Wall clock time and date at job start Mon Mar 30 2020 18:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46805 * 2 1 4 4 C 1.50701 * 109.47387 * 239.99569 * 2 1 3 5 5 N 1.28009 * 119.99815 * 119.99406 * 4 2 1 6 6 N 1.40100 * 119.99857 * 180.02562 * 5 4 2 7 7 C 1.34781 * 119.99822 * 180.02562 * 6 5 4 8 8 O 1.21624 * 120.00019 * 0.02562 * 7 6 5 9 9 C 1.47400 * 119.99883 * 180.02562 * 7 6 5 10 10 C 1.41308 * 126.41673 * 359.97438 * 9 7 6 11 11 N 1.30453 * 108.02489 * 179.78001 * 10 9 7 12 12 N 1.39933 * 108.90170 * 0.38235 * 11 10 9 13 13 H 0.97001 * 125.75535 * 179.88095 * 12 11 10 14 14 C 1.34280 * 108.49038 * 359.60633 * 12 11 10 15 15 C 1.53000 * 109.47145 * 119.99642 * 2 1 3 16 16 C 1.50698 * 109.47297 * 295.00134 * 15 2 1 17 17 H 1.08001 * 120.00083 * 0.02562 * 16 15 2 18 18 C 1.37876 * 120.00285 * 180.02562 * 16 15 2 19 19 N 1.31509 * 119.99909 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00140 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46902 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47111 * 119.99730 * 20 18 16 23 23 H 1.48500 * 109.47155 * 239.99746 * 20 18 16 24 24 H 1.09000 * 109.47397 * 300.00277 * 1 2 3 25 25 H 1.08994 * 109.47624 * 60.00510 * 1 2 3 26 26 H 1.09006 * 109.47061 * 180.02562 * 1 2 3 27 27 H 1.07992 * 120.00186 * 300.00200 * 4 2 1 28 28 H 0.96998 * 120.00431 * 0.02562 * 6 5 4 29 29 H 1.07994 * 125.98407 * 0.02562 * 10 9 7 30 30 H 1.08002 * 126.28953 * 180.24678 * 14 12 11 31 31 H 1.08997 * 109.47198 * 54.99937 * 15 2 1 32 32 H 1.08999 * 109.46974 * 174.99939 * 15 2 1 33 33 H 0.97006 * 120.00171 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 2.7682 -0.0884 -2.0731 6 7 3.2348 -0.7487 -3.2172 7 6 4.0100 -0.0938 -4.1042 8 8 4.3049 1.0702 -3.9111 9 6 4.5005 -0.7884 -5.3082 10 6 4.2433 -2.1312 -5.6653 11 7 4.8455 -2.3702 -6.7976 12 7 5.5142 -1.2118 -7.2087 13 1 6.0416 -1.1186 -8.0174 14 6 5.2976 -0.2491 -6.2980 15 6 2.0399 -0.7212 1.2493 16 6 1.6413 0.0571 2.4766 17 1 1.0799 0.9742 2.3757 18 6 1.9932 -0.4015 3.7283 19 7 2.6763 -1.5185 3.8512 20 14 1.4996 0.5637 5.2496 21 1 0.7431 1.7753 4.8432 22 1 0.6458 -0.2851 6.1190 23 1 2.7179 0.9686 5.9959 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.7715 -1.7444 -1.4013 28 1 3.0000 -1.6772 -3.3710 29 1 3.6488 -2.8349 -5.1018 30 1 5.6771 0.7615 -6.3335 31 1 1.6053 -1.7197 1.2953 32 1 3.1262 -0.7994 1.2056 33 1 2.9236 -1.8414 4.7319 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863154575.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:39 Heat of formation + Delta-G solvation = 64.609757 kcal Electronic energy + Delta-G solvation = -16869.825823 eV Core-core repulsion = 13932.951249 eV Total energy + Delta-G solvation = -2936.874574 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.63695 -39.00431 -36.84978 -34.70726 -32.64352 -32.08038 -31.05251 -29.91897 -26.95740 -24.59823 -23.27230 -22.31475 -21.41324 -20.28108 -19.34913 -18.52071 -17.25255 -16.15777 -16.04474 -15.42033 -14.96030 -14.54525 -14.37072 -14.29436 -13.41558 -13.15067 -13.09593 -12.71547 -11.93677 -11.53841 -11.51419 -11.12140 -10.90513 -10.74136 -10.40580 -10.24093 -10.07662 -9.90628 -9.64438 -9.48224 -9.18208 -9.05205 -8.41948 -8.35282 -6.00303 -4.01872 1.21938 1.81168 2.28574 2.52093 2.83730 3.33010 3.40987 3.44957 3.55644 4.26438 4.46974 4.48780 4.81311 4.98722 5.24246 5.29381 5.36441 5.43798 5.94070 6.01394 6.10700 6.19794 6.50569 6.69100 6.82940 6.98410 6.99752 7.07749 7.35459 7.63811 7.71390 7.88840 7.98277 8.39019 8.70315 9.03735 9.61959 11.11229 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.046083 B = 0.003370 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.456700 B = 8305.632410 C = 8356.896328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.041 4.041 3 H 0.080 0.920 4 C 0.107 3.893 5 N -0.254 5.254 6 N -0.588 5.588 7 C 0.611 3.389 8 O -0.519 6.519 9 C -0.288 4.288 10 C 0.085 3.915 11 N -0.295 5.295 12 N -0.464 5.464 13 H 0.445 0.555 14 C 0.138 3.862 15 C 0.033 3.967 16 C -0.514 4.514 17 H 0.060 0.940 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.285 1.285 24 H 0.073 0.927 25 H 0.035 0.965 26 H 0.049 0.951 27 H 0.101 0.899 28 H 0.377 0.623 29 H 0.191 0.809 30 H 0.195 0.805 31 H 0.021 0.979 32 H 0.019 0.981 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.177 -1.903 -20.144 20.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 H 0.098 0.902 4 C -0.108 4.108 5 N -0.056 5.056 6 N -0.328 5.328 7 C 0.398 3.602 8 O -0.394 6.394 9 C -0.304 4.304 10 C -0.104 4.104 11 N -0.116 5.116 12 N -0.169 5.169 13 H 0.290 0.710 14 C -0.015 4.015 15 C -0.005 4.005 16 C -0.552 4.552 17 H 0.078 0.922 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.211 1.211 24 H 0.092 0.908 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.119 0.881 28 H 0.215 0.785 29 H 0.208 0.792 30 H 0.212 0.788 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.203 -1.255 -21.140 21.418 hybrid contribution -0.461 -0.401 1.090 1.250 sum 2.741 -1.656 -20.050 20.304 Atomic orbital electron populations 1.21670 0.94373 1.01403 1.01149 1.20384 0.95459 1.00185 0.90238 0.90165 1.26738 0.91894 0.97821 0.94352 1.74576 1.11989 1.24187 0.94832 1.46818 1.51630 1.13444 1.20914 1.16870 0.77129 0.85649 0.80551 1.90789 1.56597 1.16132 1.75841 1.20238 1.13346 0.95834 1.00989 1.24141 0.97626 0.95168 0.93461 1.77168 1.13450 1.05756 1.15228 1.46237 1.41104 1.08415 1.21186 0.70963 1.23065 0.94702 0.95456 0.88313 1.19131 0.96544 0.95549 0.89306 1.21211 1.34944 1.08460 0.90631 0.92157 1.25005 0.95194 0.95080 0.99159 1.69969 1.38890 1.21224 1.23424 0.86539 0.78273 0.80115 0.83108 1.19629 1.21100 1.21087 0.90774 0.94574 0.93149 0.88144 0.78533 0.79218 0.78839 0.96063 0.96287 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.98 37.15 0.33 -1.88 16 2 C -0.04 -0.82 2.75 -91.77 -0.25 -1.07 16 3 H 0.08 1.70 8.11 -51.93 -0.42 1.28 16 4 C 0.11 1.85 9.66 -13.87 -0.13 1.71 16 5 N -0.25 -4.70 10.93 32.67 0.36 -4.35 16 6 N -0.59 -8.78 6.24 30.43 0.19 -8.59 16 7 C 0.61 9.40 7.93 -12.53 -0.10 9.30 16 8 O -0.52 -10.10 17.24 5.26 0.09 -10.01 16 9 C -0.29 -3.23 6.13 -105.07 -0.64 -3.88 16 10 C 0.08 0.80 11.50 -16.97 -0.20 0.60 16 11 N -0.30 -2.88 12.63 30.86 0.39 -2.49 16 12 N -0.46 -3.31 7.29 30.85 0.22 -3.08 16 13 H 0.45 1.50 8.96 -182.72 -1.64 -0.14 16 14 C 0.14 1.17 11.82 -16.55 -0.20 0.97 16 15 C 0.03 0.81 4.43 -27.88 -0.12 0.68 16 16 C -0.51 -13.88 8.41 -34.44 -0.29 -14.17 16 17 H 0.06 1.58 7.06 -52.49 -0.37 1.21 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -26.30 13.29 55.43 0.74 -25.57 16 20 Si 0.89 21.28 29.54 -169.99 -5.02 16.25 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H 0.07 1.37 6.95 -51.93 -0.36 1.01 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.10 1.44 8.00 -52.49 -0.42 1.02 16 28 H 0.38 4.13 7.58 -182.60 -1.38 2.75 16 29 H 0.19 1.21 7.50 -52.49 -0.39 0.82 16 30 H 0.19 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 298.64 15.07 4.50 4.50 Total: -1.00 -35.48 298.64 -6.47 -41.94 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -6.24 Total: -2.37 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -1.70 Total: -6.24 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 1.90 Total: -44.07 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -35.48 -6.47 -41.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863154575.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.555 kcal (2) G-P(sol) polarization free energy of solvation -35.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds