Wall clock time and date at job start Mon Mar 30 2020 18:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29953 * 125.30284 * 2 1 4 4 O 1.41877 * 107.41389 * 180.02562 * 3 2 1 5 5 N 1.41877 * 106.38549 * 359.78497 * 4 3 2 6 6 C 1.29949 * 107.41494 * 0.36479 * 5 4 3 7 7 C 1.50706 * 125.30477 * 179.89694 * 6 5 4 8 8 N 1.46902 * 109.46577 * 269.69147 * 7 6 5 9 9 C 1.46905 * 110.99800 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.47234 * 180.02562 * 9 8 7 11 11 H 1.09003 * 109.46965 * 305.00257 * 10 9 8 12 12 C 1.47201 * 109.47129 * 65.00133 * 10 9 8 13 13 N 6.62339 * 106.19443 * 219.27713 * 2 1 3 14 14 C 1.53003 * 109.46996 * 185.00028 * 10 9 8 15 15 C 1.50704 * 109.46946 * 175.00186 * 14 10 9 16 16 H 1.08005 * 119.99693 * 359.97438 * 15 14 10 17 17 C 1.37872 * 119.99954 * 180.02562 * 15 14 10 18 18 N 1.31516 * 120.00099 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00133 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47102 * 59.99764 * 19 17 15 21 21 H 1.48495 * 109.47432 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47023 * 299.99966 * 19 17 15 23 23 H 1.09001 * 109.46756 * 269.99795 * 1 2 3 24 24 H 1.08998 * 109.46929 * 29.99585 * 1 2 3 25 25 H 1.08999 * 109.47139 * 149.99803 * 1 2 3 26 26 H 1.09000 * 109.47318 * 29.68655 * 7 6 5 27 27 H 1.09000 * 109.47161 * 149.69285 * 7 6 5 28 28 H 1.00896 * 111.00594 * 303.95433 * 8 7 6 29 29 H 1.09002 * 109.47091 * 300.00139 * 9 8 7 30 30 H 1.09001 * 109.46854 * 60.00166 * 9 8 7 31 31 H 1.09000 * 109.46885 * 294.99930 * 14 10 9 32 32 H 1.08998 * 109.47156 * 55.00231 * 14 10 9 33 33 H 0.97000 * 120.00492 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0606 0.0000 4 8 3.6082 0.6247 -0.0006 5 7 3.5710 -0.7935 0.0041 6 6 2.3213 -1.1498 -0.0007 7 6 1.8209 -2.5714 -0.0004 8 7 1.6574 -3.0331 -1.3853 9 6 1.1703 -4.4185 -1.4243 10 6 1.0134 -4.8632 -2.8798 11 1 0.3678 -4.1605 -3.4068 12 6 2.3346 -4.8966 -3.5279 13 7 3.3543 -4.9237 -4.0267 14 6 0.3892 -6.2595 -2.9220 15 6 0.1215 -6.6470 -4.3535 16 1 0.3712 -5.9653 -5.1532 17 6 -0.4431 -7.8712 -4.6423 18 7 -0.7485 -8.7006 -3.6684 19 14 -0.7756 -8.3513 -6.4166 20 1 0.5009 -8.3569 -7.1754 21 1 -1.3824 -9.7060 -6.4575 22 1 -1.7102 -7.3722 -7.0275 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5139 26 1 2.5401 -3.2097 0.5128 27 1 0.8611 -2.6186 0.5141 28 1 1.0447 -2.4195 -1.9012 29 1 1.8853 -5.0693 -0.9210 30 1 0.2061 -4.4789 -0.9195 31 1 1.0754 -6.9778 -2.4734 32 1 -0.5479 -6.2555 -2.3653 33 1 -1.1461 -9.5618 -3.8714 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871937186.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:41 Heat of formation + Delta-G solvation = 104.130421 kcal Electronic energy + Delta-G solvation = -17139.177114 eV Core-core repulsion = 14204.016285 eV Total energy + Delta-G solvation = -2935.160830 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.69230 -37.65425 -35.76831 -34.38772 -33.74009 -32.94751 -31.39415 -29.09462 -27.75773 -25.54143 -22.83621 -22.51374 -21.82984 -20.84239 -17.42582 -17.01342 -16.55768 -16.30911 -15.51374 -14.96275 -14.81040 -14.40602 -14.31296 -13.78065 -13.66456 -13.31605 -12.91936 -12.81107 -12.38428 -12.07113 -11.96044 -11.84272 -11.67912 -11.32714 -11.11240 -11.08538 -10.90273 -10.76239 -10.59806 -10.33208 -9.63521 -9.31930 -8.67924 -8.50139 -6.15192 -4.18723 0.31013 1.67634 2.42915 2.88570 3.27684 3.32442 3.36207 3.53473 3.68130 3.77230 4.07204 4.36966 4.39532 4.57536 4.80027 4.87472 4.91642 4.93922 5.21765 5.23228 5.31018 5.42001 5.51249 5.57324 5.82783 6.20853 6.35965 6.69289 6.71680 7.11804 7.33408 7.44698 7.79604 8.16271 8.52454 8.85693 9.47322 10.95572 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.038600 B = 0.003911 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.215012 B = 7157.731482 C = 7387.260685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.078 3.922 3 N -0.281 5.281 4 O 0.022 5.978 5 N -0.251 5.251 6 C 0.078 3.922 7 C 0.122 3.878 8 N -0.687 5.687 9 C 0.067 3.933 10 C 0.011 3.989 11 H 0.100 0.900 12 C 0.250 3.750 13 N -0.474 5.474 14 C 0.032 3.968 15 C -0.529 4.529 16 H 0.056 0.944 17 C 0.064 3.936 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.275 1.275 23 H 0.097 0.903 24 H 0.091 0.909 25 H 0.094 0.906 26 H 0.103 0.897 27 H 0.071 0.929 28 H 0.345 0.655 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.027 0.973 32 H 0.039 0.961 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.061 13.806 10.723 17.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.104 4.104 3 N -0.027 5.027 4 O -0.119 6.119 5 N 0.005 4.995 6 C -0.106 4.106 7 C -0.008 4.008 8 N -0.320 5.320 9 C -0.062 4.062 10 C -0.012 4.012 11 H 0.118 0.882 12 C -0.067 4.067 13 N -0.150 5.150 14 C -0.006 4.006 15 C -0.567 4.567 16 H 0.075 0.925 17 C -0.138 4.138 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.200 1.200 23 H 0.115 0.885 24 H 0.110 0.890 25 H 0.113 0.887 26 H 0.122 0.878 27 H 0.089 0.911 28 H 0.164 0.836 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.266 14.248 9.951 17.381 hybrid contribution -2.022 -0.639 -0.605 2.205 sum -1.755 13.609 9.346 16.602 Atomic orbital electron populations 1.20597 0.84135 1.05510 1.04897 1.24647 1.00357 0.89051 0.96375 1.79907 0.89279 1.19777 1.13720 1.93405 1.20104 1.13944 1.84487 1.80015 1.17714 0.90736 1.11020 1.24549 0.89783 0.98883 0.97348 1.20547 1.01150 0.86615 0.92474 1.60455 1.56136 1.04603 1.10851 1.22152 0.99748 0.87357 0.96941 1.19212 0.86575 1.03542 0.91823 0.88169 1.28814 0.94108 0.91230 0.92548 1.80989 1.13082 1.10723 1.10221 1.19170 0.96195 0.86905 0.98374 1.21090 1.41584 1.01996 0.92014 0.92529 1.24937 0.95293 0.96334 0.97282 1.69918 1.42440 1.09080 1.31560 0.86652 0.78695 0.77693 0.85043 1.20191 1.21166 1.20046 0.88465 0.89012 0.88692 0.87849 0.91141 0.83640 0.89848 0.92402 0.95449 0.94326 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.43 10.05 36.01 0.36 -0.07 16 2 C 0.08 0.72 7.19 -82.38 -0.59 0.13 16 3 N -0.28 -3.42 12.98 33.74 0.44 -2.99 16 4 O 0.02 0.31 13.71 12.02 0.16 0.47 16 5 N -0.25 -3.46 12.98 33.74 0.44 -3.02 16 6 C 0.08 0.82 6.70 -82.38 -0.55 0.27 16 7 C 0.12 1.04 5.85 -4.97 -0.03 1.01 16 8 N -0.69 -7.39 6.19 -115.05 -0.71 -8.11 16 9 C 0.07 0.81 5.05 -3.82 -0.02 0.79 16 10 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 11 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 12 C 0.25 5.02 13.67 -20.78 -0.28 4.73 16 13 N -0.47 -10.65 18.53 42.13 0.78 -9.87 16 14 C 0.03 0.69 4.42 -27.88 -0.12 0.57 16 15 C -0.53 -13.50 8.60 -34.44 -0.30 -13.80 16 16 H 0.06 1.44 7.59 -52.48 -0.40 1.04 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -24.69 13.29 55.43 0.74 -23.95 16 19 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 24 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.09 0.29 7.77 -51.93 -0.40 -0.11 16 26 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 0.37 7.78 -51.93 -0.40 -0.03 16 28 H 0.35 3.15 8.72 -39.29 -0.34 2.80 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 303.19 15.07 4.57 4.57 Total: -1.00 -32.46 303.19 -4.52 -36.98 By element: Atomic # 1 Polarization: -0.96 SS G_CDS: -4.07 Total: -5.02 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -1.85 Total: -4.80 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 1.68 Total: -47.93 kcal Atomic # 8 Polarization: 0.31 SS G_CDS: 0.16 Total: 0.47 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.46 -4.52 -36.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871937186.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.112 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds