Wall clock time and date at job start Mon Mar 30 2020 18:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50698 * 119.99582 * 2 1 4 4 N 1.46903 * 109.46748 * 124.17156 * 3 2 1 5 5 C 1.46902 * 110.99907 * 196.03040 * 4 3 2 6 6 C 1.50703 * 109.46971 * 66.04892 * 5 4 3 7 7 H 1.08006 * 119.99984 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00524 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99505 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00346 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47382 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47251 * 120.00092 * 10 8 6 13 13 H 1.48504 * 109.47069 * 239.99924 * 10 8 6 14 14 C 1.46901 * 111.00046 * 72.08704 * 4 3 2 15 15 C 1.50701 * 109.47249 * 200.32012 * 14 4 3 16 16 C 1.38756 * 120.38670 * 83.84975 * 15 14 4 17 17 C 1.38506 * 118.44828 * 179.97438 * 16 15 14 18 18 C 1.38565 * 119.13850 * 359.97438 * 17 16 15 19 19 F 1.35094 * 119.64898 * 179.97438 * 18 17 16 20 20 N 1.32030 * 120.69975 * 359.97438 * 18 17 16 21 21 C 1.31937 * 121.68879 * 359.77087 * 20 18 17 22 22 H 1.08000 * 119.99515 * 179.97438 * 1 2 3 23 23 H 1.07995 * 120.00052 * 359.97438 * 1 2 3 24 24 H 1.07994 * 120.00288 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.47343 * 4.17259 * 3 2 1 26 26 H 1.09002 * 109.47705 * 244.17130 * 3 2 1 27 27 H 1.08993 * 109.47610 * 306.05059 * 5 4 3 28 28 H 1.08996 * 109.47320 * 186.04748 * 5 4 3 29 29 H 0.96995 * 119.99745 * 180.02562 * 9 8 6 30 30 H 1.09011 * 109.46501 * 320.31444 * 14 4 3 31 31 H 1.08991 * 109.47803 * 80.31680 * 14 4 3 32 32 H 1.07996 * 120.77688 * 359.95902 * 16 15 14 33 33 H 1.08001 * 120.43094 * 179.97438 * 17 16 15 34 34 H 1.07997 * 119.60503 * 180.24518 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9820 1.3402 1.1459 5 6 3.4474 2.7091 1.4058 6 6 2.2852 3.5586 1.8518 7 1 1.2995 3.1248 1.9343 8 6 2.4803 4.8893 2.1555 9 7 3.6806 5.4174 2.0555 10 14 1.0399 5.9420 2.7089 11 1 -0.1941 5.1164 2.7384 12 1 1.3108 6.4769 4.0675 13 1 0.8577 7.0699 1.7602 14 6 4.1158 0.4291 0.9400 15 6 4.7472 0.1043 2.2692 16 6 4.2266 -0.9058 3.0654 17 6 4.8388 -1.1709 4.2792 18 6 5.9436 -0.4237 4.6551 19 9 6.5484 -0.6732 5.8370 20 7 6.4114 0.5293 3.8703 21 6 5.8549 0.8039 2.7059 22 1 -0.5399 -0.9354 -0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8501 -0.9352 -0.0004 25 1 1.3575 2.1322 0.0748 26 1 2.6329 1.3961 -0.9250 27 1 3.8741 3.1271 0.4942 28 1 4.2064 2.6925 2.1879 29 1 3.8180 6.3534 2.2695 30 1 3.7630 -0.4896 0.4711 31 1 4.8530 0.9065 0.2945 32 1 3.3641 -1.4719 2.7462 33 1 4.4599 -1.9498 4.9244 34 1 6.2679 1.5882 2.0889 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814171877.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:15 Heat of formation + Delta-G solvation = 18.206011 kcal Electronic energy + Delta-G solvation = -17803.999015 eV Core-core repulsion = 14845.192262 eV Total energy + Delta-G solvation = -2958.806753 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.78181 -39.91371 -37.15264 -33.42480 -32.93011 -32.11987 -30.83322 -27.45993 -26.05100 -24.09260 -23.61988 -22.09959 -20.51951 -19.17867 -17.83750 -17.06587 -16.40648 -15.86005 -15.67855 -14.85518 -14.75685 -14.28834 -14.14554 -13.88759 -13.50564 -12.90955 -12.77043 -12.62314 -12.28981 -11.87582 -11.75117 -11.45674 -11.05949 -10.82122 -10.70768 -10.32990 -9.98642 -9.73626 -9.40082 -9.26481 -9.00978 -8.58839 -8.48293 -7.38668 -6.07443 -4.08710 1.14937 1.38167 2.64562 3.28283 3.36374 3.40255 3.76995 3.87551 4.39763 4.70833 4.90225 5.04333 5.10186 5.19212 5.28601 5.38168 5.49627 5.61644 5.76101 5.91713 5.99245 6.04598 6.11806 6.18656 6.44989 6.49041 6.85282 6.94581 7.14313 7.20901 7.22623 7.72994 7.88604 7.98608 8.09061 8.44187 8.98494 9.55772 11.03353 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.015399 B = 0.007360 C = 0.005603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.809459 B = 3803.475143 C = 4996.364254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.135 4.135 3 C 0.083 3.917 4 N -0.528 5.528 5 C 0.190 3.810 6 C -0.509 4.509 7 H 0.064 0.936 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.092 3.908 15 C -0.118 4.118 16 C -0.030 4.030 17 C -0.198 4.198 18 C 0.292 3.708 19 F -0.121 7.121 20 N -0.514 5.514 21 C 0.150 3.850 22 H 0.089 0.911 23 H 0.096 0.904 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.031 0.969 27 H -0.007 1.007 28 H 0.035 0.965 29 H 0.261 0.739 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.045 -13.101 -1.971 13.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.153 4.153 3 C -0.044 4.044 4 N -0.252 5.252 5 C 0.065 3.935 6 C -0.548 4.548 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.037 4.037 15 C -0.121 4.121 16 C -0.056 4.056 17 C -0.219 4.219 18 C 0.138 3.862 19 F -0.100 7.100 20 N -0.227 5.227 21 C -0.007 4.007 22 H 0.107 0.893 23 H 0.114 0.886 24 H 0.116 0.884 25 H 0.112 0.888 26 H 0.049 0.951 27 H 0.011 0.989 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.638 -12.611 -1.206 12.684 hybrid contribution -0.842 0.516 -0.219 1.012 sum -0.204 -12.095 -1.425 12.180 Atomic orbital electron populations 1.23723 0.95993 1.01287 1.02597 1.22984 0.95910 0.98366 0.98085 1.21199 0.96106 0.95617 0.91479 1.62179 1.14144 1.11252 1.37636 1.19830 0.96544 0.81429 0.95696 1.21158 0.95084 0.93745 1.44802 0.91804 1.24976 0.95837 0.97989 0.95696 1.69952 1.20936 1.13504 1.49074 0.86478 0.82618 0.80237 0.78337 1.19659 1.21002 1.21063 1.20953 0.93577 0.97888 0.91255 1.20883 0.96099 0.96182 0.98895 1.21293 0.97228 0.95284 0.91797 1.21736 0.97393 1.03302 0.99476 1.18157 0.91170 0.93827 0.83016 1.91579 1.83077 1.92588 1.42781 1.67002 1.33461 1.16284 1.05992 1.22493 0.91954 0.96266 0.90024 0.89257 0.88553 0.88393 0.88781 0.95112 0.98919 0.94724 0.92906 0.90681 0.93963 0.83998 0.84011 0.81785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.70 14.32 29.01 0.42 -2.28 16 2 C -0.13 -1.96 9.26 -36.03 -0.33 -2.29 16 3 C 0.08 1.48 5.25 -4.98 -0.03 1.45 16 4 N -0.53 -10.34 4.36 -238.96 -1.04 -11.38 16 5 C 0.19 4.63 4.54 -4.97 -0.02 4.61 16 6 C -0.51 -13.82 8.28 -34.44 -0.29 -14.10 16 7 H 0.06 1.73 7.26 -52.48 -0.38 1.35 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.09 13.29 55.43 0.74 -25.36 16 10 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 14 C 0.09 1.45 4.99 -4.98 -0.02 1.43 16 15 C -0.12 -1.88 5.04 -104.48 -0.53 -2.40 16 16 C -0.03 -0.42 9.88 -39.29 -0.39 -0.81 16 17 C -0.20 -2.73 10.09 -39.36 -0.40 -3.12 16 18 C 0.29 4.81 8.41 -17.35 -0.15 4.67 16 19 F -0.12 -1.94 17.29 2.25 0.04 -1.91 16 20 N -0.51 -9.38 10.37 -13.59 -0.14 -9.52 16 21 C 0.15 2.58 9.64 -17.56 -0.17 2.41 16 22 H 0.09 1.02 8.06 -52.49 -0.42 0.60 16 23 H 0.10 1.37 7.84 -52.49 -0.41 0.95 16 24 H 0.10 1.24 7.08 -52.49 -0.37 0.86 16 25 H 0.09 1.88 6.24 -51.93 -0.32 1.56 16 26 H 0.03 0.52 8.05 -51.93 -0.42 0.10 16 27 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16 28 H 0.03 0.91 6.46 -51.93 -0.34 0.57 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.07 0.99 6.54 -51.92 -0.34 0.65 16 31 H 0.04 0.66 7.90 -51.93 -0.41 0.25 16 32 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.17 2.72 8.02 -52.49 -0.42 2.30 16 LS Contribution 297.30 15.07 4.48 4.48 Total: -1.00 -29.97 297.30 -7.19 -37.15 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -4.24 Total: -0.92 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -2.00 Total: -8.96 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: -0.45 Total: -46.25 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.97 -7.19 -37.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814171877.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.359 kcal (2) G-P(sol) polarization free energy of solvation -29.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds