Wall clock time and date at job start Mon Mar 30 2020 18:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46584 * 156.33720 * 3 2 1 5 5 N 1.46903 * 109.46740 * 179.54459 * 4 3 2 6 6 C 1.46904 * 111.00016 * 288.00243 * 5 4 3 7 7 C 1.50697 * 109.47085 * 160.35589 * 6 5 4 8 8 H 1.07998 * 120.00458 * 4.66411 * 7 6 5 9 9 C 1.37878 * 119.99797 * 184.65665 * 7 6 5 10 10 N 1.31513 * 119.99964 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99729 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47117 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.46866 * 120.00435 * 11 9 7 14 14 H 1.48503 * 109.46813 * 240.00014 * 11 9 7 15 15 C 1.46895 * 110.99910 * 164.05263 * 5 4 3 16 16 C 1.53002 * 109.47429 * 293.95041 * 15 5 4 17 17 N 1.46492 * 109.47373 * 180.02562 * 16 15 5 18 18 C 1.34597 * 126.44005 * 125.00150 * 17 16 15 19 19 N 1.31068 * 106.68271 * 179.97438 * 18 17 16 20 20 N 1.28842 * 107.99017 * 359.97438 * 19 18 17 21 21 N 1.28739 * 109.39660 * 359.73891 * 20 19 18 22 22 H 1.08998 * 109.46690 * 36.33972 * 3 2 1 23 23 H 1.08995 * 109.47237 * 276.33888 * 3 2 1 24 24 H 1.08995 * 109.47313 * 59.54423 * 4 3 2 25 25 H 1.08998 * 109.47498 * 299.54033 * 4 3 2 26 26 H 1.08993 * 109.47512 * 280.36307 * 6 5 4 27 27 H 1.09009 * 109.46494 * 40.35916 * 6 5 4 28 28 H 0.97004 * 119.99900 * 179.97438 * 10 9 7 29 29 H 1.08996 * 109.47466 * 53.95329 * 15 5 4 30 30 H 1.09005 * 109.47517 * 173.95323 * 15 5 4 31 31 H 1.09004 * 109.46971 * 300.00279 * 16 15 5 32 32 H 1.09005 * 109.46541 * 59.99684 * 16 15 5 33 33 H 1.08002 * 126.65703 * 0.03486 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.3222 -0.5790 5 7 4.5863 1.3273 -0.5689 6 6 5.1029 1.4680 0.7991 7 6 6.5335 0.9967 0.8467 8 1 7.0351 0.7005 -0.0627 9 6 7.2021 0.9439 2.0514 10 7 6.5913 1.3043 3.1588 11 14 8.9757 0.3604 2.1103 12 1 9.4289 0.0147 0.7391 13 1 9.8343 1.4409 2.6583 14 1 9.0735 -0.8390 2.9805 15 6 5.1150 2.3833 -1.4424 16 6 4.7622 2.0663 -2.8971 17 7 5.2900 3.1191 -3.7683 18 6 6.1058 2.9481 -4.8251 19 7 6.3338 4.1397 -5.3211 20 7 5.6912 4.9978 -4.6065 21 7 5.0547 4.3840 -3.6709 22 1 2.9717 -0.8270 -0.6090 23 1 2.9714 -0.1126 1.0213 24 1 2.7469 2.1503 0.0252 25 1 2.7607 1.4316 -1.6031 26 1 5.0549 2.5145 1.0998 27 1 4.4994 0.8665 1.4790 28 1 7.0616 1.2667 4.0064 29 1 4.6754 3.3406 -1.1623 30 1 6.1985 2.4356 -1.3346 31 1 5.2018 1.1090 -3.1772 32 1 3.6787 2.0140 -3.0049 33 1 6.4958 2.0108 -5.1935 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878309327.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:51 Heat of formation + Delta-G solvation = 149.558647 kcal Electronic energy + Delta-G solvation = -17557.267135 eV Core-core repulsion = 14656.368973 eV Total energy + Delta-G solvation = -2900.898163 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.124 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.10726 -38.12615 -36.48254 -35.38924 -32.87561 -32.41557 -31.48038 -29.52502 -26.82688 -24.56834 -23.74938 -23.44515 -22.09506 -20.19381 -17.80953 -17.45122 -16.89216 -16.64806 -15.93604 -15.25597 -14.93737 -14.63958 -14.34506 -13.83017 -13.45733 -13.13120 -12.83188 -12.48905 -12.27728 -12.23222 -11.89107 -11.73075 -11.47932 -11.16651 -11.10074 -10.98237 -10.87109 -10.74574 -10.46534 -10.27419 -9.92767 -9.46605 -8.61430 -7.77829 -6.21078 -4.23915 1.30433 2.02579 2.28754 2.83285 2.89672 3.20159 3.29228 3.31005 3.96686 4.23224 4.27651 4.29353 4.62839 4.79318 4.95487 5.08772 5.16547 5.18162 5.31413 5.41784 5.61531 5.67974 5.86535 5.97318 6.06587 6.10805 6.25230 6.80833 7.01181 7.51403 7.63504 7.69668 7.86753 8.20416 8.64175 8.82412 9.41819 10.89255 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.011517 B = 0.007362 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.609037 B = 3802.246568 C = 5873.032384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.217 3.783 3 C -0.026 4.026 4 C 0.052 3.948 5 N -0.528 5.528 6 C 0.189 3.811 7 C -0.512 4.512 8 H 0.064 0.936 9 C 0.058 3.942 10 N -0.895 5.895 11 Si 0.897 3.103 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.283 1.283 15 C 0.052 3.948 16 C 0.110 3.890 17 N -0.299 5.299 18 C 0.159 3.841 19 N -0.315 5.315 20 N -0.085 5.085 21 N -0.090 5.090 22 H 0.116 0.884 23 H 0.119 0.881 24 H 0.040 0.960 25 H 0.068 0.932 26 H -0.004 1.004 27 H 0.043 0.957 28 H 0.263 0.737 29 H 0.045 0.955 30 H 0.096 0.904 31 H 0.123 0.877 32 H 0.102 0.898 33 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.449 -2.907 -10.555 11.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.101 4.101 3 C -0.066 4.066 4 C -0.078 4.078 5 N -0.253 5.253 6 C 0.065 3.935 7 C -0.551 4.551 8 H 0.082 0.918 9 C -0.144 4.144 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.209 1.209 15 C -0.077 4.077 16 C -0.011 4.011 17 N -0.101 5.101 18 C -0.140 4.140 19 N -0.163 5.163 20 N -0.079 5.079 21 N -0.076 5.076 22 H 0.134 0.866 23 H 0.137 0.863 24 H 0.059 0.941 25 H 0.086 0.914 26 H 0.014 0.986 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.114 0.886 31 H 0.141 0.859 32 H 0.120 0.880 33 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -4.097 -1.944 -10.574 11.505 hybrid contribution 1.206 -0.690 0.730 1.570 sum -2.890 -2.634 -9.844 10.592 Atomic orbital electron populations 1.81185 1.13259 1.09111 1.09766 1.29429 0.95457 0.92699 0.92483 1.19352 0.80112 1.00953 1.06219 1.22020 0.90617 0.95079 1.00049 1.62100 1.03986 1.44870 1.14382 1.19901 0.96199 0.96114 0.81289 1.21098 0.96316 1.44091 0.93581 0.91753 1.24970 0.98462 0.95363 0.95581 1.69939 1.37143 1.47822 0.98483 0.86463 0.84482 0.78422 0.78184 1.19667 1.21090 1.20904 1.22176 1.02986 0.94124 0.88443 1.22558 1.00920 0.86902 0.90732 1.48805 1.31901 1.07408 1.22027 1.27714 0.95747 1.01526 0.89005 1.74956 1.20051 0.97624 1.23699 1.78617 1.06410 1.22628 1.00250 1.78889 1.19906 0.89365 1.19462 0.86559 0.86323 0.94128 0.91350 0.98583 0.93877 0.92720 0.93651 0.88610 0.85871 0.88033 0.75017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.05 18.54 42.15 0.78 -6.27 16 2 C 0.22 2.79 15.43 -20.76 -0.32 2.47 16 3 C -0.03 -0.29 5.77 -29.52 -0.17 -0.46 16 4 C 0.05 0.64 4.79 -3.82 -0.02 0.62 16 5 N -0.53 -8.06 4.38 -236.07 -1.03 -9.10 16 6 C 0.19 3.96 4.59 -4.98 -0.02 3.94 16 7 C -0.51 -12.24 8.61 -34.44 -0.30 -12.54 16 8 H 0.06 1.51 7.66 -52.49 -0.40 1.10 16 9 C 0.06 1.48 5.46 -17.82 -0.10 1.39 16 10 N -0.89 -24.14 13.29 55.43 0.74 -23.40 16 11 Si 0.90 19.74 29.54 -169.99 -5.02 14.72 16 12 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 C 0.05 0.73 4.93 -3.83 -0.02 0.72 16 16 C 0.11 1.08 6.45 -4.04 -0.03 1.05 16 17 N -0.30 -3.54 3.44 -62.55 -0.22 -3.76 16 18 C 0.16 1.66 12.79 -90.39 -1.16 0.51 16 19 N -0.31 -4.50 12.36 29.59 0.37 -4.13 16 20 N -0.08 -1.38 13.43 60.35 0.81 -0.57 16 21 N -0.09 -1.36 13.08 60.35 0.79 -0.57 16 22 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.12 1.49 6.53 -51.93 -0.34 1.15 16 24 H 0.04 0.55 8.05 -51.93 -0.42 0.13 16 25 H 0.07 0.67 5.94 -51.93 -0.31 0.37 16 26 H 0.00 -0.09 8.00 -51.93 -0.42 -0.50 16 27 H 0.04 0.94 6.24 -51.92 -0.32 0.62 16 28 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 30 H 0.10 1.58 7.32 -51.93 -0.38 1.20 16 31 H 0.12 0.89 8.08 -51.93 -0.42 0.47 16 32 H 0.10 0.85 6.28 -51.93 -0.33 0.53 16 33 H 0.23 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 294.91 15.07 4.44 4.44 Total: -1.00 -30.79 294.91 -4.20 -34.99 By element: Atomic # 1 Polarization: -0.32 SS G_CDS: -3.73 Total: -4.06 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -2.13 Total: -2.30 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 2.23 Total: -47.80 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.79 -4.20 -34.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878309327.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.551 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds