Wall clock time and date at job start Mon Mar 30 2020 18:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50698 * 119.99582 * 2 1 4 4 N 1.46903 * 109.46748 * 124.17156 * 3 2 1 5 5 C 1.46902 * 110.99907 * 196.03040 * 4 3 2 6 6 C 1.50703 * 109.46971 * 66.04892 * 5 4 3 7 7 H 1.08006 * 119.99984 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00524 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99505 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00346 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47382 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47251 * 120.00092 * 10 8 6 13 13 H 1.48504 * 109.47069 * 239.99924 * 10 8 6 14 14 C 1.46901 * 111.00046 * 72.08704 * 4 3 2 15 15 C 1.50701 * 109.47249 * 200.32012 * 14 4 3 16 16 C 1.38756 * 120.38670 * 83.84975 * 15 14 4 17 17 C 1.38506 * 118.44828 * 179.97438 * 16 15 14 18 18 C 1.38565 * 119.13850 * 359.97438 * 17 16 15 19 19 F 1.35094 * 119.64898 * 179.97438 * 18 17 16 20 20 N 1.32030 * 120.69975 * 359.97438 * 18 17 16 21 21 C 1.31937 * 121.68879 * 359.77087 * 20 18 17 22 22 H 1.08000 * 119.99515 * 179.97438 * 1 2 3 23 23 H 1.07995 * 120.00052 * 359.97438 * 1 2 3 24 24 H 1.07994 * 120.00288 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.47343 * 4.17259 * 3 2 1 26 26 H 1.09002 * 109.47705 * 244.17130 * 3 2 1 27 27 H 1.08993 * 109.47610 * 306.05059 * 5 4 3 28 28 H 1.08996 * 109.47320 * 186.04748 * 5 4 3 29 29 H 0.96995 * 119.99745 * 180.02562 * 9 8 6 30 30 H 1.09011 * 109.46501 * 320.31444 * 14 4 3 31 31 H 1.08991 * 109.47803 * 80.31680 * 14 4 3 32 32 H 1.07996 * 120.77688 * 359.95902 * 16 15 14 33 33 H 1.08001 * 120.43094 * 179.97438 * 17 16 15 34 34 H 1.07997 * 119.60503 * 180.24518 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9820 1.3402 1.1459 5 6 3.4474 2.7091 1.4058 6 6 2.2852 3.5586 1.8518 7 1 1.2995 3.1248 1.9343 8 6 2.4803 4.8893 2.1555 9 7 3.6806 5.4174 2.0555 10 14 1.0399 5.9420 2.7089 11 1 -0.1941 5.1164 2.7384 12 1 1.3108 6.4769 4.0675 13 1 0.8577 7.0699 1.7602 14 6 4.1158 0.4291 0.9400 15 6 4.7472 0.1043 2.2692 16 6 4.2266 -0.9058 3.0654 17 6 4.8388 -1.1709 4.2792 18 6 5.9436 -0.4237 4.6551 19 9 6.5484 -0.6732 5.8370 20 7 6.4114 0.5293 3.8703 21 6 5.8549 0.8039 2.7059 22 1 -0.5399 -0.9354 -0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8501 -0.9352 -0.0004 25 1 1.3575 2.1322 0.0748 26 1 2.6329 1.3961 -0.9250 27 1 3.8741 3.1271 0.4942 28 1 4.2064 2.6925 2.1879 29 1 3.8180 6.3534 2.2695 30 1 3.7630 -0.4896 0.4711 31 1 4.8530 0.9065 0.2945 32 1 3.3641 -1.4719 2.7462 33 1 4.4599 -1.9498 4.9244 34 1 6.2679 1.5882 2.0889 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814171877.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:14 Heat of formation + Delta-G solvation = -0.793276 kcal Electronic energy + Delta-G solvation = -17804.822886 eV Core-core repulsion = 14845.192262 eV Total energy + Delta-G solvation = -2959.630624 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.118 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.01979 -41.15955 -38.63276 -34.96209 -34.52551 -33.46922 -32.17925 -29.29953 -27.35642 -25.78824 -24.85675 -23.54817 -22.02904 -20.37970 -19.05529 -18.63476 -18.14725 -17.13153 -17.00177 -16.60613 -16.14678 -15.58401 -15.45059 -15.38833 -14.78553 -14.32555 -14.08416 -14.02442 -13.93617 -13.35090 -13.14236 -13.05469 -12.67757 -12.53839 -12.42003 -11.98267 -11.60768 -11.25397 -10.88358 -10.65462 -10.61000 -10.19257 -9.84070 -8.98299 -8.20273 -6.28558 -0.07656 0.20231 1.38223 1.39983 1.51823 1.54551 2.39027 2.53579 2.65318 3.13439 3.50078 3.56797 3.82953 3.91860 4.02017 4.17830 4.36547 4.47421 4.52679 4.67371 4.73936 4.81762 4.95906 4.98229 5.10601 5.22502 5.30959 5.33281 5.65823 5.67263 5.82946 6.07547 6.08782 6.34327 6.62369 6.64548 6.88170 7.40643 8.90435 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.015399 B = 0.007360 C = 0.005603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.809459 B = 3803.475143 C = 4996.364254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.143 4.143 3 C 0.083 3.917 4 N -0.531 5.531 5 C 0.206 3.794 6 C -0.519 4.519 7 H 0.061 0.939 8 C 0.002 3.998 9 N -0.932 5.932 10 Si 0.960 3.040 11 H -0.262 1.262 12 H -0.284 1.284 13 H -0.278 1.278 14 C 0.094 3.906 15 C -0.125 4.125 16 C -0.022 4.022 17 C -0.180 4.180 18 C 0.271 3.729 19 F -0.124 7.124 20 N -0.548 5.548 21 C 0.128 3.872 22 H 0.120 0.880 23 H 0.082 0.918 24 H 0.128 0.872 25 H 0.062 0.938 26 H 0.034 0.966 27 H -0.036 1.036 28 H 0.011 0.989 29 H 0.262 0.738 30 H 0.113 0.887 31 H 0.038 0.962 32 H 0.178 0.822 33 H 0.181 0.819 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.024 -15.433 -1.890 15.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.161 4.161 3 C -0.044 4.044 4 N -0.255 5.255 5 C 0.080 3.920 6 C -0.557 4.557 7 H 0.080 0.920 8 C -0.196 4.196 9 N -0.573 5.573 10 Si 0.786 3.214 11 H -0.186 1.186 12 H -0.210 1.210 13 H -0.204 1.204 14 C -0.034 4.034 15 C -0.128 4.128 16 C -0.048 4.048 17 C -0.201 4.201 18 C 0.118 3.882 19 F -0.103 7.103 20 N -0.263 5.263 21 C -0.028 4.028 22 H 0.138 0.862 23 H 0.101 0.899 24 H 0.146 0.854 25 H 0.081 0.919 26 H 0.052 0.948 27 H -0.018 1.018 28 H 0.029 0.971 29 H 0.071 0.929 30 H 0.131 0.869 31 H 0.056 0.944 32 H 0.196 0.804 33 H 0.199 0.801 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.440 -14.963 -1.139 15.075 hybrid contribution -0.197 1.191 -0.259 1.235 sum -1.637 -13.772 -1.398 13.939 Atomic orbital electron populations 1.23928 0.95821 1.02158 1.00684 1.22893 0.96100 0.97413 0.99708 1.21168 0.95429 0.96904 0.90885 1.62073 1.15592 1.08771 1.39059 1.19424 0.94986 0.84138 0.93466 1.21496 0.95672 0.94376 1.44157 0.92035 1.25838 0.98352 0.99477 0.95932 1.70078 1.22988 1.13837 1.50349 0.85461 0.79664 0.78581 0.77718 1.18613 1.20972 1.20383 1.21047 0.92367 0.98371 0.91592 1.20958 0.95709 0.96808 0.99310 1.21705 0.97609 0.94335 0.91147 1.22112 0.95516 1.02851 0.99597 1.18533 0.92340 0.94346 0.83021 1.91569 1.83323 1.92583 1.42819 1.66863 1.34871 1.17786 1.06762 1.22440 0.93235 0.96953 0.90161 0.86173 0.89920 0.85405 0.91916 0.94804 1.01789 0.97077 0.92894 0.86859 0.94401 0.80433 0.80144 0.82972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.50 14.32 67.77 0.97 -3.53 16 2 C -0.14 -3.68 9.26 25.64 0.24 -3.44 16 3 C 0.08 2.88 5.25 85.56 0.45 3.33 16 4 N -0.53 -20.49 4.36 -909.93 -3.96 -24.45 16 5 C 0.21 10.39 4.54 85.56 0.39 10.78 16 6 C -0.52 -28.66 8.28 25.60 0.21 -28.45 16 7 H 0.06 3.36 7.26 -2.91 -0.02 3.33 16 8 C 0.00 0.12 5.46 84.65 0.46 0.58 16 9 N -0.93 -55.89 13.29 21.45 0.28 -55.61 16 10 Si 0.96 44.33 29.54 68.60 2.03 46.35 16 11 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 13 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 14 C 0.09 2.84 4.99 85.56 0.43 3.27 16 15 C -0.13 -3.84 5.04 -19.77 -0.10 -3.94 16 16 C -0.02 -0.54 9.88 22.46 0.22 -0.32 16 17 C -0.18 -4.42 10.09 22.41 0.23 -4.20 16 18 C 0.27 8.73 8.41 84.74 0.71 9.44 16 19 F -0.12 -3.90 17.29 44.97 0.78 -3.12 16 20 N -0.55 -20.48 10.37 -196.92 -2.04 -22.52 16 21 C 0.13 4.56 9.64 84.65 0.82 5.38 16 22 H 0.12 2.17 8.06 -2.91 -0.02 2.14 16 23 H 0.08 2.19 7.84 -2.91 -0.02 2.17 16 24 H 0.13 2.56 7.08 -2.91 -0.02 2.54 16 25 H 0.06 2.53 6.24 -2.39 -0.01 2.52 16 26 H 0.03 1.13 8.05 -2.39 -0.02 1.11 16 27 H -0.04 -1.95 8.12 -2.39 -0.02 -1.97 16 28 H 0.01 0.61 6.46 -2.39 -0.02 0.60 16 29 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 30 H 0.11 2.55 6.54 -2.38 -0.02 2.54 16 31 H 0.04 1.18 7.90 -2.39 -0.02 1.16 16 32 H 0.18 3.11 8.06 -2.91 -0.02 3.08 16 33 H 0.18 2.99 8.06 -2.91 -0.02 2.96 16 34 H 0.15 5.51 8.02 -2.91 -0.02 5.48 16 Total: -1.00 -66.77 297.30 3.19 -63.57 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: 1.09 Total: 6.88 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 5.02 Total: -11.10 kcal Atomic # 7 Polarization: -96.86 SS G_CDS: -5.72 Total: -102.58 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.78 Total: -3.12 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -66.77 3.19 -63.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814171877.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.780 kcal (2) G-P(sol) polarization free energy of solvation -66.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds