Wall clock time and date at job start Mon Mar 30 2020 18:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30864 * 125.41599 * 2 1 4 4 C 1.33317 * 109.68195 * 179.97438 * 3 2 1 5 5 C 1.36663 * 107.78701 * 0.02562 * 4 3 2 6 6 C 1.46771 * 126.84585 * 179.97438 * 5 4 3 7 7 O 1.21683 * 119.99933 * 0.02562 * 6 5 4 8 8 N 1.34767 * 120.00177 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00310 * 179.97438 * 8 6 5 10 10 C 1.53948 * 113.73986 * 253.74600 * 9 8 6 11 11 N 1.47819 * 86.03297 * 222.07887 * 10 9 8 12 12 C 1.36932 * 134.45433 * 204.64136 * 11 10 9 13 13 H 1.08005 * 119.99782 * 179.87068 * 12 11 10 14 14 C 1.38813 * 120.00409 * 359.86880 * 12 11 10 15 15 N 1.31614 * 119.99557 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99946 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47360 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47351 * 120.00483 * 16 14 12 19 19 H 1.48504 * 109.47012 * 239.99983 * 16 14 12 20 20 C 1.47582 * 91.05229 * 24.55078 * 11 10 9 21 21 N 1.34490 * 125.42009 * 179.97438 * 2 1 3 22 22 H 0.97005 * 126.46844 * 0.02562 * 21 2 1 23 23 H 1.09003 * 109.47030 * 90.02349 * 1 2 3 24 24 H 1.08995 * 109.47297 * 210.02555 * 1 2 3 25 25 H 1.09010 * 109.46957 * 330.02464 * 1 2 3 26 26 H 1.08003 * 126.10976 * 179.97438 * 4 3 2 27 27 H 0.96999 * 120.00275 * 0.02562 * 8 6 5 28 28 H 1.09001 * 112.94320 * 25.33219 * 9 8 6 29 29 H 1.08993 * 113.77172 * 336.33898 * 10 9 8 30 30 H 1.08999 * 113.77411 * 107.74545 * 10 9 8 31 31 H 0.97002 * 119.99595 * 179.97438 * 15 14 12 32 32 H 1.09001 * 113.76948 * 221.15375 * 20 11 10 33 33 H 1.09000 * 113.77209 * 89.75010 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0665 0.0000 4 6 3.5486 0.7050 0.0006 5 6 3.5975 -0.6608 0.0004 6 6 4.8029 -1.4983 0.0003 7 8 5.9038 -0.9800 0.0009 8 7 4.6903 -2.8412 -0.0005 9 6 5.8934 -3.6772 -0.0011 10 6 6.1771 -4.3540 -1.3544 11 7 6.5101 -5.5590 -0.5657 12 6 7.2927 -6.6614 -0.7830 13 1 7.3737 -7.4245 -0.0230 14 6 7.9819 -6.7983 -1.9802 15 7 7.8836 -5.8682 -2.9061 16 14 9.0500 -8.3019 -2.2762 17 1 8.9931 -9.1912 -1.0884 18 1 8.5534 -9.0349 -3.4684 19 1 10.4534 -7.8744 -2.5072 20 6 5.6627 -5.0959 0.5504 21 7 2.2865 -1.0960 0.0005 22 1 1.9849 -2.0180 0.0006 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3633 0.8903 0.5135 26 1 4.3978 1.3722 0.0003 27 1 3.8127 -3.2544 -0.0013 28 1 6.7601 -3.1749 0.4285 29 1 5.2932 -4.4700 -1.9815 30 1 7.0265 -3.9288 -1.8889 31 1 8.3655 -5.9636 -3.7425 32 1 6.1023 -5.2617 1.5339 33 1 4.6274 -5.4301 0.4840 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030160671.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:32 Heat of formation + Delta-G solvation = 75.650166 kcal Electronic energy + Delta-G solvation = -17565.330551 eV Core-core repulsion = 14628.934725 eV Total energy + Delta-G solvation = -2936.395826 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.31938 -39.36712 -37.50781 -33.86404 -32.73628 -32.14299 -31.64533 -28.02286 -27.12126 -24.92463 -23.87821 -22.32747 -21.03278 -20.35971 -19.73766 -18.40283 -16.86764 -16.03399 -15.85103 -15.77097 -14.99627 -14.34948 -14.24108 -13.97473 -13.82328 -13.46741 -12.97728 -12.76018 -12.69994 -12.02320 -11.55495 -11.53740 -10.94667 -10.86083 -10.53419 -10.48412 -10.32080 -10.10561 -9.79358 -9.60764 -8.87900 -8.75202 -8.45864 -6.99572 -5.83438 -3.18067 1.24852 2.68683 2.71835 3.29553 3.36649 3.41541 3.43692 3.44541 4.14741 4.40335 4.66807 4.88404 5.05156 5.13490 5.16416 5.37703 5.41554 5.47548 5.56367 5.68173 5.91688 6.09867 6.28596 6.44107 6.45491 6.60019 7.01093 7.15854 7.25480 7.47826 7.63753 7.81755 7.89834 8.33319 8.96397 9.62874 10.47935 11.33286 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.050083 B = 0.004075 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.936933 B = 6869.080213 C = 7022.471434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.231 3.769 3 N -0.497 5.497 4 C 0.065 3.935 5 C -0.081 4.081 6 C 0.590 3.410 7 O -0.525 6.525 8 N -0.713 5.713 9 C 0.092 3.908 10 C 0.154 3.846 11 N -0.606 5.606 12 C -0.228 4.228 13 H 0.083 0.917 14 C -0.005 4.005 15 N -0.918 5.918 16 Si 0.915 3.085 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.288 1.288 20 C 0.113 3.887 21 N -0.551 5.551 22 H 0.421 0.579 23 H 0.085 0.915 24 H 0.076 0.924 25 H 0.094 0.906 26 H 0.184 0.816 27 H 0.389 0.611 28 H 0.114 0.886 29 H 0.028 0.972 30 H 0.079 0.921 31 H 0.255 0.745 32 H 0.051 0.949 33 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.247 8.498 6.309 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.033 4.033 3 N -0.217 5.217 4 C -0.088 4.088 5 C -0.197 4.197 6 C 0.376 3.624 7 O -0.401 6.401 8 N -0.363 5.363 9 C -0.013 4.013 10 C 0.028 3.972 11 N -0.333 5.333 12 C -0.355 4.355 13 H 0.101 0.899 14 C -0.202 4.202 15 N -0.564 5.564 16 Si 0.745 3.255 17 H -0.204 1.204 18 H -0.217 1.217 19 H -0.215 1.215 20 C -0.014 4.014 21 N -0.157 5.157 22 H 0.260 0.740 23 H 0.104 0.896 24 H 0.095 0.905 25 H 0.112 0.888 26 H 0.201 0.799 27 H 0.222 0.778 28 H 0.132 0.868 29 H 0.046 0.954 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -14.434 9.446 6.129 18.307 hybrid contribution 0.193 -2.420 -0.364 2.455 sum -14.241 7.026 5.764 16.894 Atomic orbital electron populations 1.20287 0.84364 1.04426 1.04018 1.23431 0.95833 0.81659 1.02386 1.70183 1.02224 1.28239 1.21089 1.22652 0.94640 0.91385 1.00126 1.21392 0.83744 0.96185 1.18397 1.16882 0.86793 0.81863 0.76887 1.90861 1.25752 1.73177 1.50286 1.46070 1.10322 1.05479 1.74448 1.24013 0.86909 0.89056 1.01277 1.22722 0.98511 0.84624 0.91379 1.45714 1.50648 1.22312 1.14580 1.19030 1.19329 0.96653 1.00530 0.89931 1.24831 1.00493 0.98681 0.96222 1.69836 1.45482 1.33833 1.07237 0.86008 0.80017 0.81733 0.77738 1.20375 1.21670 1.21522 1.22864 0.94734 0.90073 0.93730 1.43249 1.06202 1.10195 1.56070 0.74033 0.89646 0.90467 0.88762 0.79878 0.77782 0.86765 0.95433 0.90282 0.93493 0.93060 0.94904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.51 36.01 0.38 -0.02 16 2 C 0.23 2.32 8.12 -155.61 -1.26 1.05 16 3 N -0.50 -6.51 11.20 -10.58 -0.12 -6.63 16 4 C 0.07 0.90 11.66 -17.48 -0.20 0.69 16 5 C -0.08 -1.09 7.08 -82.14 -0.58 -1.67 16 6 C 0.59 9.53 7.79 -12.82 -0.10 9.43 16 7 O -0.53 -10.51 16.53 5.20 0.09 -10.43 16 8 N -0.71 -10.68 5.37 -56.62 -0.30 -10.99 16 9 C 0.09 1.75 4.40 -70.14 -0.31 1.44 16 10 C 0.15 3.63 7.33 -2.83 -0.02 3.61 16 11 N -0.61 -15.31 3.70 -177.87 -0.66 -15.97 16 12 C -0.23 -6.34 10.70 -15.06 -0.16 -6.50 16 13 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 14 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 15 N -0.92 -27.28 11.39 55.49 0.63 -26.65 16 16 Si 0.92 21.97 29.55 -169.99 -5.02 16.95 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 C 0.11 2.19 8.69 -2.96 -0.03 2.16 16 21 N -0.55 -5.36 6.07 -7.02 -0.04 -5.40 16 22 H 0.42 2.71 8.32 -40.82 -0.34 2.37 16 23 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 26 H 0.18 2.35 8.06 -52.48 -0.42 1.92 16 27 H 0.39 4.50 7.96 -40.82 -0.32 4.18 16 28 H 0.11 2.37 7.50 -51.93 -0.39 1.98 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 2.14 7.16 -51.93 -0.37 1.76 16 31 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.03 0.58 8.11 -51.93 -0.42 0.15 16 LS Contribution 290.86 15.07 4.38 4.38 Total: -1.00 -34.84 290.86 -7.36 -42.19 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -3.93 Total: 2.56 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: -2.38 Total: 9.97 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: -0.49 Total: -65.63 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -34.84 -7.36 -42.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030160671.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.843 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds