Wall clock time and date at job start Mon Mar 30 2020 18:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 119.99642 * 2 1 4 4 H 1.48505 * 109.47157 * 269.99775 * 3 2 1 5 5 H 1.48496 * 109.47225 * 30.00050 * 3 2 1 6 6 H 1.48502 * 109.47022 * 150.00173 * 3 2 1 7 7 C 1.37875 * 120.00392 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00038 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00221 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.47060 * 60.00267 * 9 7 2 11 11 O 1.45200 * 109.47232 * 180.02562 * 9 7 2 12 12 C 1.34232 * 117.00067 * 210.00033 * 11 9 7 13 13 O 1.20827 * 119.99576 * 359.97438 * 12 11 9 14 14 C 1.50692 * 120.00115 * 180.02562 * 12 11 9 15 15 C 1.53897 * 113.58861 * 279.21517 * 14 12 11 16 16 C 1.53421 * 86.82627 * 220.45408 * 15 14 12 17 17 C 1.52455 * 128.60824 * 165.09549 * 16 15 14 18 18 C 1.52460 * 128.52358 * 245.01603 * 16 15 14 19 19 C 1.53262 * 87.71856 * 25.01788 * 16 15 14 20 20 C 1.52997 * 109.47212 * 300.00211 * 9 7 2 21 21 C 1.52999 * 117.50101 * 248.74929 * 20 9 7 22 22 C 1.52996 * 117.50050 * 180.08788 * 20 9 7 23 23 H 0.96997 * 120.00462 * 0.02562 * 1 2 3 24 24 H 1.08997 * 112.83400 * 50.33221 * 14 12 11 25 25 H 1.08997 * 113.64352 * 334.92802 * 15 14 12 26 26 H 1.09000 * 113.64358 * 105.92796 * 15 14 12 27 27 H 1.08995 * 117.51451 * 224.96536 * 17 16 15 28 28 H 1.09007 * 117.50945 * 10.06627 * 17 16 15 29 29 H 1.09006 * 117.50609 * 349.80299 * 18 16 15 30 30 H 1.08994 * 117.51931 * 134.86421 * 18 16 15 31 31 H 1.09003 * 113.64565 * 220.48534 * 19 16 15 32 32 H 1.09000 * 113.72729 * 89.49431 * 19 16 15 33 33 H 1.09002 * 115.54867 * 34.41541 * 20 9 7 34 34 H 1.08998 * 117.49862 * 359.97438 * 21 20 9 35 35 H 1.09000 * 117.50295 * 145.02180 * 21 20 9 36 36 H 1.09005 * 117.49713 * 214.98330 * 22 20 9 37 37 H 1.08996 * 117.49883 * 359.97027 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 1 3.8745 -0.6799 0.8912 11 8 3.9956 -2.5629 0.0010 12 6 5.1751 -2.7923 0.5994 13 8 5.7830 -1.8793 1.1061 14 6 5.7414 -4.1882 0.6383 15 6 5.1359 -5.0678 1.7464 16 6 6.5551 -5.6020 1.9798 17 6 7.0907 -6.3918 3.1688 18 6 7.0834 -7.0168 1.7710 19 6 7.0805 -4.2887 1.3898 20 6 4.0220 -0.4729 -1.2480 21 6 4.7217 -1.3174 -2.3149 22 6 5.5371 -0.3679 -1.4336 23 1 -0.4851 0.8400 -0.0004 24 1 5.7537 -4.6670 -0.3408 25 1 4.7389 -4.4996 2.5876 26 1 4.4400 -5.8204 1.3759 27 1 8.0539 -6.0906 3.5806 28 1 6.3662 -6.7666 3.8918 29 1 6.3540 -7.8027 1.5746 30 1 8.0414 -7.1268 1.2629 31 1 7.9414 -4.4177 0.7338 32 1 7.2263 -3.5025 2.1305 33 1 3.4140 0.3652 -1.5886 34 1 4.8188 -2.3866 -2.1266 35 1 4.5744 -1.0347 -3.3572 36 1 5.9257 0.5393 -1.8964 37 1 6.1701 -0.8120 -0.6655 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123465646.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:13 Heat of formation + Delta-G solvation = -9.786244 kcal Electronic energy + Delta-G solvation = -18652.221746 eV Core-core repulsion = 15783.368712 eV Total energy + Delta-G solvation = -2868.853035 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.47932 -38.96575 -36.69538 -34.95062 -33.64749 -32.74159 -28.81931 -25.81709 -25.16832 -22.75162 -22.56949 -21.76951 -20.65584 -19.26934 -18.41171 -17.30240 -16.61052 -16.12675 -15.80517 -15.37467 -15.19085 -14.75327 -13.79909 -13.26550 -13.04239 -12.68776 -12.48862 -12.20655 -11.96678 -11.63068 -11.62391 -11.51200 -11.34930 -10.94828 -10.75347 -10.43899 -10.35917 -10.20568 -9.96015 -9.81998 -9.67076 -9.58987 -9.27870 -8.80508 -8.67689 -6.23133 -4.25288 2.79099 3.17725 3.30131 3.37248 3.40143 3.72803 4.23826 4.27095 4.48802 4.54113 4.66434 4.74978 4.83899 5.05364 5.33264 5.48424 5.50104 5.56469 5.58010 5.68379 5.70006 5.71602 5.74233 5.79705 5.94657 5.99184 6.14891 6.19927 6.28393 6.32287 6.50092 6.73453 6.79034 6.86018 7.34193 7.51673 8.23521 8.60774 8.84569 9.34087 10.88639 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.032621 B = 0.005903 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.127701 B = 4741.997568 C = 5107.252825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.081 3.919 3 Si 0.872 3.128 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.256 1.256 7 C -0.519 4.519 8 H 0.088 0.912 9 C 0.224 3.776 10 H 0.051 0.949 11 O -0.336 6.336 12 C 0.461 3.539 13 O -0.518 6.518 14 C -0.106 4.106 15 C -0.079 4.079 16 C -0.163 4.163 17 C -0.165 4.165 18 C -0.151 4.151 19 C -0.078 4.078 20 C -0.164 4.164 21 C -0.170 4.170 22 C -0.207 4.207 23 H 0.269 0.731 24 H 0.120 0.880 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.419 -10.033 1.465 16.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.122 4.122 3 Si 0.700 3.300 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.181 1.181 7 C -0.557 4.557 8 H 0.106 0.894 9 C 0.170 3.830 10 H 0.069 0.931 11 O -0.251 6.251 12 C 0.304 3.696 13 O -0.408 6.408 14 C -0.125 4.125 15 C -0.116 4.116 16 C -0.163 4.163 17 C -0.202 4.202 18 C -0.188 4.188 19 C -0.115 4.115 20 C -0.182 4.182 21 C -0.207 4.207 22 C -0.244 4.244 23 H 0.079 0.921 24 H 0.138 0.862 25 H 0.110 0.890 26 H 0.099 0.901 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.370 -9.613 1.601 16.544 hybrid contribution 0.302 1.152 -0.221 1.211 sum 13.672 -8.461 1.381 16.137 Atomic orbital electron populations 1.69834 1.06016 1.27410 1.49162 1.24711 0.94772 0.98583 0.94159 0.87066 0.80795 0.83615 0.78523 1.20030 1.21486 1.18051 1.20720 0.86794 0.95669 1.52470 0.89413 1.20456 0.94903 0.74834 0.92827 0.93126 1.86535 1.34216 1.35588 1.68782 1.23318 0.80351 0.91004 0.74892 1.90561 1.60278 1.45950 1.44020 1.22305 0.97783 0.91129 1.01292 1.22424 0.94266 0.97690 0.97249 1.22182 0.97560 0.92970 1.03615 1.22793 1.02599 1.03649 0.91155 1.22788 1.02371 0.94115 0.99525 1.22449 0.95102 0.95140 0.98774 1.23423 0.92885 1.02020 0.99915 1.22755 1.04767 0.97609 0.95603 1.23263 0.95722 1.01562 1.03838 0.92074 0.86201 0.88974 0.90059 0.88715 0.88624 0.88510 0.88634 0.90812 0.88177 0.87474 0.88905 0.89655 0.89985 0.87994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.96 55.43 0.77 -25.86 16 2 C 0.08 2.32 5.44 -17.82 -0.10 2.23 16 3 Si 0.87 21.62 24.48 -169.99 -4.16 17.46 16 4 H -0.27 -6.53 6.73 56.52 0.38 -6.15 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.31 6.53 56.52 0.37 -5.94 16 7 C -0.52 -14.85 9.48 -34.44 -0.33 -15.17 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 9 C 0.22 5.63 2.00 -27.88 -0.06 5.58 16 10 H 0.05 1.36 6.21 -51.93 -0.32 1.04 16 11 O -0.34 -7.57 8.38 -39.26 -0.33 -7.90 16 12 C 0.46 8.94 6.43 36.00 0.23 9.17 16 13 O -0.52 -11.11 12.95 -18.75 -0.24 -11.36 16 14 C -0.11 -1.51 4.25 -90.85 -0.39 -1.90 16 15 C -0.08 -1.02 7.66 -26.05 -0.20 -1.22 16 16 C -0.16 -1.80 3.09 -154.71 -0.48 -2.27 16 17 C -0.17 -1.54 10.53 -26.95 -0.28 -1.82 16 18 C -0.15 -1.34 10.53 -26.95 -0.28 -1.63 16 19 C -0.08 -0.96 7.42 -26.13 -0.19 -1.16 16 20 C -0.16 -3.78 4.45 -90.62 -0.40 -4.19 16 21 C -0.17 -3.32 9.80 -26.69 -0.26 -3.58 16 22 C -0.21 -4.12 9.85 -26.70 -0.26 -4.38 16 23 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.12 1.51 8.14 -51.93 -0.42 1.08 16 25 H 0.09 1.28 8.09 -51.93 -0.42 0.86 16 26 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.10 1.39 7.44 -51.93 -0.39 1.00 16 33 H 0.11 2.58 4.40 -51.93 -0.23 2.35 16 34 H 0.09 1.76 6.90 -51.93 -0.36 1.40 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 37 H 0.10 2.09 5.37 -51.93 -0.28 1.81 16 LS Contribution 299.12 15.07 4.51 4.51 Total: -1.00 -30.84 299.12 -7.86 -38.70 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.41 Total: 4.79 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -3.00 Total: -20.34 kcal Atomic # 7 Polarization: -26.64 SS G_CDS: 0.77 Total: -25.86 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.57 Total: -19.25 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.16 Total: 17.46 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.84 -7.86 -38.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123465646.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.917 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds