Wall clock time and date at job start Mon Mar 30 2020 18:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00108 * 2 1 4 4 H 1.48500 * 109.47201 * 240.00188 * 3 2 1 5 5 H 1.48508 * 109.46926 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47064 * 119.99546 * 3 2 1 7 7 C 1.37876 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99933 * 161.90092 * 7 2 1 9 9 C 1.50701 * 120.00159 * 341.89350 * 7 2 1 10 10 C 1.53002 * 115.55949 * 322.37049 * 9 7 2 11 11 O 1.45201 * 109.47193 * 268.77585 * 10 9 7 12 12 C 1.34228 * 116.99756 * 184.71165 * 11 10 9 13 13 O 1.20821 * 120.00538 * 358.64113 * 12 11 10 14 14 C 1.50704 * 119.99863 * 178.63545 * 12 11 10 15 15 C 1.52992 * 115.55172 * 158.21683 * 14 12 11 16 16 C 1.53005 * 117.49824 * 34.33507 * 15 14 12 17 17 C 1.53002 * 117.50052 * 325.67573 * 15 14 12 18 18 C 1.53005 * 117.49695 * 12.51103 * 14 12 11 19 19 C 1.53004 * 117.49948 * 303.88920 * 14 12 11 20 20 C 1.52993 * 117.50137 * 176.68236 * 9 7 2 21 21 C 1.52992 * 60.03123 * 252.49848 * 20 9 7 22 22 H 0.97001 * 119.99722 * 5.03174 * 1 2 3 23 23 H 1.09000 * 109.47082 * 28.78133 * 10 9 7 24 24 H 1.09001 * 109.46938 * 148.77630 * 10 9 7 25 25 H 1.09003 * 115.55549 * 180.02562 * 15 14 12 26 26 H 1.08999 * 117.49683 * 359.97438 * 16 15 14 27 27 H 1.08996 * 117.50250 * 145.01982 * 16 15 14 28 28 H 1.09006 * 117.49759 * 214.98087 * 17 15 14 29 29 H 1.09004 * 117.49642 * 359.97194 * 17 15 14 30 30 H 1.09000 * 117.49623 * 359.97438 * 18 14 12 31 31 H 1.08996 * 117.49622 * 145.01997 * 18 14 12 32 32 H 1.08995 * 117.49723 * 214.97744 * 19 14 12 33 33 H 1.09001 * 117.49542 * 359.97438 * 19 14 12 34 34 H 1.09004 * 117.49978 * 359.97438 * 20 9 7 35 35 H 1.08999 * 117.50246 * 144.99215 * 20 9 7 36 36 H 1.09005 * 117.49838 * 107.50346 * 21 20 9 37 37 H 1.09001 * 117.49886 * 252.51901 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0445 -1.2171 -0.2911 9 6 1.3070 -2.4670 0.4045 10 6 0.3050 -2.3340 1.5531 11 8 0.9797 -2.5807 2.8150 12 6 0.2179 -2.5983 3.9200 13 8 -0.9693 -2.3895 3.8388 14 6 0.8435 -2.8788 5.2621 15 6 0.0540 -2.3823 6.4748 16 6 -1.4731 -2.4172 6.3862 17 6 -0.7326 -1.0791 6.3205 18 6 2.3706 -2.8449 5.3506 19 6 1.6300 -4.1821 5.4164 20 6 2.1031 -3.7700 0.3089 21 6 0.9881 -3.4801 -0.6977 22 1 -0.4850 0.8368 -0.0737 23 1 -0.1135 -1.3276 1.5554 24 1 -0.4968 -3.0606 1.4217 25 1 0.5066 -2.5848 7.4456 26 1 -1.9152 -2.7934 5.4636 27 1 -2.0253 -2.6425 7.2985 28 1 -0.7977 -0.4246 7.1898 29 1 -0.6871 -0.5751 5.3550 30 1 2.9227 -2.6202 4.4380 31 1 2.8130 -2.4687 6.2730 32 1 1.5851 -4.6856 6.3821 33 1 1.6945 -4.8369 4.5474 34 1 3.1313 -3.7067 -0.0474 35 1 1.9134 -4.5324 1.0645 36 1 1.2828 -3.2259 -1.7159 37 1 0.0645 -4.0514 -0.6042 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885730259.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:53 Heat of formation + Delta-G solvation = -19.638097 kcal Electronic energy + Delta-G solvation = -18813.375848 eV Core-core repulsion = 15944.095605 eV Total energy + Delta-G solvation = -2869.280243 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.78646 -39.32431 -38.16642 -37.13721 -35.89745 -34.32862 -28.78885 -27.55035 -25.81345 -23.68678 -23.55483 -22.99151 -22.93556 -21.15514 -20.59813 -18.55287 -18.10807 -17.36566 -17.10687 -16.64134 -16.39206 -15.81220 -15.40463 -14.92807 -14.35440 -13.94954 -13.82340 -13.63979 -13.35804 -12.93577 -12.84959 -12.56807 -12.40924 -12.38461 -12.29689 -12.14878 -11.77262 -11.68001 -11.56417 -11.12445 -10.96430 -10.83446 -10.71901 -10.45499 -10.13511 -8.23097 -6.26941 1.14587 1.36842 1.41592 1.48391 1.77284 2.35079 2.57222 2.90080 3.20876 3.37893 3.45098 3.62327 3.94792 3.96988 4.11992 4.18480 4.28059 4.33511 4.35103 4.49131 4.73877 4.76135 4.76931 4.82053 4.88555 4.91313 4.98927 5.04247 5.11613 5.22675 5.25334 5.36642 5.41285 5.48984 5.77008 5.82544 6.27488 6.70243 6.87300 7.32312 8.80668 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020786 B = 0.007370 C = 0.006522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.705283 B = 3798.063076 C = 4292.098083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.022 3.978 3 Si 0.953 3.047 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.010 3.990 10 C 0.113 3.887 11 O -0.353 6.353 12 C 0.476 3.524 13 O -0.540 6.540 14 C -0.140 4.140 15 C -0.096 4.096 16 C -0.181 4.181 17 C -0.188 4.188 18 C -0.138 4.138 19 C -0.120 4.120 20 C -0.169 4.169 21 C -0.190 4.190 22 H 0.265 0.735 23 H 0.083 0.917 24 H 0.030 0.970 25 H 0.157 0.843 26 H 0.087 0.913 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.052 0.948 30 H 0.093 0.907 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.464 -6.276 13.701 15.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.178 4.178 3 Si 0.777 3.223 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.546 4.546 8 H 0.082 0.918 9 C 0.010 3.990 10 C 0.040 3.960 11 O -0.269 6.269 12 C 0.322 3.678 13 O -0.432 6.432 14 C -0.141 4.141 15 C -0.114 4.114 16 C -0.218 4.218 17 C -0.225 4.225 18 C -0.174 4.174 19 C -0.157 4.157 20 C -0.206 4.206 21 C -0.228 4.228 22 H 0.074 0.926 23 H 0.101 0.899 24 H 0.048 0.952 25 H 0.175 0.825 26 H 0.106 0.894 27 H 0.134 0.866 28 H 0.137 0.863 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.155 0.845 32 H 0.162 0.838 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.966 -6.072 13.666 15.246 hybrid contribution -0.356 1.111 -0.882 1.462 sum 2.610 -4.961 12.784 13.959 Atomic orbital electron populations 1.69970 1.07532 1.28005 1.48836 1.25760 0.95471 1.02580 0.94003 0.85686 0.78676 0.78625 0.79291 1.18834 1.21018 1.19517 1.20773 0.96957 0.91115 1.45767 0.91830 1.18972 0.97264 0.90058 0.92711 1.22685 0.93145 1.01634 0.78533 1.86423 1.42907 1.81021 1.16526 1.23368 0.85216 0.72353 0.86901 1.90512 1.18102 1.47221 1.87353 1.20665 0.96347 1.09027 0.88032 1.21625 0.92773 1.00854 0.96132 1.23308 0.94171 1.00377 1.03933 1.22915 1.05989 0.91497 1.02082 1.23230 0.88786 1.00080 1.05349 1.23238 0.97867 0.89013 1.05581 1.22777 0.96118 0.99858 1.01811 1.23030 0.98811 1.05188 0.95774 0.92567 0.89912 0.95215 0.82537 0.89435 0.86585 0.86294 0.92911 0.88883 0.84466 0.83758 0.88668 0.89284 0.89438 0.90015 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.79 11.14 21.45 0.24 -52.56 16 2 C 0.02 1.22 5.02 84.65 0.42 1.65 16 3 Si 0.95 43.51 29.58 68.60 2.03 45.54 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.51 -28.17 8.99 25.60 0.23 -27.94 16 8 H 0.06 3.43 7.88 -2.91 -0.02 3.41 16 9 C 0.01 0.53 2.03 -52.91 -0.11 0.43 16 10 C 0.11 5.89 5.26 71.98 0.38 6.27 16 11 O -0.35 -16.32 9.27 -51.40 -0.48 -16.80 16 12 C 0.48 19.81 7.01 71.24 0.50 20.31 16 13 O -0.54 -25.31 12.17 21.98 0.27 -25.04 16 14 C -0.14 -4.09 2.47 -52.93 -0.13 -4.22 16 15 C -0.10 -2.38 5.85 -10.79 -0.06 -2.44 16 16 C -0.18 -5.04 9.69 30.62 0.30 -4.74 16 17 C -0.19 -5.44 9.72 30.62 0.30 -5.14 16 18 C -0.14 -3.24 9.78 30.60 0.30 -2.94 16 19 C -0.12 -2.56 9.95 30.60 0.30 -2.26 16 20 C -0.17 -7.16 9.76 30.59 0.30 -6.86 16 21 C -0.19 -8.66 9.88 30.61 0.30 -8.36 16 22 H 0.26 14.78 8.32 -92.71 -0.77 14.01 16 23 H 0.08 4.91 5.38 -2.39 -0.01 4.90 16 24 H 0.03 1.53 7.79 -2.39 -0.02 1.51 16 25 H 0.16 2.53 8.14 -2.39 -0.02 2.52 16 26 H 0.09 3.12 5.61 -2.39 -0.01 3.10 16 27 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.12 2.68 8.14 -2.38 -0.02 2.66 16 29 H 0.05 1.98 6.99 -2.38 -0.02 1.97 16 30 H 0.09 2.65 7.69 -2.39 -0.02 2.63 16 31 H 0.14 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.09 3.58 8.14 -2.38 -0.02 3.56 16 35 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 36 H 0.08 3.71 8.14 -2.38 -0.02 3.69 16 37 H 0.08 3.24 8.03 -2.39 -0.02 3.22 16 Total: -1.00 -66.17 309.85 6.14 -60.02 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 1.05 Total: 25.09 kcal Atomic # 6 Polarization: -39.28 SS G_CDS: 3.03 Total: -36.25 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: 0.24 Total: -52.56 kcal Atomic # 8 Polarization: -41.63 SS G_CDS: -0.21 Total: -41.84 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -66.17 6.14 -60.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885730259.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.385 kcal (2) G-P(sol) polarization free energy of solvation -66.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds