Wall clock time and date at job start Mon Mar 30 2020 18:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00108 * 2 1 4 4 H 1.48500 * 109.47201 * 240.00188 * 3 2 1 5 5 H 1.48508 * 109.46926 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47064 * 119.99546 * 3 2 1 7 7 C 1.37876 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99933 * 161.90092 * 7 2 1 9 9 C 1.50701 * 120.00159 * 341.89350 * 7 2 1 10 10 C 1.53002 * 115.55949 * 322.37049 * 9 7 2 11 11 O 1.45201 * 109.47193 * 268.77585 * 10 9 7 12 12 C 1.34228 * 116.99756 * 184.71165 * 11 10 9 13 13 O 1.20821 * 120.00538 * 358.64113 * 12 11 10 14 14 C 1.50704 * 119.99863 * 178.63545 * 12 11 10 15 15 C 1.52992 * 115.55172 * 158.21683 * 14 12 11 16 16 C 1.53005 * 117.49824 * 34.33507 * 15 14 12 17 17 C 1.53002 * 117.50052 * 325.67573 * 15 14 12 18 18 C 1.53005 * 117.49695 * 12.51103 * 14 12 11 19 19 C 1.53004 * 117.49948 * 303.88920 * 14 12 11 20 20 C 1.52993 * 117.50137 * 176.68236 * 9 7 2 21 21 C 1.52992 * 60.03123 * 252.49848 * 20 9 7 22 22 H 0.97001 * 119.99722 * 5.03174 * 1 2 3 23 23 H 1.09000 * 109.47082 * 28.78133 * 10 9 7 24 24 H 1.09001 * 109.46938 * 148.77630 * 10 9 7 25 25 H 1.09003 * 115.55549 * 180.02562 * 15 14 12 26 26 H 1.08999 * 117.49683 * 359.97438 * 16 15 14 27 27 H 1.08996 * 117.50250 * 145.01982 * 16 15 14 28 28 H 1.09006 * 117.49759 * 214.98087 * 17 15 14 29 29 H 1.09004 * 117.49642 * 359.97194 * 17 15 14 30 30 H 1.09000 * 117.49623 * 359.97438 * 18 14 12 31 31 H 1.08996 * 117.49622 * 145.01997 * 18 14 12 32 32 H 1.08995 * 117.49723 * 214.97744 * 19 14 12 33 33 H 1.09001 * 117.49542 * 359.97438 * 19 14 12 34 34 H 1.09004 * 117.49978 * 359.97438 * 20 9 7 35 35 H 1.08999 * 117.50246 * 144.99215 * 20 9 7 36 36 H 1.09005 * 117.49838 * 107.50346 * 21 20 9 37 37 H 1.09001 * 117.49886 * 252.51901 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0445 -1.2171 -0.2911 9 6 1.3070 -2.4670 0.4045 10 6 0.3050 -2.3340 1.5531 11 8 0.9797 -2.5807 2.8150 12 6 0.2179 -2.5983 3.9200 13 8 -0.9693 -2.3895 3.8388 14 6 0.8435 -2.8788 5.2621 15 6 0.0540 -2.3823 6.4748 16 6 -1.4731 -2.4172 6.3862 17 6 -0.7326 -1.0791 6.3205 18 6 2.3706 -2.8449 5.3506 19 6 1.6300 -4.1821 5.4164 20 6 2.1031 -3.7700 0.3089 21 6 0.9881 -3.4801 -0.6977 22 1 -0.4850 0.8368 -0.0737 23 1 -0.1135 -1.3276 1.5554 24 1 -0.4968 -3.0606 1.4217 25 1 0.5066 -2.5848 7.4456 26 1 -1.9152 -2.7934 5.4636 27 1 -2.0253 -2.6425 7.2985 28 1 -0.7977 -0.4246 7.1898 29 1 -0.6871 -0.5751 5.3550 30 1 2.9227 -2.6202 4.4380 31 1 2.8130 -2.4687 6.2730 32 1 1.5851 -4.6856 6.3821 33 1 1.6945 -4.8369 4.5474 34 1 3.1313 -3.7067 -0.0474 35 1 1.9134 -4.5324 1.0645 36 1 1.2828 -3.2259 -1.7159 37 1 0.0645 -4.0514 -0.6042 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885730259.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:53 Heat of formation + Delta-G solvation = -5.669217 kcal Electronic energy + Delta-G solvation = -18812.770112 eV Core-core repulsion = 15944.095605 eV Total energy + Delta-G solvation = -2868.674507 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.27668 -37.83698 -36.50340 -35.62785 -34.54918 -32.27601 -26.93772 -25.54051 -24.46534 -22.59655 -22.22238 -21.85920 -21.20680 -19.20408 -19.12645 -16.72701 -16.51724 -15.72818 -15.62678 -15.13547 -14.62891 -14.36412 -13.80747 -13.38368 -12.99341 -12.38152 -12.16972 -11.89113 -11.70305 -11.49112 -11.24716 -11.18139 -10.96473 -10.90959 -10.71847 -10.53694 -10.33532 -9.98631 -9.83779 -9.67984 -9.36238 -9.26395 -8.98032 -8.79925 -8.16038 -6.17255 -4.15225 2.64489 3.25088 3.31754 3.32961 3.35149 3.72361 4.30212 4.31458 4.48865 4.70794 4.89924 5.01122 5.18699 5.29868 5.38853 5.40112 5.58117 5.66005 5.89257 5.90395 5.96979 5.99925 6.09973 6.24729 6.26490 6.34973 6.39173 6.54800 6.65062 6.69659 6.80644 6.95742 7.26841 7.40832 7.52292 7.85298 8.31558 8.53432 8.78152 9.41679 10.87143 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020786 B = 0.007370 C = 0.006522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.705283 B = 3798.063076 C = 4292.098083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.069 3.931 3 Si 0.893 3.107 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.491 4.491 8 H 0.065 0.935 9 C 0.049 3.951 10 C 0.100 3.900 11 O -0.346 6.346 12 C 0.489 3.511 13 O -0.512 6.512 14 C -0.110 4.110 15 C -0.115 4.115 16 C -0.176 4.176 17 C -0.173 4.173 18 C -0.147 4.147 19 C -0.146 4.146 20 C -0.197 4.197 21 C -0.193 4.193 22 H 0.267 0.733 23 H 0.118 0.882 24 H 0.038 0.962 25 H 0.112 0.888 26 H 0.124 0.876 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.727 -5.342 11.398 12.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.528 4.528 8 H 0.084 0.916 9 C 0.048 3.952 10 C 0.028 3.972 11 O -0.262 6.262 12 C 0.332 3.668 13 O -0.402 6.402 14 C -0.112 4.112 15 C -0.133 4.133 16 C -0.213 4.213 17 C -0.210 4.210 18 C -0.184 4.184 19 C -0.183 4.183 20 C -0.234 4.234 21 C -0.231 4.231 22 H 0.077 0.923 23 H 0.136 0.864 24 H 0.056 0.944 25 H 0.130 0.870 26 H 0.142 0.858 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.115 0.885 30 H 0.134 0.866 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.215 -5.124 11.368 12.529 hybrid contribution 0.219 0.866 -0.157 0.907 sum 1.434 -4.258 11.212 12.078 Atomic orbital electron populations 1.69837 1.06175 1.27544 1.47755 1.25021 0.94789 0.99434 0.94199 0.86626 0.79857 0.82532 0.78965 1.20033 1.21114 1.19836 1.20482 0.96918 0.89755 1.45631 0.91638 1.18876 0.95482 0.89222 0.91587 1.23151 0.93140 1.03994 0.76913 1.86412 1.42648 1.80562 1.16545 1.22182 0.85248 0.73474 0.85869 1.90513 1.16730 1.46046 1.86910 1.20454 0.94722 1.05377 0.90600 1.21394 0.93636 1.02942 0.95361 1.23378 0.92881 1.00765 1.04227 1.22943 1.04183 0.90684 1.03179 1.23122 0.91097 0.99463 1.04703 1.23028 1.01301 0.90096 1.03848 1.22762 0.96095 1.01982 1.02572 1.23037 0.97710 1.06170 0.96170 0.92311 0.86421 0.94406 0.86989 0.85810 0.89717 0.89153 0.88495 0.86622 0.87980 0.87775 0.87862 0.90337 0.91187 0.89802 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.61 11.14 55.43 0.62 -23.99 16 2 C 0.07 1.87 5.02 -17.82 -0.09 1.78 16 3 Si 0.89 20.90 29.58 -169.99 -5.03 15.87 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.49 -13.37 8.99 -34.44 -0.31 -13.67 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 9 C 0.05 1.23 2.03 -155.63 -0.32 0.91 16 10 C 0.10 2.50 5.26 37.16 0.20 2.70 16 11 O -0.35 -7.78 9.27 -39.25 -0.36 -8.14 16 12 C 0.49 9.90 7.01 36.01 0.25 10.16 16 13 O -0.51 -11.34 12.17 -18.75 -0.23 -11.56 16 14 C -0.11 -1.71 2.47 -155.66 -0.38 -2.10 16 15 C -0.12 -1.59 5.85 -90.62 -0.53 -2.12 16 16 C -0.18 -2.54 9.69 -26.69 -0.26 -2.80 16 17 C -0.17 -2.56 9.72 -26.69 -0.26 -2.82 16 18 C -0.15 -1.95 9.78 -26.73 -0.26 -2.21 16 19 C -0.15 -1.82 9.95 -26.73 -0.27 -2.08 16 20 C -0.20 -4.28 9.76 -26.74 -0.26 -4.54 16 21 C -0.19 -4.40 9.88 -26.70 -0.26 -4.66 16 22 H 0.27 7.16 8.32 -40.82 -0.34 6.82 16 23 H 0.12 3.29 5.38 -51.93 -0.28 3.01 16 24 H 0.04 0.93 7.79 -51.93 -0.40 0.52 16 25 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 26 H 0.12 2.14 5.61 -51.93 -0.29 1.84 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.10 1.73 6.99 -51.93 -0.36 1.37 16 30 H 0.12 1.72 7.69 -51.93 -0.40 1.33 16 31 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.08 1.90 8.14 -51.93 -0.42 1.48 16 37 H 0.07 1.41 8.03 -51.93 -0.42 1.00 16 LS Contribution 309.85 15.07 4.67 4.67 Total: -1.00 -28.93 309.85 -8.59 -37.52 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -5.51 Total: 7.09 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -2.75 Total: -21.46 kcal Atomic # 7 Polarization: -24.61 SS G_CDS: 0.62 Total: -23.99 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.59 Total: -19.71 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.93 -8.59 -37.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885730259.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.856 kcal (2) G-P(sol) polarization free energy of solvation -28.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds