Wall clock time and date at job start Mon Mar 30 2020 18:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.47218 * 174.28184 * 3 2 1 6 6 H 1.07994 * 120.00006 * 114.30415 * 5 3 2 7 7 C 1.37876 * 120.00141 * 294.30824 * 5 3 2 8 8 N 1.31513 * 120.00194 * 153.95095 * 7 5 3 9 9 Si 1.86802 * 120.00063 * 333.95379 * 7 5 3 10 10 H 1.48501 * 109.47226 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.46995 * 299.99962 * 9 7 5 12 12 H 1.48504 * 109.47090 * 59.99836 * 9 7 5 13 13 N 1.46495 * 109.47371 * 294.28549 * 3 2 1 14 14 C 1.34779 * 120.00104 * 84.99565 * 13 3 2 15 15 O 1.21567 * 120.00250 * 0.02562 * 14 13 3 16 16 N 1.34778 * 120.00080 * 179.97438 * 14 13 3 17 17 C 1.38886 * 119.99999 * 180.02562 * 16 14 13 18 18 N 1.32420 * 119.20945 * 359.73463 * 17 16 14 19 19 C 1.32276 * 120.75182 * 179.71831 * 18 17 16 20 20 C 1.38609 * 119.18337 * 0.54454 * 19 18 17 21 21 C 1.38607 * 118.54128 * 359.72733 * 20 19 18 22 22 N 1.32278 * 119.18604 * 0.02562 * 21 20 19 23 23 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 24 24 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 26 26 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 27 27 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 28 28 H 0.97007 * 119.99788 * 354.96411 * 8 7 5 29 29 H 0.97005 * 120.00159 * 265.00245 * 13 3 2 30 30 H 0.97003 * 119.99372 * 0.02562 * 16 14 13 31 31 H 1.07998 * 120.40846 * 180.27344 * 19 18 17 32 32 H 1.07998 * 120.72903 * 179.75354 * 20 19 18 33 33 H 1.08002 * 120.40925 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4451 0.1416 6 1 4.1585 1.8024 -0.6686 7 6 4.1237 0.9911 1.3054 8 7 5.3469 0.5087 1.2831 9 14 3.1766 1.0612 2.9140 10 1 4.0193 0.5166 4.0087 11 1 2.8200 2.4705 3.2174 12 1 1.9373 0.2517 2.7945 13 7 1.6671 2.0923 -1.2589 14 6 0.4512 2.6586 -1.3908 15 8 -0.3361 2.6306 -0.4649 16 7 0.1084 3.2569 -2.5488 17 6 -1.1444 3.8408 -2.6845 18 7 -1.9918 3.7961 -1.6679 19 6 -3.1906 4.3472 -1.7619 20 6 -3.5589 4.9663 -2.9461 21 6 -2.6494 4.9899 -3.9918 22 7 -1.4649 4.4239 -3.8294 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 5.8117 0.4042 0.4380 29 1 2.2953 2.1150 -1.9977 30 1 0.7367 3.2795 -3.2875 31 1 -3.8757 4.3112 -0.9278 32 1 -4.5329 5.4208 -3.0515 33 1 -2.9047 5.4646 -4.9277 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888692596.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:05 Heat of formation + Delta-G solvation = 14.650279 kcal Electronic energy + Delta-G solvation = -18167.921748 eV Core-core repulsion = 15228.880768 eV Total energy + Delta-G solvation = -2939.040980 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.26020 -40.83191 -37.44602 -35.87310 -34.65804 -34.46314 -33.20056 -31.51104 -29.06674 -25.70931 -25.11571 -24.19044 -22.61258 -21.42831 -20.38782 -19.61058 -18.86351 -17.62977 -17.20064 -16.87722 -16.46738 -15.79837 -15.52675 -15.34009 -15.09144 -14.49793 -14.39940 -14.26799 -14.12568 -13.61198 -12.64387 -12.53139 -12.32343 -12.11086 -11.96730 -11.85736 -11.74697 -11.52991 -11.23056 -11.06433 -10.39927 -9.95021 -9.91768 -9.55233 -8.81396 -6.39775 0.02496 0.26880 1.29087 1.48948 1.51118 1.72697 2.14133 2.43826 2.93549 2.99411 3.00977 3.30167 3.78111 3.86082 4.32512 4.33881 4.40638 4.44888 4.53668 4.81810 4.88833 5.08227 5.13914 5.20039 5.29139 5.53347 5.54480 5.58626 5.66968 5.90151 6.04044 6.19557 6.55697 6.90608 7.28402 7.34513 7.60639 8.56277 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.041250 B = 0.005415 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.623241 B = 5169.470353 C = 5384.179494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.128 4.128 3 C 0.275 3.725 4 H 0.022 0.978 5 C -0.626 4.626 6 H 0.043 0.957 7 C 0.010 3.990 8 N -0.914 5.914 9 Si 1.061 2.939 10 H -0.280 1.280 11 H -0.275 1.275 12 H -0.254 1.254 13 N -0.711 5.711 14 C 0.692 3.308 15 O -0.560 6.560 16 N -0.646 5.646 17 C 0.531 3.469 18 N -0.545 5.545 19 C 0.155 3.845 20 C -0.248 4.248 21 C 0.169 3.831 22 N -0.567 5.567 23 H 0.042 0.958 24 H 0.053 0.947 25 H 0.039 0.961 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.262 0.738 29 H 0.401 0.599 30 H 0.427 0.573 31 H 0.190 0.810 32 H 0.191 0.809 33 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.619 7.630 -10.652 21.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.040 0.960 5 C -0.664 4.664 6 H 0.062 0.938 7 C -0.193 4.193 8 N -0.548 5.548 9 Si 0.884 3.116 10 H -0.205 1.205 11 H -0.201 1.201 12 H -0.179 1.179 13 N -0.365 5.365 14 C 0.390 3.610 15 O -0.433 6.433 16 N -0.299 5.299 17 C 0.175 3.825 18 N -0.266 5.266 19 C -0.011 4.011 20 C -0.271 4.271 21 C 0.004 3.996 22 N -0.289 5.289 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.235 0.765 30 H 0.266 0.734 31 H 0.206 0.794 32 H 0.208 0.792 33 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -17.159 6.797 -8.013 20.120 hybrid contribution 0.378 0.631 -2.471 2.578 sum -16.780 7.427 -10.484 21.135 Atomic orbital electron populations 1.21711 0.95671 0.99988 1.01205 1.22144 0.95073 0.98433 1.01062 1.18639 0.93440 0.89141 0.81765 0.95989 1.22126 0.91208 1.48923 1.04136 0.93836 1.26619 0.96684 0.91201 1.04833 1.70965 1.14988 1.38737 1.30066 0.83795 0.75893 0.78289 0.73651 1.20534 1.20107 1.17858 1.45287 1.13680 1.59159 1.18384 1.16040 0.83292 0.79119 0.82509 1.90980 1.50833 1.62598 1.38911 1.42209 1.14148 1.56809 1.16758 1.19245 0.86645 0.90115 0.86515 1.68492 1.05398 1.22103 1.30591 1.23805 0.90680 0.88000 0.98616 1.23154 1.04516 1.04708 0.94758 1.23783 0.85680 0.89747 1.00426 1.67829 1.23265 1.15120 1.22677 0.93880 0.92790 0.94138 0.92770 0.92789 0.92844 0.76488 0.73431 0.79356 0.79192 0.77033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.23 8.53 71.98 0.61 -4.62 16 2 C -0.13 -5.71 5.37 30.60 0.16 -5.55 16 3 C 0.28 13.20 1.84 44.25 0.08 13.28 16 4 H 0.02 1.17 6.12 -2.39 -0.01 1.15 16 5 C -0.63 -34.02 8.92 25.60 0.23 -33.79 16 6 H 0.04 2.48 7.96 -2.91 -0.02 2.46 16 7 C 0.01 0.56 5.15 84.65 0.44 0.99 16 8 N -0.91 -54.56 13.70 21.45 0.29 -54.27 16 9 Si 1.06 50.50 26.56 68.60 1.82 52.32 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.25 -11.27 6.34 99.48 0.63 -10.63 16 13 N -0.71 -29.02 5.03 -461.43 -2.32 -31.35 16 14 C 0.69 27.74 7.13 179.05 1.28 29.02 16 15 O -0.56 -25.96 11.68 -3.93 -0.05 -26.00 16 16 N -0.65 -21.11 5.40 -327.50 -1.77 -22.88 16 17 C 0.53 17.05 8.38 261.31 2.19 19.24 16 18 N -0.55 -18.29 7.87 -197.71 -1.56 -19.84 16 19 C 0.15 3.47 11.30 84.71 0.96 4.43 16 20 C -0.25 -3.59 10.16 22.45 0.23 -3.36 16 21 C 0.17 2.80 11.30 84.71 0.96 3.75 16 22 N -0.57 -14.51 10.46 -197.70 -2.07 -16.57 16 23 H 0.04 1.79 5.63 -2.39 -0.01 1.78 16 24 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 25 H 0.04 1.73 7.89 -2.39 -0.02 1.71 16 26 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.05 2.50 5.77 -2.39 -0.01 2.49 16 28 H 0.26 15.61 8.73 -92.70 -0.81 14.80 16 29 H 0.40 14.38 8.54 -92.70 -0.79 13.59 16 30 H 0.43 11.18 8.83 -92.71 -0.82 10.36 16 31 H 0.19 3.07 8.06 -2.91 -0.02 3.05 16 32 H 0.19 0.97 8.06 -2.91 -0.02 0.95 16 33 H 0.21 1.46 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -73.28 279.24 0.92 -72.36 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -0.57 Total: 22.85 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: 7.13 Total: 23.39 kcal Atomic # 7 Polarization: -137.49 SS G_CDS: -7.42 Total: -144.91 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.05 Total: -26.00 kcal Atomic # 14 Polarization: 50.50 SS G_CDS: 1.82 Total: 52.32 kcal Total: -73.28 0.92 -72.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888692596.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.012 kcal (2) G-P(sol) polarization free energy of solvation -73.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds