0.142 6.142 10 C 0.255 3.745 11 O -0.449 6.449 12 C -0.033 4.033 13 C -0.138 4.138 14 C -0.102 4.102 15 C -0.145 4.145 16 C -0.102 4.102 17 C -0.145 4.145 18 C -0.104 4.104 19 C -0.145 4.145 20 C -0.125 4.125 21 C -0.138 4.138 22 H 0.089 0.911 23 H 0.094 0.906 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.066 -12.682 -0.002 12.849 hybrid contribution 0.370 -1.635 0.000 1.676 sum -1.695 -14.316 -0.002 14.416 Atomic orbital electron populations 1.70561 1.06540 1.31393 1.43350 1.26545 0.96782 1.01064 0.94810 0.83098 0.74390 0.73178 0.77207 1.19910 1.20793 1.20797 1.22087 0.93679 0.81520 1.56645 0.89785 1.83606 1.40343 1.14008 1.76226 1.23027 0.86476 0.86609 0.78352 1.90530 1.15799 1.87910 1.50687 1.20135 0.95763 0.90143 0.97246 1.21524 0.98732 0.97221 0.96291 1.21053 0.96375 0.94790 0.98013 1.21545 0.97393 1.01367 0.94187 1.21054 0.96378 0.94792 0.98011 1.21553 0.97231 0.98022 0.97702 1.21091 0.97031 0.97211 0.95041 1.21556 0.97233 0.98025 0.97696 1.21360 0.96189 0.91951 1.03020 1.21528 0.98728 0.97221 0.96297 0.91058 0.90644 0.91844 0.91112 0.92172 0.91681 0.91112 0.92163 0.92023 0.91198 0.92022 0.92162 0.91459 0.91457 0.91848 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.69 13.69 55.48 0.76 -25.93 16 2 C 0.01 0.37 5.49 -17.53 -0.10 0.28 16 3 Si 1.10 25.12 29.92 -169.99 -5.09 20.04 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.46 -14.12 9.64 30.92 0.30 -13.82 16 8 H 0.08 2.63 6.86 -52.48 -0.36 2.27 16 9 O -0.23 -6.72 8.95 -20.70 -0.19 -6.91 16 10 C 0.41 10.41 6.50 36.01 0.23 10.64 16 11 O -0.55 -15.53 15.22 -19.05 -0.29 -15.82 16 12 C -0.03 -0.60 0.71 -155.66 -0.11 -0.71 16 13 C -0.10 -1.71 4.41 -26.73 -0.12 -1.83 16 14 C -0.08 -1.10 3.19 -90.62 -0.29 -1.39 16 15 C -0.11 -1.33 5.19 -26.73 -0.14 -1.47 16 16 C -0.08 -1.10 3.19 -90.62 -0.29 -1.39 16 17 C -0.11 -1.28 5.19 -26.73 -0.14 -1.42 16 18 C -0.09 -1.09 3.20 -90.60 -0.29 -1.38 16 19 C -0.11 -1.28 5.19 -26.73 -0.14 -1.42 16 20 C -0.09 -1.47 3.77 -26.70 -0.10 -1.57 16 21 C -0.10 -1.71 4.40 -26.73 -0.12 -1.83 16 22 H 0.28 8.49 7.97 -40.82 -0.33 8.17 16 23 H 0.07 1.40 8.11 -51.93 -0.42 0.98 16 24 H 0.06 1.11 8.14 -51.94 -0.42 0.68 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 35 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.07 1.40 8.11 -51.93 -0.42 0.98 16 LS Contribution 286.00 15.07 4.31 4.31 Total: -1.00 -33.11 286.00 -7.60 -40.71 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.81 Total: 0.92 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -1.29 Total: -17.32 kcal Atomic # 7 Polarization: -26.69 SS G_CDS: 0.76 Total: -25.93 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.48 Total: -22.73 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.09 Total: 20.04 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.11 -7.60 -40.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798241792.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.002 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds