Wall clock time and date at job start Mon Mar 30 2020 18:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46928 * 2 1 4 4 C 1.50693 * 109.46731 * 120.00035 * 2 1 3 5 5 N 1.28016 * 119.99726 * 239.99903 * 4 2 1 6 6 N 1.40107 * 120.00158 * 180.02562 * 5 4 2 7 7 C 1.34770 * 120.00103 * 179.97438 * 6 5 4 8 8 O 1.21596 * 120.00463 * 359.97438 * 7 6 5 9 9 C 1.47670 * 119.99804 * 179.97438 * 7 6 5 10 10 C 1.41524 * 126.52048 * 179.97438 * 9 7 6 11 11 C 1.35355 * 105.50286 * 180.02562 * 10 9 7 12 12 N 1.35036 * 107.23508 * 359.97438 * 11 10 9 13 13 H 0.97001 * 124.88583 * 179.97438 * 12 11 10 14 14 N 1.28474 * 110.23157 * 0.02562 * 12 11 10 15 15 C 1.52995 * 109.46959 * 240.00047 * 2 1 3 16 16 C 1.50702 * 109.47553 * 64.99963 * 15 2 1 17 17 H 1.07997 * 119.99877 * 0.02562 * 16 15 2 18 18 C 1.37868 * 120.00224 * 179.97438 * 16 15 2 19 19 N 1.31515 * 120.00331 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00237 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47054 * 89.99528 * 20 18 16 22 22 H 1.48498 * 109.47538 * 210.00052 * 20 18 16 23 23 H 1.48500 * 109.46952 * 329.99897 * 20 18 16 24 24 H 1.09002 * 109.47334 * 300.00610 * 1 2 3 25 25 H 1.09004 * 109.46929 * 59.99683 * 1 2 3 26 26 H 1.08994 * 109.47175 * 179.97438 * 1 2 3 27 27 H 1.07997 * 120.00704 * 59.99983 * 4 2 1 28 28 H 0.97002 * 119.99802 * 359.97438 * 6 5 4 29 29 H 1.08000 * 127.24699 * 0.06003 * 10 9 7 30 30 H 1.08001 * 126.38444 * 180.02562 * 11 10 9 31 31 H 1.09000 * 109.46837 * 184.99877 * 15 2 1 32 32 H 1.08997 * 109.47106 * 304.99993 * 15 2 1 33 33 H 0.96997 * 120.00397 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 2.7682 -0.0882 2.0731 6 7 3.2357 -0.7488 3.2169 7 6 4.0109 -0.0940 4.1037 8 8 4.3051 1.0700 3.9111 9 6 4.5030 -0.7901 5.3095 10 6 5.3207 -0.2396 6.3250 11 6 5.5131 -1.2398 7.2164 12 7 4.8470 -2.3203 6.7554 13 1 4.8138 -3.1824 7.1988 14 7 4.2645 -2.0424 5.6446 15 6 2.0400 -0.7212 -1.2492 16 6 1.6413 0.0570 -2.4766 17 1 1.0807 0.9745 -2.3757 18 6 1.9932 -0.4017 -3.7282 19 7 1.6458 0.2777 -4.7993 20 14 2.9636 -1.9884 -3.9028 21 1 2.0243 -3.1327 -4.0200 22 1 3.8126 -1.9182 -5.1191 23 1 3.8252 -2.1756 -2.7079 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.7714 -1.7443 1.4014 28 1 3.0013 -1.6775 3.3704 29 1 5.7090 0.7668 6.3778 30 1 6.0909 -1.1840 8.1272 31 1 3.1263 -0.7994 -1.2056 32 1 1.6054 -1.7197 -1.2951 33 1 1.8936 -0.0449 -5.6799 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853392316.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:27 Heat of formation + Delta-G solvation = 72.135790 kcal Electronic energy + Delta-G solvation = -16946.751058 eV Core-core repulsion = 14010.202837 eV Total energy + Delta-G solvation = -2936.548221 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.96138 -39.23360 -36.99713 -34.81568 -32.62383 -32.12141 -31.28583 -30.38979 -27.54474 -25.00064 -23.56355 -22.10440 -21.30206 -20.36028 -19.17758 -18.80971 -17.50208 -16.82551 -16.55310 -16.05441 -14.64440 -14.59118 -14.19067 -14.01859 -13.65092 -13.45635 -13.26637 -12.74116 -12.26830 -11.70167 -11.35815 -11.18634 -11.07062 -10.81827 -10.30948 -10.10985 -9.88901 -9.80698 -9.79219 -9.63739 -9.56805 -9.12723 -8.55869 -8.52083 -6.02155 -4.00128 1.24723 1.78310 2.39272 2.43083 2.74550 3.31769 3.40212 3.43570 3.45141 4.11315 4.46819 4.47740 4.84116 5.13243 5.25892 5.30518 5.34065 5.41765 5.90654 5.98715 6.02458 6.10483 6.42252 6.56535 6.67733 6.81623 6.98615 7.16908 7.22776 7.33605 7.45475 7.75811 7.78587 8.54131 8.58212 9.02799 9.59655 11.10961 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.036308 B = 0.003748 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.993622 B = 7469.568576 C = 7740.414630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.032 4.032 3 H 0.087 0.913 4 C 0.104 3.896 5 N -0.252 5.252 6 N -0.581 5.581 7 C 0.620 3.380 8 O -0.498 6.498 9 C -0.006 4.006 10 C -0.175 4.175 11 C -0.015 4.015 12 N -0.382 5.382 13 H 0.447 0.553 14 N -0.262 5.262 15 C -0.003 4.003 16 C -0.515 4.515 17 H 0.078 0.922 18 C 0.068 3.932 19 N -0.902 5.902 20 Si 0.877 3.123 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.266 1.266 24 H 0.038 0.962 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.103 0.897 28 H 0.386 0.614 29 H 0.166 0.834 30 H 0.188 0.812 31 H 0.019 0.981 32 H 0.016 0.984 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.095 -8.061 24.546 26.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.053 4.053 3 H 0.105 0.895 4 C -0.111 4.111 5 N -0.054 5.054 6 N -0.322 5.322 7 C 0.404 3.596 8 O -0.368 6.368 9 C -0.169 4.169 10 C -0.203 4.203 11 C -0.159 4.159 12 N -0.097 5.097 13 H 0.291 0.709 14 N -0.099 5.099 15 C -0.042 4.042 16 C -0.553 4.553 17 H 0.096 0.904 18 C -0.133 4.133 19 N -0.541 5.541 20 Si 0.704 3.296 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.191 1.191 24 H 0.057 0.943 25 H 0.098 0.902 26 H 0.068 0.932 27 H 0.120 0.880 28 H 0.224 0.776 29 H 0.184 0.816 30 H 0.205 0.795 31 H 0.037 0.963 32 H 0.034 0.966 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.278 -7.295 24.191 25.812 hybrid contribution 0.586 -2.088 0.420 2.209 sum 5.864 -9.383 24.610 26.983 Atomic orbital electron populations 1.21690 0.93878 1.01487 1.01715 1.20175 0.95807 1.00259 0.89059 0.89491 1.26784 0.91907 0.97915 0.94499 1.74579 1.11866 1.24191 0.94718 1.46860 1.50859 1.13842 1.20606 1.16516 0.77634 0.85495 0.79990 1.90825 1.55849 1.15384 1.74749 1.21905 1.04854 0.91348 0.98760 1.21843 1.02958 1.01471 0.94044 1.22977 1.02785 0.87577 1.02561 1.43358 1.36451 1.13546 1.16299 0.70864 1.73550 1.18100 1.17010 1.01251 1.19612 0.96350 0.95874 0.92354 1.21051 1.35710 1.09745 0.88779 0.90439 1.24985 0.95518 0.96931 0.95907 1.69901 1.46938 1.39226 0.98042 0.86830 0.80686 0.84299 0.77783 1.20304 1.21412 1.19096 0.94289 0.90216 0.93203 0.88022 0.77620 0.81603 0.79542 0.96305 0.96562 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.99 37.16 0.33 -1.92 16 2 C -0.03 -0.62 2.75 -91.78 -0.25 -0.87 16 3 H 0.09 1.84 8.11 -51.93 -0.42 1.41 16 4 C 0.10 1.78 9.66 -13.87 -0.13 1.65 16 5 N -0.25 -4.71 10.93 32.67 0.36 -4.36 16 6 N -0.58 -9.31 6.25 30.49 0.19 -9.12 16 7 C 0.62 10.26 7.94 -12.41 -0.10 10.16 16 8 O -0.50 -10.03 17.26 5.28 0.09 -9.94 16 9 C -0.01 -0.08 7.13 -82.77 -0.59 -0.67 16 10 C -0.18 -1.74 10.81 -39.36 -0.43 -2.16 16 11 C -0.01 -0.09 12.02 -17.17 -0.21 -0.30 16 12 N -0.38 -2.47 6.83 30.47 0.21 -2.26 16 13 H 0.45 1.05 8.96 -190.44 -1.71 -0.65 16 14 N -0.26 -2.77 11.92 33.42 0.40 -2.37 16 15 C 0.00 -0.08 3.50 -27.88 -0.10 -0.18 16 16 C -0.51 -14.19 8.96 -34.44 -0.31 -14.50 16 17 H 0.08 2.27 7.30 -52.49 -0.38 1.89 16 18 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 19 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 20 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.08 1.53 6.95 -51.93 -0.36 1.17 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.10 1.43 8.00 -52.49 -0.42 1.01 16 28 H 0.39 5.05 8.36 -182.59 -1.53 3.52 16 29 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.19 0.32 8.06 -52.49 -0.42 -0.10 16 31 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 32 H 0.02 0.36 7.57 -51.93 -0.39 -0.04 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 295.74 15.07 4.46 4.46 Total: -1.00 -35.67 295.74 -6.51 -42.18 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -6.44 Total: -1.71 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -1.88 Total: -6.94 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: 1.93 Total: -44.86 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -35.67 -6.51 -42.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853392316.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.316 kcal (2) G-P(sol) polarization free energy of solvation -35.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds