Wall clock time and date at job start Mon Mar 30 2020 18:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.47218 * 174.28184 * 3 2 1 6 6 H 1.07994 * 120.00006 * 114.30415 * 5 3 2 7 7 C 1.37876 * 120.00141 * 294.30824 * 5 3 2 8 8 N 1.31513 * 120.00194 * 153.95095 * 7 5 3 9 9 Si 1.86802 * 120.00063 * 333.95379 * 7 5 3 10 10 H 1.48501 * 109.47226 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.46995 * 299.99962 * 9 7 5 12 12 H 1.48504 * 109.47090 * 59.99836 * 9 7 5 13 13 N 1.46495 * 109.47371 * 294.28549 * 3 2 1 14 14 C 1.34779 * 120.00104 * 84.99565 * 13 3 2 15 15 O 1.21567 * 120.00250 * 0.02562 * 14 13 3 16 16 N 1.34778 * 120.00080 * 179.97438 * 14 13 3 17 17 C 1.38886 * 119.99999 * 180.02562 * 16 14 13 18 18 N 1.32420 * 119.20945 * 359.73463 * 17 16 14 19 19 C 1.32276 * 120.75182 * 179.71831 * 18 17 16 20 20 C 1.38609 * 119.18337 * 0.54454 * 19 18 17 21 21 C 1.38607 * 118.54128 * 359.72733 * 20 19 18 22 22 N 1.32278 * 119.18604 * 0.02562 * 21 20 19 23 23 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 24 24 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 26 26 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 27 27 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 28 28 H 0.97007 * 119.99788 * 354.96411 * 8 7 5 29 29 H 0.97005 * 120.00159 * 265.00245 * 13 3 2 30 30 H 0.97003 * 119.99372 * 0.02562 * 16 14 13 31 31 H 1.07998 * 120.40846 * 180.27344 * 19 18 17 32 32 H 1.07998 * 120.72903 * 179.75354 * 20 19 18 33 33 H 1.08002 * 120.40925 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4451 0.1416 6 1 4.1585 1.8024 -0.6686 7 6 4.1237 0.9911 1.3054 8 7 5.3469 0.5087 1.2831 9 14 3.1766 1.0612 2.9140 10 1 4.0193 0.5166 4.0087 11 1 2.8200 2.4705 3.2174 12 1 1.9373 0.2517 2.7945 13 7 1.6671 2.0923 -1.2589 14 6 0.4512 2.6586 -1.3908 15 8 -0.3361 2.6306 -0.4649 16 7 0.1084 3.2569 -2.5488 17 6 -1.1444 3.8408 -2.6845 18 7 -1.9918 3.7961 -1.6679 19 6 -3.1906 4.3472 -1.7619 20 6 -3.5589 4.9663 -2.9461 21 6 -2.6494 4.9899 -3.9918 22 7 -1.4649 4.4239 -3.8294 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 5.8117 0.4042 0.4380 29 1 2.2953 2.1150 -1.9977 30 1 0.7367 3.2795 -3.2875 31 1 -3.8757 4.3112 -0.9278 32 1 -4.5329 5.4208 -3.0515 33 1 -2.9047 5.4646 -4.9277 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888692596.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:05 Heat of formation + Delta-G solvation = 37.909215 kcal Electronic energy + Delta-G solvation = -18166.913165 eV Core-core repulsion = 15228.880768 eV Total energy + Delta-G solvation = -2938.032397 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.16763 -39.40438 -35.80091 -34.42888 -33.62069 -32.50481 -31.59352 -30.33469 -27.17822 -24.72590 -23.93031 -22.34623 -21.14553 -19.69310 -18.78121 -18.25558 -17.25776 -16.40056 -15.91553 -15.70827 -15.06417 -14.49905 -14.25961 -13.81614 -13.47578 -13.31865 -12.62645 -12.55102 -12.32640 -11.75952 -11.13472 -10.85897 -10.81504 -10.73879 -10.68167 -10.40858 -9.84922 -9.78230 -9.58608 -9.18263 -8.85024 -8.61842 -8.25071 -8.05816 -6.61942 -4.20490 0.99205 1.14628 2.55886 3.42849 3.47909 3.53350 3.63790 4.08993 4.13951 4.37045 4.45147 4.61140 4.94636 5.08216 5.12581 5.14325 5.68399 6.06341 6.12442 6.13820 6.30495 6.57607 6.61933 6.80804 6.89909 6.99110 7.11316 7.14491 7.41623 7.46659 7.70706 8.20396 8.25243 8.62906 8.74344 9.12043 9.44338 10.76418 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.041250 B = 0.005415 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.623241 B = 5169.470353 C = 5384.179494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C 0.268 3.732 4 H 0.042 0.958 5 C -0.629 4.629 6 H 0.063 0.937 7 C 0.050 3.950 8 N -0.886 5.886 9 Si 1.029 2.971 10 H -0.283 1.283 11 H -0.280 1.280 12 H -0.272 1.272 13 N -0.711 5.711 14 C 0.686 3.314 15 O -0.528 6.528 16 N -0.653 5.653 17 C 0.561 3.439 18 N -0.496 5.496 19 C 0.178 3.822 20 C -0.279 4.279 21 C 0.177 3.823 22 N -0.560 5.560 23 H 0.048 0.952 24 H 0.028 0.972 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.271 0.729 29 H 0.390 0.610 30 H 0.415 0.585 31 H 0.168 0.832 32 H 0.144 0.856 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.930 6.711 -9.559 18.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.172 4.172 3 C 0.165 3.835 4 H 0.060 0.940 5 C -0.667 4.667 6 H 0.081 0.919 7 C -0.158 4.158 8 N -0.517 5.517 9 Si 0.856 3.144 10 H -0.209 1.209 11 H -0.206 1.206 12 H -0.198 1.198 13 N -0.363 5.363 14 C 0.385 3.615 15 O -0.399 6.399 16 N -0.304 5.304 17 C 0.205 3.795 18 N -0.215 5.215 19 C 0.009 3.991 20 C -0.304 4.304 21 C 0.010 3.990 22 N -0.282 5.282 23 H 0.067 0.933 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.223 0.777 30 H 0.252 0.748 31 H 0.185 0.815 32 H 0.162 0.838 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -14.423 5.840 -6.854 17.003 hybrid contribution -0.320 0.779 -2.659 2.790 sum -14.743 6.619 -9.513 18.753 Atomic orbital electron populations 1.21871 0.97262 0.98715 1.02101 1.22258 0.93797 0.99725 1.01371 1.18965 0.95602 0.88176 0.80756 0.94018 1.21972 0.89611 1.50152 1.04924 0.91892 1.25596 0.96578 0.91618 1.02040 1.70878 1.13882 1.36389 1.30551 0.84235 0.76071 0.77718 0.76410 1.20859 1.20627 1.19816 1.45594 1.12846 1.58808 1.19080 1.16102 0.84059 0.79434 0.81929 1.91013 1.50048 1.61419 1.37408 1.42605 1.13243 1.56965 1.17614 1.19185 0.86666 0.88272 0.85388 1.68634 1.03409 1.20199 1.29278 1.23262 0.91620 0.87802 0.96423 1.22685 1.03215 1.07672 0.96781 1.22882 0.86881 0.90786 0.98461 1.67782 1.21446 1.15066 1.23896 0.93343 0.95271 0.92888 0.93201 0.91777 0.91862 0.77732 0.74835 0.81504 0.83815 0.81480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.53 37.16 0.32 -2.66 16 2 C -0.13 -2.99 5.37 -26.73 -0.14 -3.13 16 3 C 0.27 6.41 1.84 -69.08 -0.13 6.29 16 4 H 0.04 1.09 6.12 -51.93 -0.32 0.77 16 5 C -0.63 -16.83 8.92 -34.44 -0.31 -17.14 16 6 H 0.06 1.75 7.96 -52.49 -0.42 1.34 16 7 C 0.05 1.39 5.15 -17.82 -0.09 1.30 16 8 N -0.89 -25.98 13.70 55.43 0.76 -25.22 16 9 Si 1.03 24.97 26.56 -169.99 -4.51 20.46 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.27 -6.28 6.34 56.52 0.36 -5.92 16 13 N -0.71 -14.41 5.03 -59.82 -0.30 -14.71 16 14 C 0.69 13.70 7.13 -86.91 -0.62 13.08 16 15 O -0.53 -12.14 11.68 5.31 0.06 -12.08 16 16 N -0.65 -10.70 5.40 -17.49 -0.09 -10.79 16 17 C 0.56 9.22 8.38 -322.30 -2.70 6.51 16 18 N -0.50 -8.48 7.87 -13.84 -0.11 -8.58 16 19 C 0.18 2.18 11.30 -17.22 -0.19 1.98 16 20 C -0.28 -2.60 10.16 -39.31 -0.40 -3.00 16 21 C 0.18 1.80 11.30 -17.22 -0.19 1.60 16 22 N -0.56 -7.73 10.46 -13.84 -0.14 -7.87 16 23 H 0.05 1.03 5.63 -51.93 -0.29 0.73 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.05 1.16 7.89 -51.93 -0.41 0.75 16 26 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.06 1.51 5.77 -51.93 -0.30 1.21 16 28 H 0.27 7.85 8.73 -40.82 -0.36 7.50 16 29 H 0.39 6.94 8.54 -40.82 -0.35 6.60 16 30 H 0.41 5.48 8.83 -40.82 -0.36 5.12 16 31 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 279.24 15.07 4.21 4.21 Total: -1.00 -33.13 279.24 -8.35 -41.48 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -3.75 Total: 8.26 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -4.46 Total: 4.84 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: 0.11 Total: -67.18 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.06 Total: -12.08 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -4.51 Total: 20.46 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -33.13 -8.35 -41.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888692596.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.393 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds