Wall clock time and date at job start Mon Mar 30 2020 18:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46495 * 109.47313 * 2 1 4 4 C 1.34843 * 126.59599 * 124.99591 * 3 2 1 5 5 C 1.36663 * 106.82930 * 179.97438 * 4 3 2 6 6 C 1.47433 * 125.77935 * 179.97438 * 5 4 3 7 7 O 1.21628 * 120.00257 * 4.16610 * 6 5 4 8 8 N 1.34777 * 120.00211 * 184.16194 * 6 5 4 9 9 C 1.36952 * 120.00306 * 185.36463 * 8 6 5 10 10 H 1.08000 * 120.00587 * 225.13697 * 9 8 6 11 11 C 1.38990 * 119.99946 * 45.13240 * 9 8 6 12 12 N 1.31402 * 120.00179 * 6.62991 * 11 9 8 13 13 Si 1.86799 * 120.00108 * 186.62082 * 11 9 8 14 14 H 1.48498 * 109.47201 * 180.02562 * 13 11 9 15 15 H 1.48500 * 109.47351 * 300.00370 * 13 11 9 16 16 H 1.48497 * 109.47187 * 60.00364 * 13 11 9 17 17 C 1.46501 * 119.99686 * 5.36571 * 8 6 5 18 18 C 1.53007 * 117.49835 * 182.21449 * 17 8 6 19 19 C 1.53009 * 117.49776 * 113.56030 * 17 8 6 20 20 N 1.34428 * 108.44287 * 0.24753 * 5 4 3 21 21 N 1.28758 * 109.52458 * 359.58052 * 20 5 4 22 22 H 1.08998 * 109.47749 * 59.99944 * 1 2 3 23 23 H 1.09010 * 109.47073 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47337 * 299.99616 * 1 2 3 25 25 H 1.09001 * 109.47170 * 239.99681 * 2 1 3 26 26 H 1.09008 * 109.47281 * 120.00204 * 2 1 3 27 27 H 1.07998 * 126.58319 * 359.97438 * 4 3 2 28 28 H 0.96997 * 120.00471 * 174.99715 * 12 11 9 29 29 H 1.08995 * 115.55257 * 327.88874 * 17 8 6 30 30 H 1.08998 * 117.49461 * 0.02562 * 18 17 8 31 31 H 1.08994 * 117.49753 * 145.01697 * 18 17 8 32 32 H 1.08994 * 117.49431 * 214.97650 * 19 17 8 33 33 H 1.09002 * 117.49826 * 359.97344 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8717 1.9321 0.8869 5 6 3.0509 3.2328 0.5079 6 6 3.9070 4.2196 1.1914 7 8 4.5889 3.8800 2.1395 8 7 3.9340 5.4980 0.7655 9 6 4.8091 6.3888 1.3279 10 1 4.4706 7.3758 1.6065 11 6 6.1330 6.0227 1.5401 12 7 6.5779 4.8732 1.0846 13 14 7.2800 7.1647 2.4726 14 1 8.6276 6.5475 2.5625 15 1 7.3769 8.4619 1.7564 16 1 6.7473 7.3928 3.8399 17 6 3.0271 5.9348 -0.2989 18 6 3.1418 7.3847 -0.7741 19 6 1.9414 6.9481 0.0695 20 7 2.3099 3.4619 -0.5901 21 7 1.6887 2.3842 -0.9225 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0278 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.3261 1.4399 1.7339 28 1 7.5179 4.6493 1.1685 29 1 2.7783 5.1792 -1.0440 30 1 3.8923 8.0133 -0.2950 31 1 2.9682 7.5828 -1.8317 32 1 0.9786 6.8592 -0.4336 33 1 1.9017 7.2894 1.1039 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930615389.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:25 Heat of formation + Delta-G solvation = 114.714997 kcal Electronic energy + Delta-G solvation = -18478.710464 eV Core-core repulsion = 15544.008616 eV Total energy + Delta-G solvation = -2934.701848 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.52746 -38.17999 -35.81426 -35.09502 -32.76169 -30.96531 -30.79500 -29.54924 -25.34322 -24.29291 -22.55948 -21.45977 -21.38003 -20.54221 -19.42394 -17.37838 -15.96968 -15.83183 -15.62596 -14.77831 -14.58211 -14.15152 -13.88986 -13.54355 -13.25887 -12.78484 -12.50392 -12.39811 -12.04441 -11.75720 -11.31719 -11.02905 -10.93983 -10.75130 -10.57747 -10.49942 -10.11690 -9.89268 -9.73773 -9.21459 -8.69639 -8.47403 -8.12729 -6.90882 -6.04400 -3.84194 1.72297 2.47900 2.67750 3.34172 3.38562 3.40044 4.27047 4.42871 4.64205 4.75048 4.90218 4.92393 5.00580 5.07187 5.36282 5.40238 5.46722 5.58085 5.71503 5.83001 5.96885 5.99316 6.05310 6.29245 6.44552 6.47845 6.73064 6.87762 7.06997 7.31007 7.64102 8.31674 8.59215 9.11410 9.22888 9.68811 10.36590 11.03064 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.028779 B = 0.007125 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.699163 B = 3928.660739 C = 4668.128333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.122 3.878 3 N -0.370 5.370 4 C 0.061 3.939 5 C -0.052 4.052 6 C 0.554 3.446 7 O -0.529 6.529 8 N -0.413 5.413 9 C -0.331 4.331 10 H 0.080 0.920 11 C 0.060 3.940 12 N -0.831 5.831 13 Si 0.918 3.082 14 H -0.286 1.286 15 H -0.276 1.276 16 H -0.274 1.274 17 C 0.069 3.931 18 C -0.181 4.181 19 C -0.207 4.207 20 N -0.214 5.214 21 N -0.092 5.092 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.062 0.938 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.196 0.804 28 H 0.264 0.736 29 H 0.144 0.856 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.283 -7.838 -2.432 12.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.001 3.999 3 N -0.158 5.158 4 C -0.094 4.094 5 C -0.192 4.192 6 C 0.340 3.660 7 O -0.406 6.406 8 N -0.132 5.132 9 C -0.459 4.459 10 H 0.097 0.903 11 C -0.150 4.150 12 N -0.465 5.465 13 Si 0.745 3.255 14 H -0.211 1.211 15 H -0.202 1.202 16 H -0.200 1.200 17 C -0.037 4.037 18 C -0.219 4.219 19 C -0.246 4.246 20 N -0.087 5.087 21 N -0.071 5.071 22 H 0.091 0.909 23 H 0.095 0.905 24 H 0.081 0.919 25 H 0.109 0.891 26 H 0.117 0.883 27 H 0.212 0.788 28 H 0.074 0.926 29 H 0.161 0.839 30 H 0.121 0.879 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.571 -7.884 -3.128 12.789 hybrid contribution 1.169 0.097 1.194 1.674 sum -8.402 -7.786 -1.934 11.617 Atomic orbital electron populations 1.22065 0.93360 1.03011 1.03900 1.21831 0.96320 0.77369 1.04421 1.50395 1.32889 1.11698 1.20845 1.23255 0.94646 0.94674 0.96775 1.22376 1.04544 0.95358 0.96936 1.16424 0.83121 0.82034 0.84443 1.90617 1.43114 1.78205 1.28635 1.42516 1.32353 1.08014 1.30336 1.18933 0.89353 0.96408 1.41204 0.90270 1.25363 0.97512 0.95727 0.96433 1.69860 1.14690 1.20557 1.41393 0.86180 0.79260 0.79729 0.80324 1.21111 1.20193 1.19959 1.22553 0.94343 0.92297 0.94508 1.23085 1.00671 0.99597 0.98559 1.23221 0.93464 1.07555 1.00339 1.74530 1.05957 1.16797 1.11391 1.81790 1.21757 0.90884 1.12621 0.90881 0.90479 0.91851 0.89057 0.88273 0.78762 0.92556 0.83893 0.87890 0.89914 0.89943 0.89641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.12 37.15 0.38 -0.99 16 2 C 0.12 1.16 7.26 -4.05 -0.03 1.13 16 3 N -0.37 -5.68 3.69 -61.04 -0.23 -5.91 16 4 C 0.06 1.10 11.28 -16.80 -0.19 0.91 16 5 C -0.05 -1.18 6.75 -83.56 -0.56 -1.75 16 6 C 0.55 15.05 6.76 -12.52 -0.08 14.97 16 7 O -0.53 -15.87 14.58 5.25 0.08 -15.79 16 8 N -0.41 -11.13 2.85 -108.92 -0.31 -11.44 16 9 C -0.33 -9.33 7.93 -14.99 -0.12 -9.45 16 10 H 0.08 2.14 7.20 -52.49 -0.38 1.76 16 11 C 0.06 1.70 4.75 -17.46 -0.08 1.61 16 12 N -0.83 -25.02 11.15 55.50 0.62 -24.40 16 13 Si 0.92 21.88 29.56 -169.99 -5.03 16.85 16 14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 17 C 0.07 1.59 5.61 -67.92 -0.38 1.21 16 18 C -0.18 -3.66 9.80 -26.69 -0.26 -3.92 16 19 C -0.21 -4.08 10.38 -26.69 -0.28 -4.36 16 20 N -0.21 -4.57 8.70 32.84 0.29 -4.28 16 21 N -0.09 -1.69 13.64 60.35 0.82 -0.87 16 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.08 0.43 8.14 -51.92 -0.42 0.00 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.10 0.68 8.08 -51.92 -0.42 0.26 16 27 H 0.20 2.99 8.06 -52.49 -0.42 2.56 16 28 H 0.26 7.57 8.32 -40.82 -0.34 7.23 16 29 H 0.14 3.26 5.02 -51.93 -0.26 3.00 16 30 H 0.10 2.20 6.71 -51.93 -0.35 1.85 16 31 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 LS Contribution 286.53 15.07 4.32 4.32 Total: -1.00 -34.77 286.53 -4.98 -39.74 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -3.92 Total: 2.41 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -1.61 Total: -0.64 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 1.19 Total: -46.89 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.08 Total: -15.79 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -34.77 -4.98 -39.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930615389.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.460 kcal (2) G-P(sol) polarization free energy of solvation -34.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds