Wall clock time and date at job start Mon Mar 30 2020 18:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46805 * 2 1 4 4 C 1.50701 * 109.47387 * 239.99569 * 2 1 3 5 5 N 1.28009 * 119.99815 * 119.99406 * 4 2 1 6 6 N 1.40100 * 119.99857 * 180.02562 * 5 4 2 7 7 C 1.34781 * 119.99822 * 180.02562 * 6 5 4 8 8 O 1.21624 * 120.00019 * 0.02562 * 7 6 5 9 9 C 1.47400 * 119.99883 * 180.02562 * 7 6 5 10 10 C 1.41308 * 126.41673 * 359.97438 * 9 7 6 11 11 N 1.30453 * 108.02489 * 179.78001 * 10 9 7 12 12 N 1.39933 * 108.90170 * 0.38235 * 11 10 9 13 13 H 0.97001 * 125.75535 * 179.88095 * 12 11 10 14 14 C 1.34280 * 108.49038 * 359.60633 * 12 11 10 15 15 C 1.53000 * 109.47145 * 119.99642 * 2 1 3 16 16 C 1.50698 * 109.47297 * 295.00134 * 15 2 1 17 17 H 1.08001 * 120.00083 * 0.02562 * 16 15 2 18 18 C 1.37876 * 120.00285 * 180.02562 * 16 15 2 19 19 N 1.31509 * 119.99909 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00140 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46902 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47111 * 119.99730 * 20 18 16 23 23 H 1.48500 * 109.47155 * 239.99746 * 20 18 16 24 24 H 1.09000 * 109.47397 * 300.00277 * 1 2 3 25 25 H 1.08994 * 109.47624 * 60.00510 * 1 2 3 26 26 H 1.09006 * 109.47061 * 180.02562 * 1 2 3 27 27 H 1.07992 * 120.00186 * 300.00200 * 4 2 1 28 28 H 0.96998 * 120.00431 * 0.02562 * 6 5 4 29 29 H 1.07994 * 125.98407 * 0.02562 * 10 9 7 30 30 H 1.08002 * 126.28953 * 180.24678 * 14 12 11 31 31 H 1.08997 * 109.47198 * 54.99937 * 15 2 1 32 32 H 1.08999 * 109.46974 * 174.99939 * 15 2 1 33 33 H 0.97006 * 120.00171 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 2.7682 -0.0884 -2.0731 6 7 3.2348 -0.7487 -3.2172 7 6 4.0100 -0.0938 -4.1042 8 8 4.3049 1.0702 -3.9111 9 6 4.5005 -0.7884 -5.3082 10 6 4.2433 -2.1312 -5.6653 11 7 4.8455 -2.3702 -6.7976 12 7 5.5142 -1.2118 -7.2087 13 1 6.0416 -1.1186 -8.0174 14 6 5.2976 -0.2491 -6.2980 15 6 2.0399 -0.7212 1.2493 16 6 1.6413 0.0571 2.4766 17 1 1.0799 0.9742 2.3757 18 6 1.9932 -0.4015 3.7283 19 7 2.6763 -1.5185 3.8512 20 14 1.4996 0.5637 5.2496 21 1 0.7431 1.7753 4.8432 22 1 0.6458 -0.2851 6.1190 23 1 2.7179 0.9686 5.9959 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.7715 -1.7444 -1.4013 28 1 3.0000 -1.6772 -3.3710 29 1 3.6488 -2.8349 -5.1018 30 1 5.6771 0.7615 -6.3335 31 1 1.6053 -1.7197 1.2953 32 1 3.1262 -0.7994 1.2056 33 1 2.9236 -1.8414 4.7319 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863154575.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:38 Heat of formation + Delta-G solvation = 38.282630 kcal Electronic energy + Delta-G solvation = -16870.967453 eV Core-core repulsion = 13932.951249 eV Total energy + Delta-G solvation = -2938.016204 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.37792 -40.21394 -38.29944 -36.30225 -34.36236 -33.14831 -32.14243 -30.92770 -28.81900 -26.09170 -24.67356 -23.08386 -22.79901 -21.37772 -20.56501 -19.59686 -18.73424 -17.99465 -17.11435 -16.49305 -16.37233 -15.60025 -15.48701 -15.35175 -14.97984 -14.74605 -14.43407 -13.89189 -13.67704 -13.17456 -12.80352 -12.68517 -12.49244 -12.29453 -12.19538 -11.74600 -11.31784 -11.22838 -11.13529 -10.91124 -10.81846 -10.49461 -10.06750 -9.69415 -8.13485 -6.21478 0.39832 0.94353 1.32001 1.44667 1.45962 1.48323 1.58679 1.91938 2.45768 2.47948 3.21421 3.49583 3.84952 3.91820 3.96415 4.10923 4.33382 4.49807 4.61928 4.65719 4.75307 5.06000 5.24754 5.26154 5.34214 5.52146 5.57702 5.77836 5.90708 6.16463 6.20467 6.31058 6.43030 6.65273 6.93507 7.46551 7.51331 8.98686 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.046083 B = 0.003370 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.456700 B = 8305.632410 C = 8356.896328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.035 4.035 3 H 0.060 0.940 4 C 0.111 3.889 5 N -0.289 5.289 6 N -0.579 5.579 7 C 0.609 3.391 8 O -0.570 6.570 9 C -0.317 4.317 10 C 0.091 3.909 11 N -0.316 5.316 12 N -0.446 5.446 13 H 0.462 0.538 14 C 0.157 3.843 15 C 0.040 3.960 16 C -0.527 4.527 17 H 0.065 0.935 18 C 0.001 3.999 19 N -0.934 5.934 20 Si 0.959 3.041 21 H -0.261 1.261 22 H -0.278 1.278 23 H -0.285 1.285 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.134 0.866 28 H 0.399 0.601 29 H 0.215 0.785 30 H 0.217 0.783 31 H 0.011 0.989 32 H -0.016 1.016 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.639 -2.133 -21.429 21.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.056 4.056 3 H 0.078 0.922 4 C -0.104 4.104 5 N -0.092 5.092 6 N -0.321 5.321 7 C 0.399 3.601 8 O -0.448 6.448 9 C -0.334 4.334 10 C -0.097 4.097 11 N -0.137 5.137 12 N -0.153 5.153 13 H 0.311 0.689 14 C 0.001 3.999 15 C 0.002 3.998 16 C -0.565 4.565 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.575 5.575 20 Si 0.784 3.216 21 H -0.185 1.185 22 H -0.204 1.204 23 H -0.211 1.211 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.151 0.849 28 H 0.239 0.761 29 H 0.232 0.768 30 H 0.234 0.766 31 H 0.030 0.970 32 H 0.002 0.998 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.657 -1.524 -22.470 22.678 hybrid contribution -0.219 -0.338 1.371 1.429 sum 2.438 -1.862 -21.099 21.321 Atomic orbital electron populations 1.21589 0.92168 1.02470 1.01616 1.20112 0.97265 0.98589 0.89611 0.92173 1.26497 0.91714 0.98920 0.93252 1.74423 1.12131 1.26392 0.96214 1.46659 1.51298 1.14406 1.19748 1.17498 0.76200 0.85209 0.81151 1.90754 1.58590 1.18352 1.77142 1.20027 1.15867 0.96920 1.00573 1.24506 0.97224 0.94722 0.93263 1.77152 1.14166 1.06860 1.15499 1.46262 1.40220 1.07417 1.21361 0.68879 1.23411 0.92873 0.96260 0.87315 1.18961 0.94275 0.95398 0.91181 1.21637 1.34445 1.08680 0.91725 0.91692 1.25878 0.95277 0.96055 1.02484 1.70090 1.40261 1.22899 1.24207 0.85489 0.77909 0.79025 0.79182 1.18501 1.20376 1.21138 0.92204 0.92151 0.91777 0.84878 0.76076 0.76849 0.76641 0.97016 0.99757 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.00 8.98 71.98 0.65 -3.36 16 2 C -0.03 -1.37 2.75 -11.54 -0.03 -1.40 16 3 H 0.06 2.60 8.11 -2.39 -0.02 2.58 16 4 C 0.11 3.74 9.66 88.67 0.86 4.60 16 5 N -0.29 -10.62 10.93 -50.47 -0.55 -11.17 16 6 N -0.58 -16.77 6.24 -175.88 -1.10 -17.87 16 7 C 0.61 18.46 7.93 86.66 0.69 19.14 16 8 O -0.57 -22.44 17.24 -4.11 -0.07 -22.51 16 9 C -0.32 -6.65 6.13 -20.15 -0.12 -6.78 16 10 C 0.09 1.52 11.50 85.65 0.99 2.51 16 11 N -0.32 -5.42 12.63 -56.26 -0.71 -6.13 16 12 N -0.45 -5.22 7.29 -56.30 -0.41 -5.63 16 13 H 0.46 1.84 8.96 -213.43 -1.91 -0.08 16 14 C 0.16 2.33 11.82 84.28 1.00 3.32 16 15 C 0.04 2.01 4.43 29.85 0.13 2.14 16 16 C -0.53 -28.75 8.41 25.60 0.22 -28.54 16 17 H 0.06 3.41 7.06 -2.91 -0.02 3.39 16 18 C 0.00 0.03 5.46 84.66 0.46 0.49 16 19 N -0.93 -55.70 13.29 21.45 0.28 -55.41 16 20 Si 0.96 43.75 29.54 68.60 2.03 45.77 16 21 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 23 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 24 H 0.06 2.15 6.95 -2.39 -0.02 2.13 16 25 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 27 H 0.13 3.54 8.00 -2.91 -0.02 3.51 16 28 H 0.40 8.04 7.58 -213.32 -1.62 6.42 16 29 H 0.22 2.17 7.50 -2.91 -0.02 2.15 16 30 H 0.22 2.15 8.06 -2.91 -0.02 2.12 16 31 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 32 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 33 H 0.26 14.71 8.31 -92.70 -0.77 13.94 16 Total: -1.00 -77.80 298.64 1.91 -75.89 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -2.38 Total: 4.94 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 4.83 Total: -7.87 kcal Atomic # 7 Polarization: -93.74 SS G_CDS: -2.49 Total: -96.22 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.07 Total: -22.51 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -77.80 1.91 -75.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863154575.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.171 kcal (2) G-P(sol) polarization free energy of solvation -77.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds