Wall clock time and date at job start Mon Mar 30 2020 18:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46928 * 2 1 4 4 C 1.50693 * 109.46731 * 120.00035 * 2 1 3 5 5 N 1.28016 * 119.99726 * 239.99903 * 4 2 1 6 6 N 1.40107 * 120.00158 * 180.02562 * 5 4 2 7 7 C 1.34770 * 120.00103 * 179.97438 * 6 5 4 8 8 O 1.21596 * 120.00463 * 359.97438 * 7 6 5 9 9 C 1.47670 * 119.99804 * 179.97438 * 7 6 5 10 10 C 1.41524 * 126.52048 * 179.97438 * 9 7 6 11 11 C 1.35355 * 105.50286 * 180.02562 * 10 9 7 12 12 N 1.35036 * 107.23508 * 359.97438 * 11 10 9 13 13 H 0.97001 * 124.88583 * 179.97438 * 12 11 10 14 14 N 1.28474 * 110.23157 * 0.02562 * 12 11 10 15 15 C 1.52995 * 109.46959 * 240.00047 * 2 1 3 16 16 C 1.50702 * 109.47553 * 64.99963 * 15 2 1 17 17 H 1.07997 * 119.99877 * 0.02562 * 16 15 2 18 18 C 1.37868 * 120.00224 * 179.97438 * 16 15 2 19 19 N 1.31515 * 120.00331 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00237 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47054 * 89.99528 * 20 18 16 22 22 H 1.48498 * 109.47538 * 210.00052 * 20 18 16 23 23 H 1.48500 * 109.46952 * 329.99897 * 20 18 16 24 24 H 1.09002 * 109.47334 * 300.00610 * 1 2 3 25 25 H 1.09004 * 109.46929 * 59.99683 * 1 2 3 26 26 H 1.08994 * 109.47175 * 179.97438 * 1 2 3 27 27 H 1.07997 * 120.00704 * 59.99983 * 4 2 1 28 28 H 0.97002 * 119.99802 * 359.97438 * 6 5 4 29 29 H 1.08000 * 127.24699 * 0.06003 * 10 9 7 30 30 H 1.08001 * 126.38444 * 180.02562 * 11 10 9 31 31 H 1.09000 * 109.46837 * 184.99877 * 15 2 1 32 32 H 1.08997 * 109.47106 * 304.99993 * 15 2 1 33 33 H 0.96997 * 120.00397 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 2.7682 -0.0882 2.0731 6 7 3.2357 -0.7488 3.2169 7 6 4.0109 -0.0940 4.1037 8 8 4.3051 1.0700 3.9111 9 6 4.5030 -0.7901 5.3095 10 6 5.3207 -0.2396 6.3250 11 6 5.5131 -1.2398 7.2164 12 7 4.8470 -2.3203 6.7554 13 1 4.8138 -3.1824 7.1988 14 7 4.2645 -2.0424 5.6446 15 6 2.0400 -0.7212 -1.2492 16 6 1.6413 0.0570 -2.4766 17 1 1.0807 0.9745 -2.3757 18 6 1.9932 -0.4017 -3.7282 19 7 1.6458 0.2777 -4.7993 20 14 2.9636 -1.9884 -3.9028 21 1 2.0243 -3.1327 -4.0200 22 1 3.8126 -1.9182 -5.1191 23 1 3.8252 -2.1756 -2.7079 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.7714 -1.7443 1.4014 28 1 3.0013 -1.6775 3.3704 29 1 5.7090 0.7668 6.3778 30 1 6.0909 -1.1840 8.1272 31 1 3.1263 -0.7994 -1.2056 32 1 1.6054 -1.7197 -1.2951 33 1 1.8936 -0.0449 -5.6799 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853392316.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:26 Heat of formation + Delta-G solvation = 44.442368 kcal Electronic energy + Delta-G solvation = -16947.951934 eV Core-core repulsion = 14010.202837 eV Total energy + Delta-G solvation = -2937.749098 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.64933 -40.51184 -38.45882 -36.40790 -34.41053 -33.28550 -32.20872 -31.44083 -29.38523 -26.27827 -25.04095 -23.09070 -22.54770 -21.57498 -20.54080 -19.57538 -19.02357 -18.29669 -18.00444 -16.89556 -16.29125 -15.79099 -15.72579 -15.26531 -14.92778 -14.66202 -14.51085 -14.11724 -13.98569 -13.33843 -12.87169 -12.77695 -12.52100 -12.08922 -11.87230 -11.76513 -11.60526 -11.48321 -11.29836 -10.96172 -10.70234 -10.56345 -10.20818 -9.91822 -8.22373 -6.25303 0.26780 1.04799 1.28827 1.35846 1.38988 1.42604 1.53007 2.08520 2.31314 2.41101 3.13073 3.24523 3.78019 3.90075 4.05517 4.14559 4.41559 4.49144 4.64455 4.71885 4.73983 4.96084 5.06861 5.21180 5.27936 5.37535 5.49046 5.61056 5.71294 5.97951 6.14083 6.35034 6.44017 6.81722 6.82292 7.34377 7.37946 8.94157 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.036308 B = 0.003748 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.993622 B = 7469.568576 C = 7740.414630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.029 4.029 3 H 0.058 0.942 4 C 0.114 3.886 5 N -0.290 5.290 6 N -0.572 5.572 7 C 0.615 3.385 8 O -0.549 6.549 9 C -0.040 4.040 10 C -0.205 4.205 11 C 0.022 3.978 12 N -0.360 5.360 13 H 0.467 0.533 14 N -0.272 5.272 15 C 0.001 3.999 16 C -0.519 4.519 17 H 0.040 0.960 18 C 0.004 3.996 19 N -0.953 5.953 20 Si 0.946 3.054 21 H -0.259 1.259 22 H -0.290 1.290 23 H -0.251 1.251 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.142 0.858 28 H 0.401 0.599 29 H 0.164 0.836 30 H 0.240 0.760 31 H 0.011 0.989 32 H 0.038 0.962 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.015 -11.274 27.530 30.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.050 4.050 3 H 0.077 0.923 4 C -0.100 4.100 5 N -0.092 5.092 6 N -0.314 5.314 7 C 0.402 3.598 8 O -0.422 6.422 9 C -0.200 4.200 10 C -0.233 4.233 11 C -0.123 4.123 12 N -0.077 5.077 13 H 0.316 0.684 14 N -0.111 5.111 15 C -0.038 4.038 16 C -0.557 4.557 17 H 0.059 0.941 18 C -0.192 4.192 19 N -0.594 5.594 20 Si 0.770 3.230 21 H -0.184 1.184 22 H -0.216 1.216 23 H -0.175 1.175 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.159 0.841 28 H 0.242 0.758 29 H 0.182 0.818 30 H 0.256 0.744 31 H 0.030 0.970 32 H 0.056 0.944 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.174 -10.558 27.201 29.824 hybrid contribution 0.299 -1.055 -0.385 1.162 sum 6.472 -11.613 26.816 29.931 Atomic orbital electron populations 1.21605 0.92251 1.02868 1.01363 1.19955 0.97202 0.98653 0.89207 0.92303 1.26555 0.91251 0.99166 0.93029 1.74466 1.12492 1.26248 0.96026 1.46735 1.50566 1.14440 1.19693 1.17162 0.76754 0.85179 0.80700 1.90780 1.57758 1.17562 1.76124 1.21501 1.07328 0.92642 0.98504 1.22081 1.03768 1.02767 0.94664 1.23617 1.00612 0.85544 1.02519 1.43512 1.34649 1.14670 1.14896 0.68374 1.73458 1.18861 1.15917 1.02879 1.19519 0.95929 0.96477 0.91856 1.21374 1.34575 1.08874 0.90861 0.94131 1.25941 0.96863 1.00936 0.95500 1.70062 1.48976 1.41607 0.98737 0.85723 0.79407 0.79899 0.78002 1.18407 1.21637 1.17525 0.92259 0.92963 0.90893 0.84094 0.75819 0.81817 0.74425 0.97041 0.94362 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.18 8.99 71.98 0.65 -3.53 16 2 C -0.03 -1.12 2.75 -11.54 -0.03 -1.15 16 3 H 0.06 2.58 8.11 -2.38 -0.02 2.57 16 4 C 0.11 3.73 9.66 88.66 0.86 4.59 16 5 N -0.29 -10.76 10.93 -50.47 -0.55 -11.31 16 6 N -0.57 -18.00 6.25 -175.71 -1.10 -19.10 16 7 C 0.62 20.62 7.94 86.74 0.69 21.31 16 8 O -0.55 -22.99 17.26 -4.02 -0.07 -23.06 16 9 C -0.04 -0.98 7.13 42.45 0.30 -0.67 16 10 C -0.20 -3.73 10.81 22.41 0.24 -3.48 16 11 C 0.02 0.18 12.02 83.53 1.00 1.18 16 12 N -0.36 -3.25 6.83 -57.51 -0.39 -3.64 16 13 H 0.47 0.07 8.96 -219.99 -1.97 -1.90 16 14 N -0.27 -5.11 11.92 -48.19 -0.57 -5.69 16 15 C 0.00 0.03 3.50 29.85 0.10 0.14 16 16 C -0.52 -29.29 8.96 25.60 0.23 -29.06 16 17 H 0.04 2.52 7.30 -2.91 -0.02 2.49 16 18 C 0.00 0.23 5.47 84.65 0.46 0.69 16 19 N -0.95 -59.84 13.96 21.44 0.30 -59.55 16 20 Si 0.95 43.93 27.47 68.60 1.88 45.82 16 21 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 22 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 23 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 24 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.05 2.05 6.95 -2.38 -0.02 2.04 16 26 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.14 3.45 8.00 -2.91 -0.02 3.43 16 28 H 0.40 9.88 8.36 -213.31 -1.78 8.10 16 29 H 0.16 2.92 8.06 -2.91 -0.02 2.89 16 30 H 0.24 -0.68 8.06 -2.91 -0.02 -0.70 16 31 H 0.01 0.53 7.20 -2.39 -0.02 0.51 16 32 H 0.04 1.58 7.57 -2.39 -0.02 1.56 16 33 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -81.91 295.74 1.34 -80.57 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -2.66 Total: 5.95 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 4.51 Total: -9.99 kcal Atomic # 7 Polarization: -96.97 SS G_CDS: -2.32 Total: -99.28 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.07 Total: -23.06 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.88 Total: 45.82 kcal Total: -81.91 1.34 -80.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853392316.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.013 kcal (2) G-P(sol) polarization free energy of solvation -81.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds