Wall clock time and date at job start Mon Mar 30 2020 18:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38547 * 120.77432 * 2 1 4 4 C 1.38516 * 119.13869 * 179.97438 * 3 2 1 5 5 F 1.35102 * 119.65033 * 179.97438 * 4 3 2 6 6 N 1.32056 * 120.70277 * 359.71629 * 4 3 2 7 7 C 1.31910 * 121.68468 * 0.57103 * 6 4 3 8 8 C 1.38142 * 120.79735 * 359.43422 * 7 6 4 9 9 C 1.50698 * 120.39154 * 180.29768 * 8 7 6 10 10 N 1.46502 * 109.47402 * 99.55831 * 9 8 7 11 11 C 1.36941 * 119.99861 * 89.80273 * 10 9 8 12 12 H 1.08001 * 120.00017 * 30.52215 * 11 10 9 13 13 C 1.38807 * 120.00147 * 210.52066 * 11 10 9 14 14 N 1.31617 * 120.00398 * 21.37706 * 13 11 10 15 15 Si 1.86801 * 120.00016 * 201.38197 * 13 11 10 16 16 H 1.48501 * 109.47353 * 59.99490 * 15 13 11 17 17 H 1.48502 * 109.47288 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47011 * 299.99672 * 15 13 11 19 19 C 1.46500 * 120.00383 * 269.81020 * 10 9 8 20 20 C 1.52997 * 117.49618 * 2.89212 * 19 10 9 21 21 C 1.52999 * 117.49660 * 294.26992 * 19 10 9 22 22 H 1.09002 * 109.47198 * 270.69089 * 1 2 3 23 23 H 1.08999 * 109.46699 * 30.68739 * 1 2 3 24 24 H 1.08997 * 109.47403 * 150.68516 * 1 2 3 25 25 H 1.08002 * 120.42929 * 359.95321 * 3 2 1 26 26 H 1.08002 * 119.59923 * 179.70595 * 7 6 4 27 27 H 1.09005 * 109.47338 * 219.56226 * 9 8 7 28 28 H 1.09003 * 109.46993 * 339.56095 * 9 8 7 29 29 H 0.96994 * 120.00592 * 184.95919 * 14 13 11 30 30 H 1.08994 * 115.55285 * 148.59884 * 19 10 9 31 31 H 1.09002 * 117.49924 * 359.97438 * 20 19 10 32 32 H 1.08993 * 117.50126 * 145.02403 * 20 19 10 33 33 H 1.08999 * 117.50158 * 214.97920 * 21 19 10 34 34 H 1.09003 * 117.49626 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1904 0.0000 4 6 3.6005 1.1508 0.0005 5 9 4.3021 2.3054 0.0000 6 7 4.2421 -0.0034 0.0067 7 6 3.5976 -1.1543 0.0013 8 6 2.2167 -1.1917 0.0007 9 6 1.4898 -2.5118 0.0012 10 7 1.0527 -2.8280 1.3633 11 6 -0.1743 -2.4084 1.8034 12 1 -0.9917 -2.3038 1.1052 13 6 -0.3676 -2.1174 3.1468 14 7 0.6635 -1.8320 3.9133 15 14 -2.0912 -2.1309 3.8668 16 1 -2.6854 -3.4820 3.7032 17 1 -2.0273 -1.7891 5.3105 18 1 -2.9312 -1.1317 3.1589 19 6 1.9282 -3.5931 2.2546 20 6 3.3130 -3.9745 1.7279 21 6 2.2290 -5.0443 1.8746 22 1 -0.3634 0.0124 1.0276 23 1 -0.3633 0.8838 -0.5245 24 1 -0.3634 -0.8960 -0.5031 25 1 1.6957 2.1368 -0.0008 26 1 4.1564 -2.0786 0.0018 27 1 0.6208 -2.4484 -0.6538 28 1 2.1583 -3.2948 -0.3568 29 1 0.5378 -1.6994 4.8659 30 1 1.8398 -3.3586 3.3154 31 1 3.5726 -3.6566 0.7181 32 1 4.1362 -3.9910 2.4422 33 1 2.3390 -5.7644 2.6853 34 1 1.7752 -5.4298 0.9616 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891795489.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:07 Heat of formation + Delta-G solvation = 26.620612 kcal Electronic energy + Delta-G solvation = -18662.000001 eV Core-core repulsion = 15703.558132 eV Total energy + Delta-G solvation = -2958.441869 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.118 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.97428 -41.20697 -38.73385 -35.60853 -34.55025 -33.44691 -31.39791 -29.06289 -27.20794 -25.41251 -24.05518 -22.92439 -22.58087 -21.07416 -19.01261 -18.43139 -18.17244 -17.04971 -16.94170 -16.38860 -16.06141 -15.67352 -15.30514 -14.98865 -14.70042 -14.35196 -13.75891 -13.59710 -13.45159 -13.36946 -12.87016 -12.74037 -12.62059 -12.48200 -12.23882 -12.07578 -11.81096 -11.17541 -10.97580 -10.60368 -10.41898 -10.32233 -9.72515 -8.56983 -7.74401 -5.34053 0.04099 0.26827 1.50196 1.55507 1.59098 2.50559 2.63821 2.73680 3.26421 3.44404 3.56252 3.65009 3.91255 4.00692 4.10474 4.39293 4.46714 4.54847 4.57796 4.67536 4.77709 4.79281 4.90907 4.94821 5.03221 5.10762 5.20647 5.39709 5.45356 5.59382 5.70948 5.81681 5.89090 6.40983 6.72324 7.17611 7.85321 8.33873 9.18214 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.020192 B = 0.008907 C = 0.007177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.322960 B = 3142.815153 C = 3900.543831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.001 4.001 3 C -0.197 4.197 4 C 0.268 3.732 5 F -0.125 7.125 6 N -0.543 5.543 7 C 0.127 3.873 8 C -0.147 4.147 9 C 0.177 3.823 10 N -0.554 5.554 11 C -0.242 4.242 12 H 0.081 0.919 13 C -0.037 4.037 14 N -0.917 5.917 15 Si 0.946 3.054 16 H -0.283 1.283 17 H -0.305 1.305 18 H -0.270 1.270 19 C 0.118 3.882 20 C -0.203 4.203 21 C -0.214 4.214 22 H 0.071 0.929 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.162 0.838 26 H 0.173 0.827 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.246 0.754 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.674 0.383 -8.405 8.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.010 4.010 3 C -0.218 4.218 4 C 0.114 3.886 5 F -0.105 7.105 6 N -0.258 5.258 7 C -0.030 4.030 8 C -0.152 4.152 9 C 0.051 3.949 10 N -0.270 5.270 11 C -0.372 4.372 12 H 0.098 0.902 13 C -0.234 4.234 14 N -0.561 5.561 15 Si 0.776 3.224 16 H -0.209 1.209 17 H -0.232 1.232 18 H -0.196 1.196 19 C 0.010 3.990 20 C -0.241 4.241 21 C -0.254 4.254 22 H 0.090 0.910 23 H 0.102 0.898 24 H 0.098 0.902 25 H 0.179 0.821 26 H 0.190 0.810 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.122 0.878 31 H 0.117 0.883 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.540 0.557 -8.255 8.416 hybrid contribution -1.110 0.365 1.061 1.578 sum 0.430 0.922 -7.194 7.266 Atomic orbital electron populations 1.20874 0.88412 1.03418 1.03196 1.20322 0.98218 0.91253 0.91162 1.21830 0.92046 1.01248 1.06667 1.18241 0.87444 0.81593 1.01277 1.91543 1.80214 1.44858 1.93854 1.66875 1.43155 0.98539 1.17278 1.22571 0.91718 0.94042 0.94635 1.22016 0.94972 0.99080 0.99174 1.20105 0.97304 0.89765 0.87706 1.43715 1.15613 1.57838 1.09848 1.19374 0.87107 1.37738 0.92969 0.90169 1.25592 0.99163 0.99709 0.98959 1.70148 1.31151 1.50005 1.04827 0.85668 0.81876 0.78130 0.76756 1.20899 1.23212 1.19559 1.21477 0.90628 0.90374 0.96569 1.23304 0.93099 1.05409 1.02295 1.23383 1.04541 0.94415 1.03030 0.91036 0.89835 0.90163 0.82061 0.80984 0.90638 0.90849 0.94437 0.87762 0.88314 0.89653 0.89782 0.89333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.23 8.29 71.24 0.59 -2.64 16 2 C 0.00 -0.04 5.92 -19.68 -0.12 -0.16 16 3 C -0.20 -6.59 9.79 22.41 0.22 -6.37 16 4 C 0.27 9.84 8.41 84.73 0.71 10.55 16 5 F -0.13 -4.41 17.29 44.97 0.78 -3.63 16 6 N -0.54 -20.81 10.37 -196.92 -2.04 -22.86 16 7 C 0.13 4.49 10.46 84.66 0.89 5.38 16 8 C -0.15 -5.27 5.48 -19.78 -0.11 -5.38 16 9 C 0.18 6.18 4.88 85.63 0.42 6.59 16 10 N -0.55 -23.82 2.79 -682.34 -1.90 -25.73 16 11 C -0.24 -11.32 7.07 84.03 0.59 -10.72 16 12 H 0.08 3.56 7.26 -2.91 -0.02 3.54 16 13 C -0.04 -1.88 5.07 84.86 0.43 -1.45 16 14 N -0.92 -50.20 11.05 21.65 0.24 -49.96 16 15 Si 0.95 41.29 29.61 68.60 2.03 43.32 16 16 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.31 -13.94 7.11 99.48 0.71 -13.24 16 18 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 19 C 0.12 5.13 5.87 44.99 0.26 5.39 16 20 C -0.20 -7.12 9.53 30.59 0.29 -6.83 16 21 C -0.21 -7.61 10.34 30.59 0.32 -7.30 16 22 H 0.07 2.72 7.11 -2.39 -0.02 2.70 16 23 H 0.08 2.06 8.11 -2.39 -0.02 2.04 16 24 H 0.08 2.41 5.64 -2.39 -0.01 2.40 16 25 H 0.16 4.43 8.06 -2.91 -0.02 4.40 16 26 H 0.17 5.31 6.09 -2.91 -0.02 5.29 16 27 H 0.08 2.44 6.40 -2.38 -0.02 2.42 16 28 H 0.07 2.27 6.06 -2.39 -0.01 2.25 16 29 H 0.25 13.43 8.32 -92.71 -0.77 12.66 16 30 H 0.11 5.43 5.61 -2.39 -0.01 5.42 16 31 H 0.10 3.09 4.05 -2.39 -0.01 3.08 16 32 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -56.88 280.67 4.73 -52.15 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 1.13 Total: 19.64 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 4.50 Total: -12.94 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -3.71 Total: -98.54 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.78 Total: -3.63 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -56.88 4.73 -52.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891795489.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.774 kcal (2) G-P(sol) polarization free energy of solvation -56.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds